Wall clock time and date at job start Wed Apr 1 2020 01:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47536 * 2 1 4 4 C 1.53000 * 109.46958 * 240.00246 * 2 1 3 5 5 N 1.46499 * 109.47049 * 184.99723 * 4 2 1 6 6 C 1.46499 * 120.00427 * 269.99889 * 5 4 2 7 7 C 1.34780 * 119.99654 * 90.00657 * 5 4 2 8 8 O 1.21283 * 120.00321 * 359.97438 * 7 5 4 9 9 C 1.50707 * 119.99714 * 180.02562 * 7 5 4 10 10 S 1.81001 * 109.46858 * 179.97438 * 9 7 5 11 11 C 1.76199 * 99.99848 * 179.97438 * 10 9 7 12 12 H 1.08004 * 120.00177 * 359.97438 * 11 10 9 13 13 C 1.38798 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00298 * 180.02562 * 13 11 10 15 15 Si 1.86803 * 119.99999 * 359.72259 * 13 11 10 16 16 H 1.48501 * 109.47085 * 270.27637 * 15 13 11 17 17 H 1.48505 * 109.46880 * 30.27468 * 15 13 11 18 18 H 1.48490 * 109.47245 * 150.27795 * 15 13 11 19 19 N 1.46507 * 109.47420 * 120.00320 * 2 1 3 20 20 C 1.34767 * 119.99803 * 275.00131 * 19 2 1 21 21 O 1.21281 * 120.00445 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99824 * 180.02562 * 20 19 2 23 23 H 1.08997 * 110.21375 * 319.29252 * 22 20 19 24 24 C 1.54474 * 110.24740 * 81.22721 * 22 20 19 25 25 C 1.54762 * 101.70465 * 144.36088 * 24 22 20 26 26 C 1.51276 * 104.23327 * 335.30416 * 25 24 22 27 27 O 1.21281 * 124.93913 * 196.17004 * 26 25 24 28 28 N 1.34418 * 110.11721 * 16.18726 * 26 25 24 29 29 H 1.08996 * 109.47579 * 59.99659 * 1 2 3 30 30 H 1.08999 * 109.47536 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46819 * 299.99584 * 1 2 3 32 32 H 1.09004 * 109.47108 * 64.99786 * 4 2 1 33 33 H 1.09004 * 109.47246 * 304.99886 * 4 2 1 34 34 H 1.09001 * 109.46973 * 270.00351 * 6 5 4 35 35 H 1.09005 * 109.46857 * 30.00341 * 6 5 4 36 36 H 1.09000 * 109.47060 * 150.00147 * 6 5 4 37 37 H 1.08998 * 109.47313 * 59.99420 * 9 7 5 38 38 H 1.08997 * 109.47092 * 299.99044 * 9 7 5 39 39 H 0.96999 * 120.00168 * 179.72505 * 14 13 11 40 40 H 0.96997 * 119.99635 * 94.99590 * 19 2 1 41 41 H 1.09006 * 110.96919 * 262.53741 * 24 22 20 42 42 H 1.09001 * 110.96936 * 26.29616 * 24 22 20 43 43 H 1.08996 * 110.51670 * 216.58435 * 25 24 22 44 44 H 1.08997 * 110.52265 * 94.02548 * 25 24 22 45 45 H 0.97003 * 124.34676 * 180.38344 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 3.5000 -0.8263 -1.1907 6 6 4.3343 0.2341 -1.7614 7 6 4.0756 -1.8987 -0.6118 8 8 3.3850 -2.7765 -0.1390 9 6 5.5776 -2.0065 -0.5510 10 16 6.0387 -3.5467 0.2806 11 6 7.7946 -3.4171 0.2129 12 1 8.2552 -2.5573 -0.2509 13 6 8.5859 -4.4200 0.7556 14 7 9.8977 -4.3230 0.7055 15 14 7.7894 -5.9034 1.5647 16 1 7.5761 -5.6252 3.0077 17 1 6.4826 -6.1791 0.9153 18 1 8.6760 -7.0849 1.4141 19 7 2.0184 -0.6907 1.1962 20 6 2.1471 -0.0184 2.3571 21 8 1.8590 1.1584 2.4115 22 6 2.6501 -0.7288 3.5874 23 1 2.2132 -1.7253 3.6520 24 6 4.1917 -0.8217 3.5583 25 6 4.5443 -0.6593 5.0565 26 6 3.3694 0.0977 5.6352 27 8 3.3693 0.6671 6.7060 28 7 2.3253 0.0470 4.7901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7198 -1.2952 34 1 4.5423 0.0094 -2.8074 35 1 3.8090 1.1867 -1.6919 36 1 5.2721 0.2952 -1.2093 37 1 5.9805 -1.1595 0.0042 38 1 5.9833 -2.0040 -1.5626 39 1 10.4507 -5.0219 1.0883 40 1 2.2490 -1.6318 1.1525 41 1 4.5171 -1.7918 3.1825 42 1 4.6202 -0.0124 2.9671 43 1 5.4631 -0.0844 5.1725 44 1 4.6426 -1.6342 5.5338 45 1 1.4673 0.4687 4.9544 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756432712.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:37 Heat of formation + Delta-G solvation = -107.327559 kcal Electronic energy + Delta-G solvation = -28868.926204 eV Core-core repulsion = 24819.659166 eV Total energy + Delta-G solvation = -4049.267038 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.98475 -40.07917 -39.02427 -36.65806 -36.02529 -34.86667 -32.53072 -31.85939 -31.28352 -29.79429 -28.16907 -27.49379 -25.86029 -25.49357 -23.23584 -21.69963 -20.68170 -20.51360 -19.57867 -18.10127 -17.75927 -17.38821 -16.90908 -16.57740 -16.08595 -15.91161 -15.47804 -15.06247 -15.01437 -14.60134 -14.14931 -13.99946 -13.80090 -13.71375 -13.44524 -13.30181 -13.13916 -12.89332 -12.86231 -12.71050 -12.62184 -12.45810 -12.20975 -12.05265 -11.94520 -11.40946 -11.36258 -11.24342 -11.10351 -10.71256 -10.21094 -9.97256 -9.95524 -9.73940 -9.32610 -9.23857 -9.10155 -8.79588 -8.63322 -7.04689 -6.37644 -4.11278 2.34951 2.44429 2.53502 2.64478 2.82417 3.06703 3.23625 3.35108 3.39909 3.48162 4.21176 4.22650 4.25397 4.43583 4.47572 4.57688 4.74831 4.77490 4.83595 4.91751 5.01219 5.01312 5.03861 5.16057 5.24854 5.26751 5.36234 5.44764 5.52850 5.63229 5.65522 5.69926 5.80633 5.84056 5.87219 5.88884 6.20253 6.39836 6.56769 6.84777 7.18896 7.35842 7.85034 7.99330 8.13055 8.18684 8.33252 9.07937 10.71579 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.004439 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.329035 B = 6306.604631 C = 8691.375947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.088 0.912 4 C 0.106 3.894 5 N -0.619 5.619 6 C 0.077 3.923 7 C 0.537 3.463 8 O -0.525 6.525 9 C -0.125 4.125 10 S -0.138 6.138 11 C -0.523 4.523 12 H 0.088 0.912 13 C 0.097 3.903 14 N -0.878 5.878 15 Si 0.855 3.145 16 H -0.266 1.266 17 H -0.236 1.236 18 H -0.274 1.274 19 N -0.714 5.714 20 C 0.509 3.491 21 O -0.538 6.538 22 C 0.113 3.887 23 H 0.106 0.894 24 C -0.122 4.122 25 C -0.154 4.154 26 C 0.525 3.475 27 O -0.535 6.535 28 N -0.710 5.710 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.414 0.586 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.112 0.888 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 7.910 -3.333 18.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.106 0.894 4 C -0.018 4.018 5 N -0.354 5.354 6 C -0.066 4.066 7 C 0.326 3.674 8 O -0.401 6.401 9 C -0.275 4.275 10 S 0.088 5.912 11 C -0.671 4.671 12 H 0.106 0.894 13 C -0.112 4.112 14 N -0.514 5.514 15 Si 0.680 3.320 16 H -0.191 1.191 17 H -0.160 1.160 18 H -0.200 1.200 19 N -0.371 5.371 20 C 0.293 3.707 21 O -0.415 6.415 22 C 0.003 3.997 23 H 0.124 0.876 24 C -0.160 4.160 25 C -0.194 4.194 26 C 0.311 3.689 27 O -0.412 6.412 28 N -0.366 5.366 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.255 0.745 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -17.447 7.617 -2.035 19.146 hybrid contribution 0.537 0.182 -0.413 0.701 sum -16.910 7.800 -2.448 18.783 Atomic orbital electron populations 1.22117 0.94547 1.02573 1.02771 1.21421 0.94315 0.97786 0.84514 0.89389 1.21818 0.80385 1.02690 0.96882 1.47826 1.06093 1.21890 1.59555 1.21850 0.95824 0.90084 0.98883 1.20359 0.90317 0.80344 0.76358 1.90592 1.64449 1.38911 1.46159 1.23338 0.93382 1.05040 1.05732 1.84682 1.08070 1.22681 1.75768 1.22281 0.88018 1.11443 1.45334 0.89425 1.24707 0.94214 0.97714 0.94526 1.69932 1.03438 1.34394 1.43669 0.86765 0.81457 0.82574 0.81197 1.19139 1.15957 1.19970 1.46317 1.66413 1.15504 1.08911 1.20682 0.77637 0.87429 0.84912 1.90707 1.50020 1.15670 1.85086 1.21615 0.98468 0.95512 0.84086 0.87605 1.22672 0.90544 1.06039 0.96732 1.22392 0.98377 1.02942 0.95710 1.20915 0.85084 0.79244 0.83625 1.90751 1.83122 1.45496 1.21832 1.45928 1.16376 1.54948 1.19306 0.91417 0.92004 0.91804 0.88935 0.88955 0.92227 0.91125 0.90444 0.88499 0.88471 0.91854 0.74517 0.86800 0.89576 0.87357 0.87022 0.74832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.13 1.14 2.88 -67.93 -0.20 0.95 16 3 H 0.09 0.89 7.58 -51.93 -0.39 0.50 16 4 C 0.11 0.89 5.14 -4.04 -0.02 0.87 16 5 N -0.62 -6.43 2.77 -181.56 -0.50 -6.93 16 6 C 0.08 0.62 10.24 59.85 0.61 1.23 16 7 C 0.54 7.64 6.99 -10.98 -0.08 7.57 16 8 O -0.53 -8.54 13.18 5.56 0.07 -8.47 16 9 C -0.12 -2.06 4.71 36.01 0.17 -1.89 16 10 S -0.14 -3.05 18.55 -107.50 -1.99 -5.04 16 11 C -0.52 -13.85 10.04 30.94 0.31 -13.54 16 12 H 0.09 2.46 8.03 -52.48 -0.42 2.03 16 13 C 0.10 2.66 5.50 -17.43 -0.10 2.57 16 14 N -0.88 -25.20 13.97 55.49 0.78 -24.43 16 15 Si 0.86 20.20 27.74 -169.99 -4.71 15.49 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.24 -5.49 6.74 56.52 0.38 -5.11 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 19 N -0.71 -7.65 4.48 -53.80 -0.24 -7.89 16 20 C 0.51 6.08 6.99 -10.99 -0.08 6.01 16 21 O -0.54 -7.97 16.22 5.56 0.09 -7.88 16 22 C 0.11 1.20 3.92 -68.16 -0.27 0.93 16 23 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 24 C -0.12 -1.33 6.69 -25.03 -0.17 -1.49 16 25 C -0.15 -1.70 6.86 -26.67 -0.18 -1.89 16 26 C 0.52 7.13 8.43 -10.86 -0.09 7.03 16 27 O -0.54 -9.31 18.03 5.56 0.10 -9.21 16 28 N -0.71 -8.31 5.46 -53.89 -0.29 -8.60 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 33 H 0.09 0.86 7.42 -51.93 -0.39 0.48 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 36 H 0.08 0.67 6.44 -51.93 -0.33 0.34 16 37 H 0.10 1.50 7.40 -51.92 -0.38 1.12 16 38 H 0.10 1.55 8.11 -51.92 -0.42 1.13 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.41 4.78 5.82 -40.82 -0.24 4.54 16 41 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 43 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.41 4.60 8.95 -40.82 -0.37 4.24 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -34.25 386.48 -7.34 -41.60 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.73 Total: 8.09 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 0.27 Total: 7.46 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: -0.26 Total: -47.86 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: 0.26 Total: -25.55 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.71 Total: 15.49 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -1.99 Total: -5.04 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.25 -7.34 -41.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432712.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.732 kcal (2) G-P(sol) polarization free energy of solvation -34.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds