Wall clock time and date at job start Wed Apr 1 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47221 * 119.99765 * 2 1 3 5 5 N 1.46500 * 109.47232 * 175.00240 * 4 2 1 6 6 C 1.46506 * 119.99822 * 269.99994 * 5 4 2 7 7 C 1.34769 * 120.00241 * 90.00321 * 5 4 2 8 8 O 1.21282 * 119.99850 * 359.97438 * 7 5 4 9 9 C 1.50702 * 120.00466 * 179.97438 * 7 5 4 10 10 S 1.81000 * 109.47238 * 179.97438 * 9 7 5 11 11 C 1.76205 * 99.99610 * 179.97438 * 10 9 7 12 12 H 1.07998 * 120.00040 * 0.02562 * 11 10 9 13 13 C 1.38796 * 119.99527 * 179.97438 * 11 10 9 14 14 N 1.31638 * 119.99705 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00469 * 0.02562 * 13 11 10 16 16 H 1.48492 * 109.47396 * 89.99459 * 15 13 11 17 17 H 1.48500 * 109.47341 * 210.00010 * 15 13 11 18 18 H 1.48511 * 109.46852 * 329.99621 * 15 13 11 19 19 N 1.46504 * 109.47173 * 240.00021 * 2 1 3 20 20 C 1.34769 * 119.99855 * 84.99986 * 19 2 1 21 21 O 1.21278 * 120.00382 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99924 * 179.97438 * 20 19 2 23 23 H 1.09003 * 110.21239 * 319.30220 * 22 20 19 24 24 C 1.54484 * 110.24341 * 81.22593 * 22 20 19 25 25 C 1.54634 * 101.76209 * 93.58751 * 24 22 20 26 26 C 1.51277 * 104.19400 * 24.79588 * 25 24 22 27 27 O 1.21290 * 124.93908 * 163.75059 * 26 25 24 28 28 N 1.34621 * 110.15348 * 343.77168 * 26 25 24 29 29 H 1.08998 * 109.47270 * 299.99975 * 1 2 3 30 30 H 1.09004 * 109.47326 * 60.00154 * 1 2 3 31 31 H 1.09000 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47087 * 54.99993 * 4 2 1 33 33 H 1.08999 * 109.47095 * 295.00574 * 4 2 1 34 34 H 1.08998 * 109.47145 * 270.00037 * 6 5 4 35 35 H 1.08996 * 109.46927 * 29.99844 * 6 5 4 36 36 H 1.08998 * 109.46879 * 150.00184 * 6 5 4 37 37 H 1.09004 * 109.46923 * 59.99646 * 9 7 5 38 38 H 1.09004 * 109.46818 * 300.00196 * 9 7 5 39 39 H 0.96996 * 119.99710 * 180.02562 * 14 13 11 40 40 H 0.97000 * 119.99517 * 264.99853 * 19 2 1 41 41 H 1.08991 * 110.97074 * 211.70134 * 24 22 20 42 42 H 1.09002 * 110.97247 * 335.43675 * 24 22 20 43 43 H 1.08996 * 110.48770 * 143.47689 * 25 24 22 44 44 H 1.09002 * 110.48669 * 265.98898 * 25 24 22 45 45 H 0.97001 * 124.47236 * 179.54203 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1906 6 6 4.1259 -1.9919 0.5613 7 6 4.2675 0.1492 1.7156 8 8 3.7494 1.1144 2.2363 9 6 5.7695 0.0409 1.6558 10 16 6.5109 1.4951 2.4380 11 6 8.2192 1.1152 2.2327 12 1 8.5135 0.2004 1.7398 13 6 9.1865 1.9922 2.7035 14 7 10.4627 1.7087 2.5497 15 14 8.6774 3.5747 3.5554 16 1 8.5436 3.3308 5.0141 17 1 9.7085 4.6173 3.3204 18 1 7.3752 4.0343 3.0089 19 7 2.0183 -0.6906 -1.1962 20 6 2.1470 -0.0183 -2.3571 21 8 1.8582 1.1583 -2.4117 22 6 2.6500 -0.7286 -3.5875 23 1 3.4659 -1.4025 -3.3262 24 6 1.5014 -1.5145 -4.2580 25 6 0.9872 -0.4939 -5.2997 26 6 2.1781 0.4017 -5.5607 27 8 2.2893 1.1512 -6.5078 28 7 3.0972 0.2460 -4.5895 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1369 34 1 4.2823 -2.7687 1.3097 35 1 3.4757 -2.3721 -0.2266 36 1 5.0851 -1.7020 0.1325 37 1 6.0886 -0.0138 0.6150 38 1 6.0901 -0.8583 2.1820 39 1 11.1387 2.3214 2.8791 40 1 2.2490 -1.6318 -1.1526 41 1 1.8769 -2.4140 -4.7456 42 1 0.7233 -1.7607 -3.5354 43 1 0.6846 -1.0026 -6.2150 44 1 0.1564 0.0819 -4.8919 45 1 3.9450 0.7161 -4.5554 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756432717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:39 Heat of formation + Delta-G solvation = -133.851624 kcal Electronic energy + Delta-G solvation = -28089.073865 eV Core-core repulsion = 24038.656657 eV Total energy + Delta-G solvation = -4050.417208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96019 -41.03839 -40.04810 -37.78186 -37.08456 -35.59789 -34.69300 -32.86872 -32.19101 -31.00578 -29.00518 -28.19504 -27.87830 -26.49307 -24.23727 -22.57948 -21.66763 -21.40885 -20.79957 -19.62409 -18.75324 -18.59589 -18.12004 -17.38071 -17.18655 -17.01336 -16.89681 -16.37509 -16.00466 -15.91872 -15.64897 -14.99434 -14.86500 -14.85459 -14.64739 -14.55292 -14.28454 -13.85226 -13.75013 -13.60159 -13.54369 -13.37712 -13.22346 -13.04697 -12.93222 -12.86036 -12.58787 -12.46944 -12.22298 -12.07469 -11.89855 -11.38787 -11.19524 -11.05249 -10.97097 -10.53531 -10.23625 -10.14256 -9.64553 -9.02614 -8.54309 -6.24656 0.96664 1.27706 1.38686 1.44074 1.51698 1.53040 1.55063 1.97803 2.11368 2.22201 2.44820 2.67304 2.84297 3.29932 3.48442 3.58104 3.62546 3.81781 3.93926 4.07759 4.15168 4.23347 4.25403 4.34260 4.41476 4.46071 4.58230 4.66371 4.73379 4.77655 4.84420 4.94699 4.97833 5.02340 5.08706 5.25719 5.44813 5.57356 5.66958 5.68519 5.90157 6.08816 6.21233 6.52078 6.91710 7.09675 7.10397 7.25494 8.57940 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012416 B = 0.002790 C = 0.002493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2254.552803 B =10031.723533 C =11228.881236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.129 3.871 3 H 0.038 0.962 4 C 0.112 3.888 5 N -0.606 5.606 6 C 0.066 3.934 7 C 0.528 3.472 8 O -0.564 6.564 9 C -0.104 4.104 10 S -0.187 6.187 11 C -0.524 4.524 12 H 0.065 0.935 13 C 0.047 3.953 14 N -0.916 5.916 15 Si 0.911 3.089 16 H -0.260 1.260 17 H -0.260 1.260 18 H -0.242 1.242 19 N -0.698 5.698 20 C 0.494 3.506 21 O -0.582 6.582 22 C 0.111 3.889 23 H 0.156 0.844 24 C -0.103 4.103 25 C -0.155 4.155 26 C 0.511 3.489 27 O -0.591 6.591 28 N -0.713 5.713 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.277 0.723 40 H 0.418 0.582 41 H 0.134 0.866 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.100 0.900 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.180 -19.661 -10.291 32.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.023 3.977 3 H 0.057 0.943 4 C -0.011 4.011 5 N -0.339 5.339 6 C -0.076 4.076 7 C 0.316 3.684 8 O -0.442 6.442 9 C -0.254 4.254 10 S 0.039 5.961 11 C -0.671 4.671 12 H 0.084 0.916 13 C -0.158 4.158 14 N -0.554 5.554 15 Si 0.733 3.267 16 H -0.185 1.185 17 H -0.185 1.185 18 H -0.166 1.166 19 N -0.354 5.354 20 C 0.279 3.721 21 O -0.461 6.461 22 C 0.002 3.998 23 H 0.174 0.826 24 C -0.140 4.140 25 C -0.194 4.194 26 C 0.300 3.700 27 O -0.472 6.472 28 N -0.366 5.366 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.155 0.845 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.258 0.742 41 H 0.152 0.848 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.119 0.881 45 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -24.005 -17.089 -10.033 31.127 hybrid contribution 1.839 0.246 -0.063 1.857 sum -22.165 -16.843 -10.096 29.613 Atomic orbital electron populations 1.22023 0.92684 1.04123 1.02118 1.21262 0.95478 0.96200 0.84809 0.94350 1.21954 0.78487 1.03804 0.96840 1.47765 1.06487 1.21504 1.58160 1.22269 0.99553 0.86620 0.99167 1.20067 0.88373 0.82470 0.77531 1.90696 1.75040 1.32871 1.45637 1.23271 0.94584 1.02209 1.05363 1.84850 1.03205 1.29798 1.78228 1.22418 0.90193 1.10258 1.44261 0.91638 1.25506 0.94140 1.00854 0.95309 1.70005 1.00502 1.38701 1.46162 0.85919 0.80344 0.80135 0.80313 1.18499 1.18450 1.16565 1.45931 1.66706 1.14565 1.08190 1.21683 0.77280 0.87171 0.85948 1.90772 1.51159 1.18587 1.85587 1.21972 1.01761 0.90205 0.85833 0.82644 1.22750 0.96033 0.97584 0.97660 1.22411 0.95682 0.97774 1.03577 1.21770 0.85843 0.81813 0.80614 1.90725 1.80574 1.42204 1.33671 1.46170 1.21140 1.45211 1.24037 0.91448 0.93759 0.88579 0.84544 0.90196 0.90209 0.87332 0.91123 0.87356 0.86722 0.91367 0.74187 0.84783 0.86296 0.85615 0.88149 0.75078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.48 71.98 0.68 -1.17 16 2 C 0.13 2.12 2.88 44.99 0.13 2.25 16 3 H 0.04 1.12 7.58 -2.39 -0.02 1.10 16 4 C 0.11 1.56 5.05 86.38 0.44 2.00 16 5 N -0.61 -11.30 2.73 -846.76 -2.31 -13.61 16 6 C 0.07 0.56 9.86 127.77 1.26 1.82 16 7 C 0.53 17.11 7.69 87.66 0.67 17.78 16 8 O -0.56 -23.64 15.44 -3.04 -0.05 -23.69 16 9 C -0.10 -3.73 4.71 71.24 0.34 -3.39 16 10 S -0.19 -9.47 18.55 -56.49 -1.05 -10.51 16 11 C -0.52 -30.16 10.04 67.95 0.68 -29.48 16 12 H 0.07 3.93 8.03 -2.91 -0.02 3.91 16 13 C 0.05 2.78 5.50 84.86 0.47 3.25 16 14 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 15 Si 0.91 45.44 27.74 68.60 1.90 47.34 16 16 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 18 H -0.24 -12.22 6.74 99.48 0.67 -11.54 16 19 N -0.70 -7.11 4.52 -442.54 -2.00 -9.11 16 20 C 0.49 8.17 6.97 87.66 0.61 8.78 16 21 O -0.58 -17.44 16.23 -3.02 -0.05 -17.49 16 22 C 0.11 0.97 3.92 44.70 0.18 1.14 16 23 H 0.16 0.10 8.14 -2.39 -0.02 0.08 16 24 C -0.10 -0.22 6.69 31.66 0.21 -0.01 16 25 C -0.15 -1.68 6.85 30.59 0.21 -1.47 16 26 C 0.51 11.35 8.44 87.86 0.74 12.09 16 27 O -0.59 -19.56 18.03 -3.06 -0.06 -19.62 16 28 N -0.71 -12.68 5.47 -442.69 -2.42 -15.10 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.14 0.51 8.07 -2.38 -0.02 0.49 16 33 H 0.08 1.55 7.42 -2.39 -0.02 1.53 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.11 -0.09 5.62 -2.39 -0.01 -0.10 16 36 H 0.07 0.78 6.44 -2.39 -0.02 0.77 16 37 H 0.11 3.61 7.40 -2.39 -0.02 3.59 16 38 H 0.11 3.70 8.11 -2.39 -0.02 3.68 16 39 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 40 H 0.42 0.35 6.13 -92.71 -0.57 -0.22 16 41 H 0.13 -0.54 8.14 -2.39 -0.02 -0.56 16 42 H 0.12 -0.21 7.89 -2.39 -0.02 -0.23 16 43 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.41 7.87 8.96 -92.71 -0.83 7.03 16 Total: -1.00 -98.38 386.82 0.48 -97.89 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -0.40 Total: 5.50 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 6.62 Total: 13.58 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -6.43 Total: -93.01 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: -0.15 Total: -60.79 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.05 Total: -10.51 kcal Total: -98.38 0.48 -97.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756432717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.957 kcal (2) G-P(sol) polarization free energy of solvation -98.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds