Wall clock time and date at job start Wed Apr 1 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21287 * 120.00121 * 2 1 4 4 N 1.34777 * 120.00198 * 180.02562 * 2 1 3 5 5 C 1.46506 * 120.00033 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.46566 * 324.99334 * 5 4 2 7 7 C 1.52997 * 109.47289 * 84.99600 * 5 4 2 8 8 C 1.50697 * 109.47015 * 205.00057 * 5 4 2 9 9 O 1.21283 * 120.00261 * 359.97438 * 8 5 4 10 10 N 1.34777 * 120.00075 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00084 * 180.02562 * 10 8 5 12 12 C 1.52996 * 109.47249 * 179.97438 * 11 10 8 13 13 C 1.53953 * 113.73925 * 273.73941 * 12 11 10 14 14 N 1.47818 * 86.03562 * 222.08132 * 13 12 11 15 15 C 1.34770 * 134.45576 * 204.64413 * 14 13 12 16 16 O 1.21288 * 119.99951 * 179.86658 * 15 14 13 17 17 C 1.50698 * 120.00093 * 359.86766 * 15 14 13 18 18 S 1.81003 * 109.47061 * 179.97438 * 17 15 14 19 19 C 1.76199 * 100.00136 * 179.97438 * 18 17 15 20 20 H 1.08003 * 119.99658 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00198 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99991 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99695 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47466 * 90.00014 * 23 21 19 25 25 H 1.48502 * 109.46809 * 209.99711 * 23 21 19 26 26 H 1.48493 * 109.47250 * 329.99345 * 23 21 19 27 27 C 1.47590 * 91.04803 * 24.54703 * 14 13 12 28 28 H 1.08999 * 109.47029 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46883 * 299.99576 * 1 2 3 30 30 H 1.08998 * 109.47494 * 59.99969 * 1 2 3 31 31 H 0.96992 * 119.99904 * 359.97438 * 4 2 1 32 32 H 1.09002 * 109.47153 * 179.97438 * 7 5 4 33 33 H 1.09001 * 109.46832 * 60.00146 * 7 5 4 34 34 H 1.09004 * 109.47261 * 300.00128 * 7 5 4 35 35 H 0.96996 * 119.99636 * 359.97438 * 10 8 5 36 36 H 1.09001 * 109.47049 * 299.99628 * 11 10 8 37 37 H 1.09000 * 109.47381 * 59.99594 * 11 10 8 38 38 H 1.09008 * 112.94467 * 45.32751 * 12 11 10 39 39 H 1.08996 * 113.76994 * 336.34636 * 13 12 11 40 40 H 1.09003 * 113.76910 * 107.74566 * 13 12 11 41 41 H 1.09000 * 109.47064 * 299.99703 * 17 15 14 42 42 H 1.08996 * 109.47279 * 60.00022 * 17 15 14 43 43 H 0.96998 * 120.00086 * 180.02562 * 22 21 19 44 44 H 1.08997 * 113.76957 * 221.14691 * 27 14 13 45 45 H 1.09007 * 113.76619 * 89.75626 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 0.0000 6 1 4.0094 -0.3250 -0.5888 7 6 4.1554 -1.0423 1.4373 8 6 4.1485 -2.4544 -0.6011 9 8 3.3606 -3.2898 -0.9911 10 7 5.4736 -2.6777 -0.7044 11 6 5.9622 -3.9289 -1.2893 12 6 7.4922 -3.9290 -1.2886 13 6 8.1125 -3.2500 -2.5232 14 7 9.0732 -4.3734 -2.5309 15 6 10.3252 -4.5415 -3.0006 16 8 10.8884 -5.6062 -2.8582 17 6 11.0253 -3.4067 -3.7026 18 16 12.6787 -3.9399 -4.2108 19 6 13.2526 -2.4636 -4.9826 20 1 12.6148 -1.5930 -5.0243 21 6 14.5248 -2.4191 -5.5359 22 7 14.9533 -1.3163 -6.1129 23 14 15.6281 -3.9246 -5.4630 24 1 15.4031 -4.7621 -6.6685 25 1 17.0489 -3.4952 -5.4168 26 1 15.3096 -4.7133 -4.2458 27 6 8.1122 -5.2356 -1.8158 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 1.6959 -2.0072 -0.0005 32 1 5.2454 -1.0427 1.4377 33 1 3.7919 -1.8845 2.0260 34 1 3.7919 -0.1111 1.8721 35 1 6.1038 -2.0097 -0.3921 36 1 5.5983 -4.7714 -0.7011 37 1 5.5997 -4.0172 -2.3134 38 1 7.9167 -3.5921 -0.3428 39 1 7.4534 -3.2297 -3.3910 40 1 8.5677 -2.2827 -2.3104 41 1 10.4513 -3.1140 -4.5818 42 1 11.1102 -2.5573 -3.0249 43 1 15.8422 -1.2853 -6.4999 44 1 8.5670 -5.8507 -1.0394 45 1 7.4529 -5.7999 -2.4755 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738035626.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:20 Heat of formation + Delta-G solvation = -108.560156 kcal Electronic energy + Delta-G solvation = -26293.014893 eV Core-core repulsion = 22243.694406 eV Total energy + Delta-G solvation = -4049.320488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.62304 -41.18021 -40.09653 -38.97039 -36.08627 -35.80381 -34.69418 -32.84912 -32.10170 -30.33475 -29.56597 -27.90381 -27.23116 -26.88050 -24.98570 -22.07624 -21.74706 -21.27170 -20.40208 -19.56429 -18.86678 -18.05638 -17.95868 -17.24627 -17.13833 -17.04052 -16.81369 -16.53073 -16.26673 -16.11582 -15.75899 -15.30686 -14.97259 -14.85495 -14.68589 -14.35251 -14.17233 -13.82196 -13.69187 -13.51196 -13.47087 -13.37968 -13.24656 -13.03505 -12.98306 -12.93409 -12.66491 -12.61136 -12.36188 -11.89085 -11.87753 -11.19058 -11.09138 -11.02389 -10.89149 -10.57140 -10.26446 -10.11590 -9.79674 -9.03410 -8.53419 -6.25195 0.93077 1.30096 1.41617 1.46337 1.48496 1.52053 1.59168 1.82018 1.94869 2.23357 2.42456 2.64455 2.84809 3.22487 3.44261 3.59757 3.76415 3.91638 4.04357 4.05522 4.13177 4.15084 4.20027 4.38528 4.47071 4.49746 4.56510 4.60955 4.64099 4.67484 4.75918 4.78601 4.82512 4.88244 5.08993 5.17649 5.21556 5.33938 5.37670 5.68675 6.09011 6.41537 6.49500 6.52456 6.91587 7.03375 7.09458 7.19379 8.58873 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.020411 B = 0.001668 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.447787 B =16785.291537 C =17771.377653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.509 3.491 3 O -0.594 6.594 4 N -0.710 5.710 5 C 0.120 3.880 6 H 0.109 0.891 7 C -0.153 4.153 8 C 0.517 3.483 9 O -0.569 6.569 10 N -0.709 5.709 11 C 0.135 3.865 12 C -0.107 4.107 13 C 0.099 3.901 14 N -0.650 5.650 15 C 0.553 3.447 16 O -0.568 6.568 17 C -0.102 4.102 18 S -0.177 6.177 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.257 1.257 26 H -0.238 1.238 27 C 0.112 3.888 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.416 0.584 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.418 0.582 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.277 0.723 44 H 0.083 0.917 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.728 -1.175 17.306 35.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.298 3.702 3 O -0.475 6.475 4 N -0.365 5.365 5 C 0.012 3.988 6 H 0.127 0.873 7 C -0.212 4.212 8 C 0.302 3.698 9 O -0.449 6.449 10 N -0.362 5.362 11 C 0.011 3.989 12 C -0.126 4.126 13 C -0.023 4.023 14 N -0.386 5.386 15 C 0.342 3.658 16 O -0.447 6.447 17 C -0.252 4.252 18 S 0.050 5.950 19 C -0.678 4.678 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.553 5.553 23 Si 0.736 3.264 24 H -0.187 1.187 25 H -0.182 1.182 26 H -0.161 1.161 27 C -0.010 4.010 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.255 0.745 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.147 0.853 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -29.682 -2.535 17.059 34.328 hybrid contribution 0.383 1.003 -0.646 1.253 sum -29.298 -1.532 16.413 33.617 Atomic orbital electron populations 1.21879 0.88236 1.06235 1.06095 1.21540 0.92252 0.82494 0.73893 1.90720 1.71860 1.32877 1.52032 1.45977 1.05916 1.09903 1.74672 1.20825 0.82561 0.96021 0.99425 0.87285 1.22103 1.03063 1.03079 0.92944 1.20640 0.82973 0.88066 0.78075 1.90712 1.56182 1.47610 1.50352 1.45791 1.06414 1.21385 1.62595 1.21280 0.91392 0.86592 0.99601 1.23231 0.93964 0.95743 0.99697 1.23771 0.88294 0.91853 0.98359 1.50036 1.11663 1.18962 1.57963 1.19636 0.81050 0.87784 0.77329 1.90690 1.66255 1.29260 1.58464 1.23169 0.97843 1.00554 1.03670 1.84727 1.14025 1.21301 1.74988 1.22437 1.04314 0.98401 1.42601 0.91942 1.25547 0.98258 0.98962 0.93064 1.70010 1.19963 1.28353 1.36967 0.85875 0.79314 0.80028 0.81210 1.18732 1.18161 1.16148 1.23339 0.87868 0.94832 0.94944 0.88083 0.87651 0.88070 0.74541 0.88700 0.91306 0.91953 0.74417 0.89994 0.90865 0.85346 0.87943 0.88217 0.87508 0.87076 0.91312 0.89808 0.88114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.39 71.23 0.74 -0.18 16 2 C 0.51 7.04 7.90 87.66 0.69 7.74 16 3 O -0.59 -13.52 16.76 -3.05 -0.05 -13.57 16 4 N -0.71 -7.98 4.95 -446.09 -2.21 -10.19 16 5 C 0.12 1.27 2.98 44.24 0.13 1.40 16 6 H 0.11 1.34 7.58 -2.39 -0.02 1.32 16 7 C -0.15 -1.11 9.38 71.98 0.68 -0.43 16 8 C 0.52 5.98 7.22 87.66 0.63 6.62 16 9 O -0.57 -10.47 15.84 -3.04 -0.05 -10.52 16 10 N -0.71 -4.54 5.45 -463.07 -2.52 -7.06 16 11 C 0.14 0.97 5.51 86.38 0.48 1.45 16 12 C -0.11 -0.83 3.93 -10.13 -0.04 -0.87 16 13 C 0.10 1.23 8.19 86.44 0.71 1.93 16 14 N -0.65 -14.78 3.61 -835.81 -3.02 -17.80 16 15 C 0.55 19.34 8.07 87.66 0.71 20.05 16 16 O -0.57 -24.89 16.59 -3.06 -0.05 -24.94 16 17 C -0.10 -3.87 5.91 71.24 0.42 -3.45 16 18 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 19 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 20 H 0.06 3.83 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.77 5.50 84.86 0.47 3.24 16 22 N -0.92 -55.50 13.97 21.65 0.30 -55.20 16 23 Si 0.91 44.94 27.74 68.60 1.90 46.84 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 27 C 0.11 1.66 8.41 86.48 0.73 2.39 16 28 H 0.10 0.09 7.91 -2.39 -0.02 0.07 16 29 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 30 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.42 3.75 7.63 -92.71 -0.71 3.04 16 32 H 0.09 0.26 7.56 -2.39 -0.02 0.24 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 35 H 0.42 0.66 7.89 -92.71 -0.73 -0.07 16 36 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.07 0.67 7.87 -2.39 -0.02 0.65 16 38 H 0.13 0.68 8.14 -2.38 -0.02 0.66 16 39 H 0.10 1.08 7.92 -2.39 -0.02 1.06 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.25 8.10 -2.38 -0.02 1.24 16 Total: -1.00 -87.31 398.07 -0.18 -87.49 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -0.46 Total: 5.30 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.02 Total: 9.70 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -7.45 Total: -90.24 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -0.15 Total: -49.04 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -87.31 -0.18 -87.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738035626.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.072 kcal (2) G-P(sol) polarization free energy of solvation -87.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds