Wall clock time and date at job start Wed Apr 1 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 120.00121 * 2 1 4 4 N 1.34777 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00033 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.46566 * 324.99334 * 5 4 2 7 7 C 1.52997 * 109.47289 * 84.99600 * 5 4 2 8 8 C 1.50697 * 109.47015 * 205.00057 * 5 4 2 9 9 O 1.21283 * 120.00261 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00075 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00084 * 180.02562 * 10 8 5 12 12 C 1.52996 * 109.47249 * 179.97438 * 11 10 8 13 13 C 1.53953 * 113.73925 * 273.73941 * 12 11 10 14 14 N 1.47818 * 86.03562 * 222.08132 * 13 12 11 15 15 C 1.34770 * 134.45576 * 204.64413 * 14 13 12 16 16 O 1.21288 * 119.99951 * 179.86658 * 15 14 13 17 17 C 1.50698 * 120.00093 * 359.86766 * 15 14 13 18 18 S 1.81003 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00136 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99658 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00198 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99991 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99695 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47466 * 90.00014 * 23 21 19 25 25 H 1.48502 * 109.46809 * 209.99711 * 23 21 19 26 26 H 1.48493 * 109.47250 * 329.99345 * 23 21 19 27 27 C 1.47590 * 91.04803 * 24.54703 * 14 13 12 28 28 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46883 * 299.99576 * 1 2 3 30 30 H 1.08998 * 109.47494 * 59.99969 * 1 2 3 31 31 H 0.96992 * 119.99904 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 33 33 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 34 34 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 35 35 H 0.96996 * 119.99636 * 359.97438 * 10 8 5 36 36 H 1.09001 * 109.47049 * 299.99628 * 11 10 8 37 37 H 1.09000 * 109.47381 * 59.99594 * 11 10 8 38 38 H 1.09008 * 112.94467 * 45.32751 * 12 11 10 39 39 H 1.08996 * 113.76994 * 336.34636 * 13 12 11 40 40 H 1.09003 * 113.76910 * 107.74566 * 13 12 11 41 41 H 1.09000 * 109.47064 * 299.99703 * 17 15 14 42 42 H 1.08996 * 109.47279 * 60.00022 * 17 15 14 43 43 H 0.96998 * 120.00086 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.76957 * 221.14691 * 27 14 13 45 45 H 1.09007 * 113.76619 * 89.75626 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0094 -0.3250 -0.5888 7 6 4.1554 -1.0423 1.4373 8 6 4.1485 -2.4544 -0.6011 9 8 3.3606 -3.2898 -0.9911 10 7 5.4736 -2.6777 -0.7044 11 6 5.9622 -3.9289 -1.2893 12 6 7.4922 -3.9290 -1.2886 13 6 8.1125 -3.2500 -2.5232 14 7 9.0732 -4.3734 -2.5309 15 6 10.3252 -4.5415 -3.0006 16 8 10.8884 -5.6062 -2.8582 17 6 11.0253 -3.4067 -3.7026 18 16 12.6787 -3.9399 -4.2108 19 6 13.2526 -2.4636 -4.9826 20 1 12.6148 -1.5930 -5.0243 21 6 14.5248 -2.4191 -5.5359 22 7 14.9533 -1.3163 -6.1129 23 14 15.6281 -3.9246 -5.4630 24 1 15.4031 -4.7621 -6.6685 25 1 17.0489 -3.4952 -5.4168 26 1 15.3096 -4.7133 -4.2458 27 6 8.1122 -5.2356 -1.8158 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6959 -2.0072 -0.0005 32 1 5.2454 -1.0427 1.4377 33 1 3.7919 -1.8845 2.0260 34 1 3.7919 -0.1111 1.8721 35 1 6.1038 -2.0097 -0.3921 36 1 5.5983 -4.7714 -0.7011 37 1 5.5997 -4.0172 -2.3134 38 1 7.9167 -3.5921 -0.3428 39 1 7.4534 -3.2297 -3.3910 40 1 8.5677 -2.2827 -2.3104 41 1 10.4513 -3.1140 -4.5818 42 1 11.1102 -2.5573 -3.0249 43 1 15.8422 -1.2853 -6.4999 44 1 8.5670 -5.8507 -1.0394 45 1 7.4529 -5.7999 -2.4755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738035626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:21 Heat of formation + Delta-G solvation = -77.250302 kcal Electronic energy + Delta-G solvation = -26291.657196 eV Core-core repulsion = 22243.694406 eV Total energy + Delta-G solvation = -4047.962791 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.99086 -40.34992 -39.44886 -37.78479 -35.52278 -35.19593 -32.47078 -32.25500 -31.06095 -29.54789 -28.89424 -26.52595 -26.19229 -25.59480 -24.44789 -21.43867 -21.15739 -20.68512 -19.22304 -18.37491 -17.73815 -17.41104 -16.84256 -16.59954 -16.32252 -16.05666 -15.71460 -15.40529 -15.31792 -14.96260 -14.56448 -14.34432 -14.12710 -13.87253 -13.67770 -13.33377 -13.11724 -13.08371 -12.94855 -12.91362 -12.83790 -12.59282 -12.33819 -12.14782 -12.07828 -11.73828 -11.29416 -11.22340 -11.03328 -10.65258 -10.47153 -10.39226 -9.88457 -9.74326 -9.63619 -9.53935 -9.03351 -8.77138 -8.54146 -6.96162 -6.31740 -4.04190 1.99465 2.11640 2.29589 2.50130 2.85153 2.89781 3.05481 3.31013 3.48071 3.53254 3.83575 4.03961 4.29145 4.29496 4.33545 4.39365 4.46873 4.56734 4.66209 4.69865 4.72333 4.92223 4.97530 5.00738 5.07285 5.13015 5.16537 5.18345 5.20474 5.28026 5.33956 5.42067 5.54329 5.66752 5.74293 5.80321 5.84843 5.86751 5.96300 6.84739 6.97181 7.56283 7.63625 7.70159 7.91174 8.35146 8.38423 9.14262 10.77410 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001668 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.447787 B =16785.291537 C =17771.377653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.514 3.486 3 O -0.547 6.547 4 N -0.715 5.715 5 C 0.122 3.878 6 H 0.117 0.883 7 C -0.160 4.160 8 C 0.513 3.487 9 O -0.536 6.536 10 N -0.722 5.722 11 C 0.129 3.871 12 C -0.139 4.139 13 C 0.106 3.894 14 N -0.651 5.651 15 C 0.555 3.445 16 O -0.516 6.516 17 C -0.116 4.116 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.121 3.879 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.165 -0.508 16.049 33.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.302 3.698 3 O -0.424 6.424 4 N -0.370 5.370 5 C 0.013 3.987 6 H 0.134 0.866 7 C -0.218 4.218 8 C 0.298 3.702 9 O -0.412 6.412 10 N -0.374 5.374 11 C 0.005 3.995 12 C -0.158 4.158 13 C -0.017 4.017 14 N -0.390 5.390 15 C 0.344 3.656 16 O -0.390 6.390 17 C -0.267 4.267 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.003 4.003 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.248 0.752 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.129 0.871 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.104 0.896 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -28.073 -1.888 15.776 32.258 hybrid contribution 0.099 0.746 -0.299 0.810 sum -27.975 -1.142 15.477 31.991 Atomic orbital electron populations 1.21839 0.91085 1.04509 1.05520 1.20878 0.90815 0.83093 0.75037 1.90746 1.70667 1.31330 1.49648 1.45924 1.05628 1.09844 1.75558 1.20773 0.82511 0.96769 0.98626 0.86581 1.22142 1.01773 1.03721 0.94198 1.20576 0.82699 0.88355 0.78573 1.90722 1.55232 1.46537 1.48750 1.45907 1.06793 1.21283 1.63444 1.21384 0.92174 0.86313 0.99635 1.23479 0.93859 0.98480 1.00006 1.23359 0.89329 0.92363 0.96672 1.49976 1.12775 1.16190 1.60061 1.20018 0.79277 0.89192 0.77102 1.90717 1.64386 1.27886 1.56027 1.23216 1.01510 0.99298 1.02648 1.84802 1.09231 1.22492 1.75041 1.22299 1.04350 0.97868 1.42457 0.89381 1.24706 0.96860 0.96309 0.93366 1.69934 1.19106 1.26546 1.35986 0.86735 0.80432 0.83386 0.81309 1.19178 1.19875 1.15946 1.22997 0.88766 0.93572 0.94955 0.90358 0.88544 0.88460 0.75216 0.90775 0.91665 0.90596 0.75938 0.90405 0.90472 0.87078 0.89380 0.89504 0.88629 0.88584 0.91901 0.89612 0.89578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 10.39 36.00 0.37 -0.22 16 2 C 0.51 3.71 7.90 -10.99 -0.09 3.62 16 3 O -0.55 -6.17 16.76 5.55 0.09 -6.08 16 4 N -0.71 -4.37 4.95 -54.93 -0.27 -4.64 16 5 C 0.12 0.72 2.98 -69.08 -0.21 0.52 16 6 H 0.12 0.76 7.58 -51.93 -0.39 0.36 16 7 C -0.16 -0.71 9.38 37.16 0.35 -0.36 16 8 C 0.51 3.49 7.22 -10.99 -0.08 3.41 16 9 O -0.54 -5.38 15.84 5.55 0.09 -5.30 16 10 N -0.72 -3.41 5.45 -60.30 -0.33 -3.73 16 11 C 0.13 0.68 5.51 -4.04 -0.02 0.65 16 12 C -0.14 -0.79 3.93 -89.69 -0.35 -1.15 16 13 C 0.11 0.84 8.19 -2.83 -0.02 0.81 16 14 N -0.65 -8.15 3.61 -178.11 -0.64 -8.79 16 15 C 0.55 9.99 8.07 -10.99 -0.09 9.90 16 16 O -0.52 -11.34 16.59 5.55 0.09 -11.25 16 17 C -0.12 -2.26 5.91 36.00 0.21 -2.05 16 18 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 19 C -0.52 -15.00 10.04 30.94 0.31 -14.69 16 20 H 0.09 2.63 8.03 -52.48 -0.42 2.21 16 21 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 22 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 23 Si 0.86 21.71 27.74 -169.99 -4.72 17.00 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 27 C 0.12 1.06 8.41 -2.96 -0.02 1.03 16 28 H 0.08 0.12 7.91 -51.93 -0.41 -0.29 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.41 2.11 7.63 -40.82 -0.31 1.80 16 32 H 0.07 0.20 7.56 -51.93 -0.39 -0.19 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.41 1.05 7.89 -40.82 -0.32 0.72 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.47 7.87 -51.93 -0.41 0.07 16 38 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 39 H 0.09 0.62 7.92 -51.93 -0.41 0.21 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -39.15 398.07 -7.52 -46.67 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -6.88 Total: -2.85 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 0.27 Total: 4.21 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.47 Total: -42.79 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.27 Total: -22.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.15 -7.52 -46.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738035626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.581 kcal (2) G-P(sol) polarization free energy of solvation -39.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds