Wall clock time and date at job start Wed Apr 1 2020 02:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21275 * 119.99771 * 2 1 4 4 N 1.34774 * 119.99671 * 179.97438 * 2 1 3 5 5 C 1.46503 * 119.99616 * 180.02562 * 4 2 1 6 6 C 1.50700 * 109.46920 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00108 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99637 * 179.97438 * 6 5 4 9 9 C 1.46505 * 119.99606 * 180.02562 * 8 6 5 10 10 H 1.08998 * 112.90731 * 23.75560 * 9 8 6 11 11 C 1.53778 * 113.61223 * 155.00256 * 9 8 6 12 12 C 1.53785 * 87.07976 * 89.11698 * 11 9 8 13 13 H 1.09005 * 113.61502 * 270.79915 * 12 11 9 14 14 C 1.53004 * 113.61568 * 139.98012 * 12 11 9 15 15 N 1.46499 * 109.47198 * 175.00089 * 14 12 11 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 S 1.81005 * 109.46906 * 179.97438 * 18 16 15 20 20 C 1.76201 * 99.99828 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00390 * 359.97438 * 20 19 18 22 22 C 1.38797 * 119.99869 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00277 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46770 * 60.00115 * 24 22 20 26 26 H 1.48499 * 109.47505 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.46733 * 300.00357 * 24 22 20 28 28 C 1.53776 * 113.61612 * 252.50171 * 9 8 6 29 29 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47207 * 300.00882 * 1 2 3 31 31 H 1.08997 * 109.46871 * 60.00198 * 1 2 3 32 32 H 0.96997 * 120.00590 * 359.97438 * 4 2 1 33 33 H 1.08998 * 109.47032 * 59.99990 * 5 4 2 34 34 H 1.08998 * 109.46702 * 299.99963 * 5 4 2 35 35 H 0.96992 * 120.00488 * 0.02562 * 8 6 5 36 36 H 1.08997 * 113.61793 * 334.56970 * 11 9 8 37 37 H 1.08999 * 113.69099 * 203.67641 * 11 9 8 38 38 H 1.09009 * 109.46730 * 54.99876 * 14 12 11 39 39 H 1.08998 * 109.46846 * 295.00421 * 14 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 41 41 H 1.09003 * 109.47112 * 299.99065 * 18 16 15 42 42 H 1.08993 * 109.47916 * 59.99687 * 18 16 15 43 43 H 0.97008 * 120.00004 * 179.97438 * 23 22 20 44 44 H 1.08997 * 113.61844 * 156.33745 * 28 9 8 45 45 H 1.09007 * 113.61444 * 25.43063 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1672 0.0011 6 6 4.1482 -2.5880 0.0022 7 8 3.3601 -3.5098 0.0021 8 7 5.4733 -2.8343 0.0024 9 6 5.9616 -4.2155 0.0029 10 1 5.2366 -4.9220 -0.4013 11 6 7.3710 -4.3709 -0.5924 12 6 7.9118 -4.1228 0.8257 13 1 8.0830 -3.0699 1.0498 14 6 9.1041 -5.0094 1.1908 15 7 9.6193 -4.6182 2.5052 16 6 10.6794 -5.2622 3.0324 17 8 11.2037 -6.1689 2.4209 18 6 11.2131 -4.8557 4.3818 19 16 12.6273 -5.9007 4.8110 20 6 13.0394 -5.2262 6.3858 21 1 12.4625 -4.4078 6.7904 22 6 14.1054 -5.7467 7.1063 23 7 14.8089 -6.7438 6.6129 24 14 14.5428 -5.0312 8.7755 25 1 13.3848 -5.1744 9.6942 26 1 15.7115 -5.7570 9.3345 27 1 14.8799 -3.5928 8.6245 28 6 6.5663 -4.6546 1.3469 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6959 -2.0073 0.0013 33 1 4.0089 -0.6532 0.8911 34 1 4.0095 -0.6536 -0.8889 35 1 6.1036 -2.0971 0.0021 36 1 7.6336 -3.5873 -1.3031 37 1 7.5790 -5.3719 -0.9701 38 1 9.8882 -4.8899 0.4429 39 1 8.7862 -6.0516 1.2205 40 1 9.2001 -3.8928 2.9941 41 1 11.5284 -3.8128 4.3487 42 1 10.4322 -4.9755 5.1327 43 1 15.5542 -7.1074 7.1163 44 1 6.5531 -5.7337 1.5000 45 1 6.1793 -4.1001 2.2019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756240550.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:20 Heat of formation + Delta-G solvation = -128.925075 kcal Electronic energy + Delta-G solvation = -25753.598967 eV Core-core repulsion = 21703.395390 eV Total energy + Delta-G solvation = -4050.203577 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58584 -40.78452 -40.31629 -39.32713 -35.82511 -35.49516 -34.58270 -34.25587 -31.54918 -31.16760 -28.78313 -27.76322 -27.38363 -26.65661 -23.64003 -22.17762 -21.74238 -21.64523 -20.35428 -19.73431 -18.78755 -17.81975 -17.58523 -17.45030 -17.02091 -17.01405 -16.87427 -16.69748 -16.45628 -15.95350 -15.83416 -15.44003 -15.11813 -14.82511 -14.63001 -14.47698 -14.18243 -13.98686 -13.90599 -13.46455 -13.38345 -13.30419 -13.16743 -12.95018 -12.88216 -12.82383 -12.63595 -11.99835 -11.76783 -11.63469 -11.27082 -11.16625 -11.12701 -11.07914 -10.87947 -10.31579 -10.27547 -10.12628 -10.03607 -8.66454 -8.34298 -6.12552 1.27756 1.40558 1.44023 1.47595 1.57361 1.58599 1.63523 1.74653 2.27032 2.33206 2.45285 2.99836 3.32201 3.48445 3.54501 3.59014 3.81723 3.86053 3.94971 4.04436 4.28991 4.30309 4.33401 4.34662 4.51551 4.51815 4.58883 4.67007 4.68058 4.82230 4.85132 4.87489 5.05274 5.06579 5.12050 5.19076 5.27076 5.41690 5.47524 5.60953 6.19721 6.39428 6.45841 6.53770 7.06925 7.06940 7.15303 7.27632 8.74646 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017748 B = 0.001481 C = 0.001392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.240042 B =18896.195103 C =20108.282545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.509 3.491 3 O -0.596 6.596 4 N -0.717 5.717 5 C 0.097 3.903 6 C 0.516 3.484 7 O -0.571 6.571 8 N -0.693 5.693 9 C 0.120 3.880 10 H 0.092 0.908 11 C -0.124 4.124 12 C -0.111 4.111 13 H 0.118 0.882 14 C 0.129 3.871 15 N -0.710 5.710 16 C 0.531 3.469 17 O -0.568 6.568 18 C -0.130 4.130 19 S -0.153 6.153 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.015 3.985 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 C -0.146 4.146 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.417 0.583 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.419 0.581 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.088 0.912 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.483 13.730 -15.949 35.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.298 3.702 3 O -0.477 6.477 4 N -0.372 5.372 5 C -0.030 4.030 6 C 0.303 3.697 7 O -0.450 6.450 8 N -0.345 5.345 9 C 0.014 3.986 10 H 0.110 0.890 11 C -0.162 4.162 12 C -0.130 4.130 13 H 0.136 0.864 14 C 0.005 3.995 15 N -0.364 5.364 16 C 0.317 3.683 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.074 5.926 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.819 3.181 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.186 1.186 28 C -0.184 4.184 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.123 0.877 32 H 0.256 0.744 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.257 0.743 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.253 0.747 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.106 0.894 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -27.622 12.179 -16.973 34.632 hybrid contribution 0.078 1.150 1.875 2.201 sum -27.544 13.329 -15.098 34.122 Atomic orbital electron populations 1.21883 0.88160 1.06226 1.06207 1.21519 0.92270 0.82308 0.74063 1.90721 1.71927 1.32910 1.52151 1.45945 1.06254 1.10093 1.74944 1.21135 0.82607 0.93279 1.05962 1.20680 0.82943 0.91064 0.75009 1.90709 1.56070 1.46994 1.51261 1.45461 1.06427 1.08825 1.73782 1.21784 0.96017 0.83419 0.97341 0.89028 1.23264 0.92664 1.04564 0.95748 1.22855 0.92027 1.00428 0.97650 0.86417 1.21444 0.95947 0.98734 0.83355 1.45748 1.31472 1.38079 1.21117 1.20064 0.80110 0.81593 0.86547 1.90693 1.59732 1.31407 1.62847 1.23380 1.02411 1.04903 0.97446 1.85576 1.35341 1.47574 1.24104 1.23182 1.19572 1.22434 1.04422 0.89902 1.26116 0.94840 0.95012 1.03063 1.70180 1.19433 1.25133 1.40018 0.85016 0.78004 0.78544 0.76503 1.18699 1.20404 1.18638 1.23515 0.95369 1.01944 0.97603 0.88179 0.87812 0.87686 0.74384 0.87389 0.87157 0.74292 0.88715 0.88006 0.92151 0.92498 0.74735 0.87179 0.87361 0.91994 0.89394 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.39 71.24 0.74 -0.08 16 2 C 0.51 6.66 7.94 87.66 0.70 7.35 16 3 O -0.60 -13.09 17.10 -3.01 -0.05 -13.14 16 4 N -0.72 -7.61 5.53 -466.78 -2.58 -10.19 16 5 C 0.10 0.87 6.15 85.63 0.53 1.40 16 6 C 0.52 5.80 7.90 87.66 0.69 6.49 16 7 O -0.57 -10.60 15.27 -3.03 -0.05 -10.65 16 8 N -0.69 -4.83 5.26 -440.04 -2.32 -7.14 16 9 C 0.12 1.14 4.32 45.51 0.20 1.34 16 10 H 0.09 1.22 7.47 -2.39 -0.02 1.21 16 11 C -0.12 -0.91 7.39 31.12 0.23 -0.68 16 12 C -0.11 -1.05 3.63 -10.26 -0.04 -1.08 16 13 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 14 C 0.13 2.38 5.51 86.38 0.48 2.85 16 15 N -0.71 -16.00 5.56 -463.05 -2.57 -18.57 16 16 C 0.53 18.86 7.85 87.66 0.69 19.55 16 17 O -0.57 -25.84 15.86 -3.04 -0.05 -25.89 16 18 C -0.13 -5.02 6.16 71.24 0.44 -4.59 16 19 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 20 C -0.55 -31.14 9.50 67.95 0.65 -30.50 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.82 5.49 84.86 0.47 1.29 16 23 N -0.91 -55.85 13.22 21.65 0.29 -55.57 16 24 Si 1.00 43.27 29.55 68.60 2.03 45.30 16 25 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 C -0.15 -1.58 7.43 31.12 0.23 -1.35 16 29 H 0.10 0.06 7.91 -2.39 -0.02 0.04 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.42 3.86 7.27 -92.71 -0.67 3.19 16 33 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.42 0.62 8.70 -92.71 -0.81 -0.18 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.82 8.10 -2.39 -0.02 0.80 16 38 H 0.06 1.25 8.14 -2.38 -0.02 1.24 16 39 H 0.06 1.22 7.84 -2.39 -0.02 1.21 16 40 H 0.42 6.44 8.47 -92.71 -0.79 5.65 16 41 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 43 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 44 H 0.09 1.15 7.90 -2.39 -0.02 1.13 16 45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -87.98 400.11 -1.70 -89.68 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -1.23 Total: 13.79 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.99 Total: 2.00 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -7.18 Total: -91.47 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.15 Total: -49.68 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -87.98 -1.70 -89.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756240550.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.249 kcal (2) G-P(sol) polarization free energy of solvation -87.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds