Wall clock time and date at job start Wed Apr 1 2020 01:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 N 1.46504 * 109.46748 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99455 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00180 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99746 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.22277 * 320.48119 * 9 7 6 11 11 C 1.54487 * 110.24377 * 82.50347 * 9 7 6 12 12 C 1.54630 * 101.76511 * 144.41624 * 11 9 7 13 13 C 1.51282 * 104.19273 * 335.19941 * 12 11 9 14 14 O 1.21286 * 124.93539 * 196.27266 * 13 12 11 15 15 N 1.34411 * 110.11767 * 16.25710 * 13 12 11 16 16 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 17 17 C 1.34773 * 119.99910 * 275.00232 * 16 2 1 18 18 O 1.21288 * 120.00271 * 359.97438 * 17 16 2 19 19 C 1.50699 * 119.99928 * 179.97438 * 17 16 2 20 20 S 1.81000 * 109.47331 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00488 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99536 * 0.02562 * 21 20 19 23 23 C 1.38795 * 120.00410 * 180.02562 * 21 20 19 24 24 N 1.31634 * 119.99884 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00262 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47021 * 59.99521 * 25 23 21 27 27 H 1.48493 * 109.47221 * 179.97438 * 25 23 21 28 28 H 1.48501 * 109.46623 * 299.99932 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 32 32 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 33 33 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 34 34 H 1.08993 * 109.47331 * 300.00296 * 5 4 2 35 35 H 1.09001 * 109.46791 * 60.00740 * 5 4 2 36 36 H 0.96992 * 120.00104 * 0.02562 * 6 5 4 37 37 H 1.09004 * 110.96707 * 262.53094 * 11 9 7 38 38 H 1.08997 * 110.96782 * 26.29521 * 11 9 7 39 39 H 1.08998 * 110.48239 * 216.52302 * 12 11 9 40 40 H 1.08995 * 110.59825 * 93.93303 * 12 11 9 41 41 H 0.97005 * 124.35135 * 180.42657 * 15 13 12 42 42 H 0.96995 * 120.00293 * 94.99410 * 16 2 1 43 43 H 1.09000 * 109.47712 * 299.99892 * 19 17 16 44 44 H 1.08995 * 109.47183 * 60.00106 * 19 17 16 45 45 H 0.97002 * 119.99766 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 7 4.0532 -1.3045 -2.5095 7 6 5.3742 -1.3408 -2.7745 8 8 6.1586 -0.8016 -2.0228 9 6 5.8766 -2.0523 -4.0043 10 1 5.3145 -2.9725 -4.1633 11 6 5.7596 -1.1320 -5.2396 12 6 7.0185 -1.5258 -6.0466 13 6 7.9726 -2.0672 -5.0048 14 8 9.1639 -2.2244 -5.1689 15 7 7.3079 -2.3482 -3.8708 16 7 2.0184 -0.6906 1.1962 17 6 2.1470 -0.0182 2.3571 18 8 1.8590 1.1587 2.4115 19 6 2.6488 -0.7288 3.5877 20 16 2.7105 0.4344 4.9731 21 6 3.3135 -0.6307 6.2405 22 1 3.5228 -1.6672 6.0205 23 6 3.5195 -0.1379 7.5216 24 7 3.2640 1.1253 7.7898 25 14 4.1596 -1.2670 8.8651 26 1 5.4862 -1.8044 8.4697 27 1 4.2928 -0.5034 10.1316 28 1 3.2089 -2.3908 9.0616 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.7517 -1.7715 -1.2055 33 1 1.6055 -0.2618 -2.1370 34 1 3.8532 0.4369 -1.3573 35 1 3.9995 -1.0729 -0.4259 36 1 3.4259 -1.7360 -3.1104 37 1 4.8518 -1.3485 -5.8027 38 1 5.7954 -0.0822 -4.9486 39 1 7.4458 -0.6515 -6.5375 40 1 6.7784 -2.2951 -6.7804 41 1 7.7212 -2.7009 -3.0672 42 1 2.2490 -1.6317 1.1527 43 1 1.9759 -1.5506 3.8326 44 1 3.6479 -1.1213 3.3987 45 1 3.4076 1.4696 8.6852 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737652366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:22 Heat of formation + Delta-G solvation = -155.328473 kcal Electronic energy + Delta-G solvation = -26505.393705 eV Core-core repulsion = 22454.045191 eV Total energy + Delta-G solvation = -4051.348514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.82367 -40.82339 -40.16118 -37.77461 -37.19606 -35.66075 -34.60009 -33.07760 -32.26328 -30.89000 -29.89626 -28.70651 -27.67183 -24.78984 -23.35093 -22.53830 -21.75824 -21.56804 -21.34140 -19.85588 -18.91593 -18.27814 -17.92651 -17.35822 -17.10255 -16.89440 -16.67667 -16.46614 -16.36070 -15.90002 -15.72878 -15.12415 -14.81175 -14.74874 -14.69706 -14.49780 -14.38928 -14.09944 -13.95331 -13.56122 -13.30070 -13.18852 -13.00776 -12.93808 -12.88219 -12.62410 -12.41731 -12.37738 -12.08408 -11.89025 -11.74741 -11.22723 -11.14572 -11.02267 -10.90526 -10.29566 -10.26462 -10.14698 -10.05623 -8.68056 -8.36087 -6.14189 1.25959 1.42148 1.43556 1.45596 1.46743 1.55651 1.63640 1.94474 2.25356 2.32541 2.44748 2.97757 3.30920 3.31373 3.40157 3.69679 3.77632 3.92157 4.03112 4.04417 4.12161 4.12381 4.28211 4.45638 4.48541 4.49828 4.52794 4.68238 4.82890 4.84994 4.92662 4.98200 5.06401 5.07336 5.17355 5.35735 5.38369 5.39620 5.58657 5.66771 5.91267 6.17813 6.50398 6.53698 7.04939 7.10512 7.21756 7.28493 8.72831 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.001939 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.223042 B =14433.570867 C =16250.153575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.116 3.884 6 N -0.700 5.700 7 C 0.497 3.503 8 O -0.586 6.586 9 C 0.117 3.883 10 H 0.154 0.846 11 C -0.111 4.111 12 C -0.145 4.145 13 C 0.506 3.494 14 O -0.591 6.591 15 N -0.717 5.717 16 N -0.709 5.709 17 C 0.534 3.466 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.548 4.548 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.998 3.002 26 H -0.264 1.264 27 H -0.278 1.278 28 H -0.260 1.260 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.026 0.974 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.426 0.574 37 H 0.152 0.848 38 H 0.074 0.926 39 H 0.109 0.891 40 H 0.141 0.859 41 H 0.408 0.592 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.552 -12.562 -33.498 36.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.008 4.008 6 N -0.354 5.354 7 C 0.283 3.717 8 O -0.465 6.465 9 C 0.008 3.992 10 H 0.171 0.829 11 C -0.149 4.149 12 C -0.185 4.185 13 C 0.295 3.705 14 O -0.472 6.472 15 N -0.370 5.370 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.444 6.444 19 C -0.283 4.283 20 S 0.075 5.925 21 C -0.695 4.695 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.189 1.189 27 H -0.203 1.203 28 H -0.184 1.184 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.046 0.954 32 H 0.127 0.873 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.265 0.735 37 H 0.170 0.830 38 H 0.093 0.907 39 H 0.127 0.873 40 H 0.158 0.842 41 H 0.246 0.754 42 H 0.252 0.748 43 H 0.129 0.871 44 H 0.122 0.878 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.954 -10.129 -32.974 34.848 hybrid contribution 1.105 -1.970 1.757 2.862 sum -3.849 -12.099 -31.216 33.700 Atomic orbital electron populations 1.22124 0.93911 1.03265 1.02253 1.21025 0.94972 0.96843 0.83677 0.92002 1.22000 0.92155 1.03739 0.97502 1.21302 0.95394 0.96604 0.87531 1.45695 1.06843 1.56144 1.26708 1.21351 0.82898 0.80200 0.87254 1.90807 1.57001 1.47425 1.51307 1.21973 0.82316 1.01491 0.93384 0.82861 1.22754 1.00616 0.98985 0.92545 1.22432 0.94285 1.04570 0.97205 1.21792 0.87750 0.75745 0.85226 1.90746 1.17387 1.56546 1.82504 1.46222 1.09422 1.65421 1.15923 1.45907 1.67495 1.14506 1.08475 1.19993 0.76660 0.86569 0.84782 1.90692 1.50710 1.17746 1.85208 1.23390 1.05265 1.03272 0.96346 1.85556 1.86654 1.17452 1.02859 1.23169 1.51071 0.98437 0.96860 0.89994 1.26142 0.95078 0.97240 1.00783 1.70180 1.46759 1.15467 1.22301 0.85007 0.79027 0.77800 0.76186 1.18884 1.20343 1.18438 0.89170 0.90379 0.95430 0.87330 0.86312 0.93603 0.93148 0.73523 0.83013 0.90709 0.87315 0.84164 0.75375 0.74832 0.87142 0.87827 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.42 9.48 71.98 0.68 -1.73 16 2 C 0.14 2.36 2.57 44.99 0.12 2.48 16 3 H 0.06 1.46 7.58 -2.39 -0.02 1.45 16 4 C -0.12 -0.71 4.87 30.59 0.15 -0.56 16 5 C 0.12 1.47 5.56 86.38 0.48 1.95 16 6 N -0.70 -4.43 5.56 -463.05 -2.57 -7.00 16 7 C 0.50 6.56 7.01 87.66 0.61 7.18 16 8 O -0.59 -15.75 16.58 -3.04 -0.05 -15.80 16 9 C 0.12 0.65 3.92 44.70 0.18 0.82 16 10 H 0.15 -0.50 8.14 -2.39 -0.02 -0.52 16 11 C -0.11 -0.12 6.68 31.65 0.21 0.09 16 12 C -0.15 -0.80 6.86 30.59 0.21 -0.59 16 13 C 0.51 8.92 8.43 87.90 0.74 9.66 16 14 O -0.59 -17.03 18.03 -3.05 -0.05 -17.08 16 15 N -0.72 -10.31 5.47 -442.97 -2.42 -12.73 16 16 N -0.71 -15.62 4.53 -442.52 -2.00 -17.63 16 17 C 0.53 19.12 7.81 87.66 0.68 19.80 16 18 O -0.57 -25.80 15.53 -3.05 -0.05 -25.85 16 19 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 20 S -0.15 -8.56 20.57 -56.49 -1.16 -9.73 16 21 C -0.55 -31.68 9.50 67.95 0.65 -31.03 16 22 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 23 C 0.01 0.71 5.49 84.86 0.47 1.18 16 24 N -0.91 -56.64 13.22 21.65 0.29 -56.36 16 25 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 26 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 27 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 28 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.05 0.91 7.75 -2.39 -0.02 0.89 16 36 H 0.43 -1.47 8.47 -92.71 -0.79 -2.25 16 37 H 0.15 -1.25 8.14 -2.39 -0.02 -1.27 16 38 H 0.07 0.37 7.90 -2.39 -0.02 0.35 16 39 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.14 -0.04 8.14 -2.39 -0.02 -0.06 16 41 H 0.41 6.96 8.96 -92.70 -0.83 6.13 16 42 H 0.41 6.25 8.60 -92.71 -0.80 5.45 16 43 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 44 H 0.10 3.79 8.14 -2.40 -0.02 3.77 16 45 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -100.56 397.79 -1.76 -102.32 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -1.38 Total: 9.20 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 5.62 Total: 4.47 kcal Atomic # 7 Polarization: -87.00 SS G_CDS: -6.71 Total: -93.72 kcal Atomic # 8 Polarization: -58.58 SS G_CDS: -0.15 Total: -58.73 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.73 kcal Total: -100.56 -1.76 -102.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737652366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.009 kcal (2) G-P(sol) polarization free energy of solvation -100.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds