Wall clock time and date at job start Wed Apr 1 2020 02:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21284 * 119.99875 * 2 1 4 4 N 1.34779 * 120.00217 * 180.27691 * 2 1 3 5 5 C 1.46500 * 120.00047 * 179.72498 * 4 2 1 6 6 C 1.50701 * 109.46935 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00331 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.47420 * 125.65078 * 354.63681 * 8 6 5 10 10 C 1.54692 * 104.94650 * 204.07125 * 9 8 6 11 11 C 1.55165 * 101.67198 * 323.27666 * 10 9 8 12 12 C 1.47025 * 125.64909 * 174.93844 * 8 6 5 13 13 H 1.09007 * 109.87748 * 59.49198 * 12 8 6 14 14 C 1.53004 * 109.88344 * 298.32956 * 12 8 6 15 15 N 1.46499 * 109.46741 * 175.32546 * 14 12 8 16 16 C 1.34778 * 119.99503 * 184.90401 * 15 14 12 17 17 O 1.21282 * 120.00288 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99896 * 180.02562 * 16 15 14 19 19 S 1.80999 * 109.47152 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00176 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00015 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00422 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99608 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47314 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47285 * 120.00224 * 24 22 20 27 27 H 1.48506 * 109.46691 * 239.99846 * 24 22 20 28 28 H 1.09007 * 109.46750 * 269.72149 * 1 2 3 29 29 H 1.08993 * 109.46941 * 29.72282 * 1 2 3 30 30 H 1.08998 * 109.46888 * 149.72523 * 1 2 3 31 31 H 0.96996 * 119.99963 * 359.71895 * 4 2 1 32 32 H 1.08997 * 109.47303 * 299.99962 * 5 4 2 33 33 H 1.09002 * 109.47154 * 60.00149 * 5 4 2 34 34 H 1.09005 * 110.36869 * 323.00329 * 9 8 6 35 35 H 1.09005 * 110.36914 * 85.31947 * 9 8 6 36 36 H 1.08995 * 111.10464 * 205.11070 * 10 9 8 37 37 H 1.08997 * 110.81347 * 81.31728 * 10 9 8 38 38 H 1.08999 * 110.71978 * 276.96812 * 11 10 9 39 39 H 1.08998 * 110.86977 * 153.76942 * 11 10 9 40 40 H 1.08998 * 109.46947 * 295.32092 * 14 12 8 41 41 H 1.08992 * 109.46938 * 55.32318 * 14 12 8 42 42 H 0.96992 * 120.00436 * 4.90120 * 15 14 12 43 43 H 1.08999 * 109.47286 * 299.99507 * 18 16 15 44 44 H 1.08997 * 109.47627 * 59.99567 * 18 16 15 45 45 H 0.97004 * 120.00249 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 3.6459 -1.1671 -0.0117 6 6 4.1483 -2.5879 -0.0166 7 8 3.3602 -3.5098 -0.0157 8 7 5.4733 -2.8341 -0.0232 9 6 6.5355 -1.8183 -0.1381 10 6 7.7556 -2.5795 -0.7080 11 6 7.6262 -3.9545 -0.0006 12 6 6.0989 -4.1609 0.0769 13 1 5.7674 -4.7902 -0.7491 14 6 5.7287 -4.8114 1.4114 15 7 6.2631 -6.1747 1.4549 16 6 5.9760 -6.9780 2.4983 17 8 5.2756 -6.5721 3.4015 18 6 6.5261 -8.3803 2.5434 19 16 5.9675 -9.1991 4.0578 20 6 6.7337 -10.7729 3.8553 21 1 7.3337 -10.9727 2.9798 22 6 6.5671 -11.7555 4.8213 23 7 5.8371 -11.5115 5.8891 24 14 7.3799 -13.4236 4.6069 25 1 8.1407 -13.4433 3.3317 26 1 8.3064 -13.6722 5.7405 27 1 6.3383 -14.4817 4.5777 28 1 -0.3633 -0.0050 1.0277 29 1 -0.3633 0.8924 -0.5095 30 1 -0.3633 -0.8875 -0.5181 31 1 1.6960 -2.0072 -0.0056 32 1 4.0056 -0.6511 -0.9019 33 1 4.0130 -0.6554 0.8780 34 1 6.2298 -1.0254 -0.8208 35 1 6.7731 -1.4052 0.8422 36 1 8.6884 -2.0861 -0.4353 37 1 7.6741 -2.6875 -1.7896 38 1 8.0615 -3.9168 0.9981 39 1 8.0922 -4.7415 -0.5933 40 1 6.1524 -4.2288 2.2295 41 1 4.6439 -4.8430 1.5117 42 1 6.8235 -6.4993 0.7329 43 1 6.1714 -8.9378 1.6766 44 1 7.6154 -8.3439 2.5311 45 1 5.7208 -12.1980 6.5645 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737829209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:30:45 Heat of formation + Delta-G solvation = -109.202153 kcal Electronic energy + Delta-G solvation = -26864.100500 eV Core-core repulsion = 22814.752173 eV Total energy + Delta-G solvation = -4049.348327 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98725 -39.85015 -39.03902 -37.97413 -34.90399 -34.57300 -32.43218 -32.35563 -31.05877 -30.59208 -28.84908 -27.43408 -25.65929 -25.24368 -23.17866 -21.69220 -20.98433 -20.48561 -19.54983 -18.04138 -17.76714 -17.39963 -16.79677 -16.53218 -16.22263 -16.16385 -15.45423 -15.31140 -15.07060 -14.80749 -14.75052 -14.13923 -13.99301 -13.81020 -13.66632 -13.51280 -13.20989 -13.08524 -13.01339 -12.93457 -12.56404 -12.47535 -12.33907 -11.86749 -11.81582 -11.27627 -11.23845 -11.07300 -11.02107 -10.76369 -10.42104 -10.38028 -9.81339 -9.63306 -9.45386 -9.18790 -9.08116 -8.90650 -8.22924 -6.50031 -6.21906 -3.92373 2.02919 2.14717 2.22996 2.86547 3.09528 3.10231 3.21253 3.28564 3.33856 3.71485 3.80375 4.00264 4.19994 4.23601 4.33855 4.44029 4.57564 4.77374 4.79657 4.81246 4.87740 4.91535 5.01696 5.06008 5.13290 5.14783 5.28985 5.29508 5.39770 5.42325 5.54456 5.61845 5.64518 5.78170 5.83909 5.89167 5.99737 6.13037 6.55815 6.91788 7.06011 7.56065 7.59584 7.67674 7.77344 8.35181 8.60755 9.23433 10.85584 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016976 B = 0.001927 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.978225 B =14526.701510 C =15819.753920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.515 3.485 3 O -0.551 6.551 4 N -0.720 5.720 5 C 0.105 3.895 6 C 0.524 3.476 7 O -0.525 6.525 8 N -0.610 5.610 9 C 0.094 3.906 10 C -0.131 4.131 11 C -0.132 4.132 12 C 0.128 3.872 13 H 0.086 0.914 14 C 0.113 3.887 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.152 4.152 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.097 0.903 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.414 0.586 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.397 0.603 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.187 23.289 -17.938 29.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.302 3.698 3 O -0.428 6.428 4 N -0.377 5.377 5 C -0.023 4.023 6 C 0.312 3.688 7 O -0.401 6.401 8 N -0.345 5.345 9 C -0.029 4.029 10 C -0.169 4.169 11 C -0.170 4.170 12 C 0.025 3.975 13 H 0.104 0.896 14 C -0.012 4.012 15 N -0.391 5.391 16 C 0.319 3.681 17 O -0.389 6.389 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.137 4.137 23 N -0.503 5.503 24 Si 0.746 3.254 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.253 0.747 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.231 0.769 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.162 24.181 -16.246 29.155 hybrid contribution 1.465 -2.105 -1.483 2.962 sum 0.303 22.076 -17.729 28.315 Atomic orbital electron populations 1.21872 0.90921 1.05125 1.05194 1.20868 0.90871 0.82888 0.75154 1.90730 1.70849 1.31403 1.49850 1.45872 1.05832 1.10227 1.75762 1.21019 0.82639 0.93794 1.04841 1.20206 0.81041 0.91263 0.76294 1.90765 1.54114 1.45910 1.49272 1.48348 1.04859 1.08351 1.72935 1.22446 0.87322 0.91355 1.01746 1.22738 0.97817 0.95614 1.00760 1.22812 0.93504 0.98088 1.02601 1.21783 0.93098 0.84537 0.98119 0.89594 1.21545 1.00825 0.83010 0.95844 1.45825 1.54764 1.13618 1.24853 1.20307 0.80008 0.86701 0.81125 1.90712 1.36479 1.75247 1.36451 1.23520 1.04062 0.94992 1.07722 1.85432 1.67229 1.11247 1.19480 1.22909 1.36579 0.98737 1.10092 0.90861 1.25002 0.95196 0.98982 0.94478 1.70029 1.36918 1.34280 1.09029 0.86109 0.78978 0.82096 0.78254 1.19625 1.20571 1.20571 0.88488 0.88651 0.89860 0.74745 0.88396 0.88168 0.89981 0.90500 0.89221 0.90310 0.89600 0.89338 0.91688 0.90238 0.76924 0.89180 0.89184 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.30 36.01 0.37 -0.50 16 2 C 0.51 4.52 7.94 -10.98 -0.09 4.43 16 3 O -0.55 -6.88 17.10 5.55 0.09 -6.79 16 4 N -0.72 -5.90 5.53 -61.47 -0.34 -6.24 16 5 C 0.10 0.80 5.25 -5.19 -0.03 0.78 16 6 C 0.52 5.03 7.64 -10.99 -0.08 4.94 16 7 O -0.52 -6.93 14.85 5.56 0.08 -6.85 16 8 N -0.61 -4.76 3.07 -163.15 -0.50 -5.26 16 9 C 0.09 0.42 6.64 -2.65 -0.02 0.41 16 10 C -0.13 -0.48 7.07 -24.70 -0.17 -0.66 16 11 C -0.13 -0.72 6.08 -24.89 -0.15 -0.87 16 12 C 0.13 1.08 2.93 -66.95 -0.20 0.88 16 13 H 0.09 0.77 8.14 -51.92 -0.42 0.35 16 14 C 0.11 1.40 5.07 -4.04 -0.02 1.38 16 15 N -0.74 -9.78 5.41 -60.30 -0.33 -10.11 16 16 C 0.53 10.08 7.85 -10.99 -0.09 9.99 16 17 O -0.52 -12.07 15.86 5.56 0.09 -11.98 16 18 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 20 C -0.53 -15.26 9.50 30.94 0.29 -14.97 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 24 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 28 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.41 3.26 7.44 -40.82 -0.30 2.95 16 32 H 0.10 0.63 7.76 -51.93 -0.40 0.23 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.25 7.51 -51.93 -0.39 -0.14 16 35 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.52 7.77 -51.93 -0.40 0.12 16 39 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 41 H 0.08 1.26 6.89 -51.93 -0.36 0.90 16 42 H 0.40 3.91 8.25 -40.82 -0.34 3.57 16 43 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 393.73 15.07 5.93 5.93 Total: -1.00 -39.48 393.73 -8.33 -47.81 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.81 Total: 1.52 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.05 Total: 4.96 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.43 Total: -47.13 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.27 Total: -25.61 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.48 -8.33 -47.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737829209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.396 kcal (2) G-P(sol) polarization free energy of solvation -39.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds