Wall clock time and date at job start Wed Apr 1 2020 01:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99455 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00180 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99746 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.22277 * 320.48119 * 9 7 6 11 11 C 1.54487 * 110.24377 * 82.50347 * 9 7 6 12 12 C 1.54630 * 101.76511 * 144.41624 * 11 9 7 13 13 C 1.51282 * 104.19273 * 335.19941 * 12 11 9 14 14 O 1.21286 * 124.93539 * 196.27266 * 13 12 11 15 15 N 1.34411 * 110.11767 * 16.25710 * 13 12 11 16 16 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 17 17 C 1.34773 * 119.99910 * 275.00232 * 16 2 1 18 18 O 1.21288 * 120.00271 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.47331 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00488 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99536 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00410 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99884 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00262 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47021 * 59.99521 * 25 23 21 27 27 H 1.48493 * 109.47221 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46623 * 299.99932 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 35 35 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 36 36 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 37 37 H 1.09004 * 110.96707 * 262.53094 * 11 9 7 38 38 H 1.08997 * 110.96782 * 26.29521 * 11 9 7 39 39 H 1.08998 * 110.48239 * 216.52302 * 12 11 9 40 40 H 1.08995 * 110.59825 * 93.93303 * 12 11 9 41 41 H 0.97005 * 124.35135 * 180.42657 * 15 13 12 42 42 H 0.96995 * 120.00293 * 94.99410 * 16 2 1 43 43 H 1.09000 * 109.47712 * 299.99892 * 19 17 16 44 44 H 1.08995 * 109.47183 * 60.00106 * 19 17 16 45 45 H 0.97002 * 119.99766 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3742 -1.3408 -2.7745 8 8 6.1586 -0.8016 -2.0228 9 6 5.8766 -2.0523 -4.0043 10 1 5.3145 -2.9725 -4.1633 11 6 5.7596 -1.1320 -5.2396 12 6 7.0185 -1.5258 -6.0466 13 6 7.9726 -2.0672 -5.0048 14 8 9.1639 -2.2244 -5.1689 15 7 7.3079 -2.3482 -3.8708 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8590 1.1587 2.4115 19 6 2.6488 -0.7288 3.5877 20 16 2.7105 0.4344 4.9731 21 6 3.3135 -0.6307 6.2405 22 1 3.5228 -1.6672 6.0205 23 6 3.5195 -0.1379 7.5216 24 7 3.2640 1.1253 7.7898 25 14 4.1596 -1.2670 8.8651 26 1 5.4862 -1.8044 8.4697 27 1 4.2928 -0.5034 10.1316 28 1 3.2089 -2.3908 9.0616 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9995 -1.0729 -0.4259 36 1 3.4259 -1.7360 -3.1104 37 1 4.8518 -1.3485 -5.8027 38 1 5.7954 -0.0822 -4.9486 39 1 7.4458 -0.6515 -6.5375 40 1 6.7784 -2.2951 -6.7804 41 1 7.7212 -2.7009 -3.0672 42 1 2.2490 -1.6317 1.1527 43 1 1.9759 -1.5506 3.8326 44 1 3.6479 -1.1213 3.3987 45 1 3.4076 1.4696 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737652366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:23 Heat of formation + Delta-G solvation = -119.841024 kcal Electronic energy + Delta-G solvation = -26503.854854 eV Core-core repulsion = 22454.045191 eV Total energy + Delta-G solvation = -4049.809663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28010 -39.73992 -39.31016 -36.93780 -36.44512 -34.84570 -32.42895 -32.03098 -31.81111 -30.11837 -28.61311 -28.17714 -25.48584 -24.20351 -22.89837 -21.72766 -21.10565 -20.84354 -20.38570 -18.37399 -17.87072 -17.74756 -16.68566 -16.49012 -16.36220 -15.93341 -15.66227 -15.23076 -14.87101 -14.80294 -14.56542 -14.20137 -14.14014 -13.89990 -13.72954 -13.66876 -13.30802 -13.25573 -12.96943 -12.67120 -12.56364 -12.21749 -11.99405 -11.86207 -11.78393 -11.62109 -11.16677 -11.04605 -11.03567 -10.76797 -10.56452 -10.34592 -9.82754 -9.63251 -9.56651 -9.42044 -9.06716 -8.96666 -8.24696 -6.50173 -6.21529 -3.92225 2.00698 2.07403 2.45112 2.95191 3.00507 3.06247 3.23683 3.27552 3.30707 3.68080 3.70661 3.73774 4.02463 4.20542 4.26431 4.33983 4.38925 4.57298 4.63460 4.73183 5.00559 5.11555 5.13191 5.13544 5.13889 5.23617 5.25161 5.27244 5.46970 5.53781 5.61119 5.65096 5.87192 5.88717 5.94162 6.10791 6.13228 6.20773 6.51115 6.59901 6.91588 7.59128 7.64175 7.65840 7.77106 8.34930 8.57986 9.23685 10.85805 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.001939 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.223042 B =14433.570867 C =16250.153575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.115 3.885 6 N -0.725 5.725 7 C 0.501 3.499 8 O -0.519 6.519 9 C 0.114 3.886 10 H 0.107 0.893 11 C -0.121 4.121 12 C -0.155 4.155 13 C 0.522 3.478 14 O -0.528 6.528 15 N -0.710 5.710 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.155 4.155 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.401 0.599 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.417 0.583 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 -9.413 -30.722 32.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.008 4.008 6 N -0.378 5.378 7 C 0.284 3.716 8 O -0.393 6.393 9 C 0.005 3.995 10 H 0.124 0.876 11 C -0.160 4.160 12 C -0.195 4.195 13 C 0.308 3.692 14 O -0.404 6.404 15 N -0.367 5.367 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.236 0.764 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.257 0.743 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.881 -6.915 -30.120 31.038 hybrid contribution 0.546 -2.938 1.000 3.151 sum -2.335 -9.852 -29.120 30.830 Atomic orbital electron populations 1.22174 0.94957 1.02115 1.02885 1.20777 0.94211 0.97760 0.83195 0.89051 1.22104 0.94319 1.02141 0.98939 1.21478 0.93796 0.98141 0.87388 1.45962 1.07160 1.57284 1.27373 1.20708 0.82736 0.81119 0.87019 1.90822 1.55211 1.44472 1.48832 1.21596 0.83991 0.99494 0.94466 0.87579 1.22624 0.99412 1.00311 0.93622 1.22374 0.95140 1.03928 0.98068 1.20833 0.87864 0.76564 0.83901 1.90793 1.14568 1.53853 1.81197 1.45968 1.07731 1.66459 1.16533 1.46129 1.69581 1.13847 1.09588 1.20304 0.76698 0.87222 0.83761 1.90704 1.48161 1.15721 1.84373 1.23538 1.03653 1.04883 0.98444 1.85385 1.86281 1.12865 0.98744 1.22822 1.51141 0.98112 0.96376 0.91004 1.24992 0.95082 0.95549 0.97957 1.70008 1.45447 1.13209 1.21603 0.86225 0.79332 0.80002 0.79953 1.19932 1.20801 1.19951 0.91849 0.92523 0.91404 0.90548 0.89640 0.90860 0.90677 0.76444 0.87964 0.89186 0.87424 0.87205 0.74285 0.76949 0.89273 0.89267 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.48 37.16 0.35 -1.10 16 2 C 0.15 1.37 2.57 -67.93 -0.17 1.20 16 3 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 4 C -0.14 -0.70 4.87 -26.73 -0.13 -0.83 16 5 C 0.12 0.84 5.56 -4.04 -0.02 0.82 16 6 N -0.72 -3.51 5.56 -60.29 -0.33 -3.84 16 7 C 0.50 3.74 7.01 -10.99 -0.08 3.66 16 8 O -0.52 -6.78 16.58 5.55 0.09 -6.69 16 9 C 0.11 0.49 3.92 -68.16 -0.27 0.23 16 10 H 0.11 0.12 8.14 -51.93 -0.42 -0.30 16 11 C -0.12 -0.31 6.68 -25.09 -0.17 -0.47 16 12 C -0.15 -0.63 6.86 -26.74 -0.18 -0.81 16 13 C 0.52 4.64 8.43 -10.86 -0.09 4.55 16 14 O -0.53 -7.20 18.03 5.55 0.10 -7.10 16 15 N -0.71 -5.31 5.47 -53.88 -0.29 -5.60 16 16 N -0.74 -8.62 4.53 -53.80 -0.24 -8.87 16 17 C 0.53 9.45 7.81 -10.99 -0.09 9.36 16 18 O -0.52 -11.24 15.53 5.55 0.09 -11.15 16 19 C -0.15 -3.06 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.30 9.50 30.94 0.29 -15.01 16 22 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 25 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.71 7.75 -51.93 -0.40 0.31 16 36 H 0.40 0.45 8.47 -40.82 -0.35 0.10 16 37 H 0.10 -0.07 8.14 -51.93 -0.42 -0.50 16 38 H 0.09 0.34 7.90 -51.93 -0.41 -0.07 16 39 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.42 3.39 8.96 -40.82 -0.37 3.02 16 42 H 0.40 3.55 8.60 -40.82 -0.35 3.20 16 43 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 397.79 15.07 5.99 5.99 Total: -1.00 -40.91 397.79 -8.42 -49.33 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -6.89 Total: 0.00 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: -0.43 Total: 0.77 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -0.14 Total: -43.82 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: 0.28 Total: -24.94 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.91 -8.42 -49.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737652366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.513 kcal (2) G-P(sol) polarization free energy of solvation -40.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds