Wall clock time and date at job start Wed Apr 1 2020 01:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.46901 * 2 1 4 4 C 1.53002 * 109.47226 * 240.00419 * 2 1 3 5 5 N 1.46500 * 109.47390 * 184.99823 * 4 2 1 6 6 C 1.46503 * 119.99818 * 269.99570 * 5 4 2 7 7 C 1.34772 * 119.99833 * 89.99515 * 5 4 2 8 8 O 1.21279 * 120.00190 * 2.53734 * 7 5 4 9 9 C 1.50701 * 119.99753 * 182.53517 * 7 5 4 10 10 H 1.09000 * 110.43426 * 319.99027 * 9 7 5 11 11 C 1.54627 * 110.48697 * 197.45415 * 9 7 5 12 12 C 1.54477 * 101.76384 * 265.98684 * 11 9 7 13 13 N 1.46760 * 105.47621 * 334.58291 * 12 11 9 14 14 C 1.34429 * 111.29572 * 17.28308 * 13 12 11 15 15 O 1.21280 * 124.93755 * 179.31218 * 14 13 12 16 16 N 1.46499 * 109.47546 * 120.00167 * 2 1 3 17 17 C 1.34773 * 119.99561 * 275.00243 * 16 2 1 18 18 O 1.21284 * 120.00348 * 359.97438 * 17 16 2 19 19 C 1.50702 * 119.99636 * 180.02562 * 17 16 2 20 20 S 1.81005 * 109.47237 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00057 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00181 * 359.97438 * 21 20 19 23 23 C 1.38796 * 119.99730 * 180.02562 * 21 20 19 24 24 N 1.31624 * 120.00383 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47582 * 59.99306 * 25 23 21 27 27 H 1.48502 * 109.47423 * 179.97438 * 25 23 21 28 28 H 1.48507 * 109.46740 * 299.99547 * 25 23 21 29 29 H 1.09002 * 109.46842 * 299.99563 * 1 2 3 30 30 H 1.08998 * 109.47330 * 60.00326 * 1 2 3 31 31 H 1.09001 * 109.46901 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47124 * 64.99094 * 4 2 1 33 33 H 1.09003 * 109.47011 * 304.99698 * 4 2 1 34 34 H 1.08994 * 109.47108 * 264.34106 * 6 5 4 35 35 H 1.08996 * 109.46674 * 24.34405 * 6 5 4 36 36 H 1.08996 * 109.46744 * 144.33841 * 6 5 4 37 37 H 1.09006 * 110.97468 * 147.86687 * 11 9 7 38 38 H 1.09000 * 111.00585 * 24.11776 * 11 9 7 39 39 H 1.09005 * 110.24997 * 215.58224 * 12 11 9 40 40 H 1.08999 * 110.25039 * 93.58528 * 12 11 9 41 41 H 0.96999 * 124.35556 * 197.01694 * 13 12 11 42 42 H 0.96997 * 120.00320 * 94.99793 * 16 2 1 43 43 H 1.09000 * 109.47014 * 299.99602 * 19 17 16 44 44 H 1.08991 * 109.47576 * 59.99554 * 19 17 16 45 45 H 0.96999 * 120.00470 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.3343 0.2342 -1.7615 7 6 4.0758 -1.8985 -0.6117 8 8 3.3861 -2.7981 -0.1804 9 6 5.5765 -1.9797 -0.5004 10 1 6.0463 -1.6063 -1.4102 11 6 6.0204 -3.4341 -0.2198 12 6 6.1158 -3.4424 1.3220 13 7 6.3633 -2.0478 1.7065 14 6 6.0581 -1.2039 0.7057 15 8 6.1571 0.0036 0.7608 16 7 2.0184 -0.6906 1.1961 17 6 2.1471 -0.0182 2.3570 18 8 1.8590 1.1586 2.4114 19 6 2.6501 -0.7285 3.5873 20 16 2.7101 0.4343 4.9732 21 6 3.3135 -0.6309 6.2404 22 1 3.5230 -1.6673 6.0204 23 6 3.5185 -0.1383 7.5217 24 7 3.2627 1.1246 7.7901 25 14 4.1588 -1.2674 8.8651 26 1 5.4861 -1.8036 8.4702 27 1 4.2908 -0.5041 10.1321 28 1 3.2090 -2.3921 9.0608 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2953 34 1 4.6257 -0.0389 -2.7756 35 1 3.7710 1.1670 -1.7839 36 1 5.2268 0.3634 -1.1493 37 1 6.9908 -3.6399 -0.6718 38 1 5.2714 -4.1453 -0.5680 39 1 6.9424 -4.0751 1.6455 40 1 5.1794 -3.7928 1.7561 41 1 6.6999 -1.7704 2.5729 42 1 2.2491 -1.6317 1.1526 43 1 1.9779 -1.5508 3.8324 44 1 3.6494 -1.1203 3.3977 45 1 3.4056 1.4688 8.6856 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756480426.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:00 Heat of formation + Delta-G solvation = -133.849531 kcal Electronic energy + Delta-G solvation = -29409.106396 eV Core-core repulsion = 25358.689279 eV Total energy + Delta-G solvation = -4050.417117 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23324 -40.90959 -39.94989 -37.82449 -37.06147 -35.79958 -34.62175 -33.01528 -32.39634 -30.16206 -29.17941 -28.31068 -27.69851 -26.79371 -23.65542 -22.74159 -22.27978 -21.51692 -20.14453 -19.84275 -18.78844 -18.45946 -17.95934 -17.65274 -17.37841 -16.91518 -16.64293 -16.47363 -16.10894 -15.77544 -15.71380 -14.86727 -14.83756 -14.74263 -14.65112 -14.48717 -14.23407 -14.01063 -13.94144 -13.65454 -13.38587 -13.36196 -13.21165 -13.02174 -12.89499 -12.80160 -12.62636 -12.37145 -12.31449 -12.15400 -11.78599 -11.19376 -11.16153 -11.03452 -10.94209 -10.35201 -10.22330 -10.13201 -9.70919 -8.72024 -8.37295 -6.16821 1.04492 1.21377 1.41343 1.42443 1.50905 1.53007 1.56366 1.93614 2.23690 2.28190 2.38933 2.96462 3.25146 3.27959 3.33650 3.47078 3.71486 3.91974 3.98268 4.05562 4.12810 4.16558 4.19154 4.32936 4.34983 4.44424 4.48562 4.60931 4.69251 4.73476 4.76682 4.95292 4.97593 5.00590 5.10606 5.19814 5.36739 5.36967 5.53721 5.70703 5.92333 6.15959 6.18209 6.41735 6.92989 7.02805 7.07543 7.18125 8.72029 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011155 B = 0.004024 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.407926 B = 6956.768175 C = 8515.898651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.119 3.881 3 H 0.066 0.934 4 C 0.112 3.888 5 N -0.606 5.606 6 C 0.061 3.939 7 C 0.529 3.471 8 O -0.552 6.552 9 C -0.147 4.147 10 H 0.152 0.848 11 C -0.104 4.104 12 C 0.092 3.908 13 N -0.725 5.725 14 C 0.517 3.483 15 O -0.563 6.563 16 N -0.710 5.710 17 C 0.532 3.468 18 O -0.562 6.562 19 C -0.124 4.124 20 S -0.140 6.140 21 C -0.548 4.548 22 H 0.080 0.920 23 C 0.016 3.984 24 N -0.911 5.911 25 Si 1.000 3.000 26 H -0.260 1.260 27 H -0.277 1.277 28 H -0.262 1.262 29 H 0.032 0.968 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.121 0.879 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.068 0.932 41 H 0.414 0.586 42 H 0.408 0.592 43 H 0.100 0.900 44 H 0.089 0.911 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.878 -13.224 -25.576 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.011 4.011 5 N -0.337 5.337 6 C -0.081 4.081 7 C 0.317 3.683 8 O -0.431 6.431 9 C -0.171 4.171 10 H 0.170 0.830 11 C -0.142 4.142 12 C -0.031 4.031 13 N -0.378 5.378 14 C 0.302 3.698 15 O -0.442 6.442 16 N -0.366 5.366 17 C 0.317 3.683 18 O -0.440 6.440 19 C -0.275 4.275 20 S 0.087 5.913 21 C -0.696 4.696 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.547 5.547 25 Si 0.821 3.179 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.186 1.186 29 H 0.052 0.948 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.152 0.848 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.139 0.861 38 H 0.127 0.873 39 H 0.131 0.869 40 H 0.087 0.913 41 H 0.253 0.747 42 H 0.247 0.753 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.042 -11.036 -25.279 27.877 hybrid contribution 0.817 -1.456 1.636 2.337 sum 4.859 -12.491 -23.643 27.177 Atomic orbital electron populations 1.22066 0.93286 1.03077 1.02848 1.21633 0.95515 0.97063 0.84452 0.91595 1.22017 0.78835 1.03235 0.97021 1.47868 1.07438 1.21045 1.57302 1.22220 0.95936 0.90221 0.99764 1.20137 0.89613 0.81634 0.76943 1.90630 1.64638 1.39019 1.48849 1.22208 0.93928 1.00751 1.00233 0.83034 1.22662 1.04916 0.92208 0.94411 1.22394 1.03295 0.81148 0.96293 1.46404 1.65650 1.09251 1.16520 1.20761 0.76547 0.86373 0.86079 1.90778 1.55546 1.14758 1.83123 1.46126 1.67237 1.14581 1.08643 1.20026 0.76819 0.86657 0.84775 1.90657 1.50848 1.17313 1.85218 1.23284 1.04079 1.03251 0.96914 1.85537 1.86678 1.16969 1.02137 1.23127 1.51361 0.98301 0.96809 0.90224 1.26145 0.94913 0.97251 1.00625 1.70177 1.46642 1.15564 1.22355 0.84990 0.79129 0.77700 0.76080 1.18461 1.20167 1.18608 0.94830 0.88322 0.91057 0.84806 0.88330 0.88762 0.90158 0.91269 0.86088 0.87307 0.86864 0.91332 0.74729 0.75277 0.88148 0.89277 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.48 71.98 0.68 -2.66 16 2 C 0.12 2.96 2.88 44.99 0.13 3.09 16 3 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 4 C 0.11 1.80 5.12 86.38 0.44 2.25 16 5 N -0.61 -11.05 2.77 -846.77 -2.35 -13.40 16 6 C 0.06 0.91 9.82 127.77 1.25 2.17 16 7 C 0.53 10.86 6.11 87.66 0.54 11.40 16 8 O -0.55 -13.13 13.20 -3.03 -0.04 -13.17 16 9 C -0.15 -2.48 2.38 -11.55 -0.03 -2.51 16 10 H 0.15 1.72 7.25 -2.39 -0.02 1.70 16 11 C -0.10 -1.13 6.39 31.65 0.20 -0.93 16 12 C 0.09 1.34 7.75 86.83 0.67 2.02 16 13 N -0.72 -16.17 6.24 -459.81 -2.87 -19.04 16 14 C 0.52 13.44 7.61 87.89 0.67 14.11 16 15 O -0.56 -19.92 16.06 -3.03 -0.05 -19.97 16 16 N -0.71 -22.80 4.48 -442.53 -1.98 -24.78 16 17 C 0.53 22.98 7.81 87.66 0.68 23.67 16 18 O -0.56 -28.77 15.52 -3.04 -0.05 -28.81 16 19 C -0.12 -5.71 6.16 71.24 0.44 -5.27 16 20 S -0.14 -8.32 20.57 -56.49 -1.16 -9.49 16 21 C -0.55 -32.63 9.50 67.95 0.65 -31.99 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.02 0.91 5.49 84.86 0.47 1.37 16 24 N -0.91 -57.45 13.22 21.65 0.29 -57.16 16 25 Si 1.00 44.45 29.55 68.60 2.03 46.48 16 26 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 27 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 29 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.13 1.16 8.07 -2.39 -0.02 1.14 16 33 H 0.10 1.55 7.39 -2.39 -0.02 1.53 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 1.17 8.03 -2.39 -0.02 1.15 16 36 H 0.07 1.43 4.78 -2.39 -0.01 1.42 16 37 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.11 1.16 7.29 -2.39 -0.02 1.14 16 39 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.41 9.82 8.96 -92.71 -0.83 8.99 16 42 H 0.41 12.35 5.93 -92.71 -0.55 11.80 16 43 H 0.10 4.28 8.14 -2.40 -0.02 4.26 16 44 H 0.09 3.93 8.14 -2.40 -0.02 3.91 16 45 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -88.90 384.12 0.26 -88.64 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: -0.35 Total: 33.99 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 6.80 Total: 16.73 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -6.91 Total: -114.39 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -0.14 Total: -61.96 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -8.32 SS G_CDS: -1.16 Total: -9.49 kcal Total: -88.90 0.26 -88.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756480426.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.213 kcal (2) G-P(sol) polarization free energy of solvation -88.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds