Wall clock time and date at job start Wed Apr 1 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47621 * 2 1 4 4 C 1.52997 * 109.47105 * 119.99813 * 2 1 3 5 5 N 1.46501 * 109.47400 * 174.99568 * 4 2 1 6 6 C 1.46502 * 120.00275 * 270.00232 * 5 4 2 7 7 C 1.34778 * 119.99929 * 89.99774 * 5 4 2 8 8 O 1.21288 * 119.99892 * 2.19036 * 7 5 4 9 9 C 1.50699 * 120.00089 * 182.19001 * 7 5 4 10 10 H 1.08999 * 110.43370 * 319.83748 * 9 7 5 11 11 C 1.54630 * 110.48675 * 197.29756 * 9 7 5 12 12 C 1.54478 * 101.76522 * 266.12067 * 11 9 7 13 13 N 1.46764 * 105.47327 * 334.58484 * 12 11 9 14 14 C 1.34415 * 111.30065 * 17.28246 * 13 12 11 15 15 O 1.21280 * 124.94611 * 179.30895 * 14 13 12 16 16 N 1.46494 * 109.46985 * 239.99651 * 2 1 3 17 17 C 1.34775 * 120.00017 * 85.00133 * 16 2 1 18 18 O 1.21280 * 120.00278 * 0.02562 * 17 16 2 19 19 C 1.50704 * 120.00013 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00037 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00057 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00279 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99758 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00192 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47280 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47252 * 120.00239 * 25 23 21 28 28 H 1.48504 * 109.47040 * 240.00068 * 25 23 21 29 29 H 1.09010 * 109.47140 * 300.00422 * 1 2 3 30 30 H 1.09004 * 109.47093 * 59.99890 * 1 2 3 31 31 H 1.09004 * 109.47669 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47323 * 54.99586 * 4 2 1 33 33 H 1.09001 * 109.47423 * 294.99970 * 4 2 1 34 34 H 1.08996 * 109.46709 * 264.78494 * 6 5 4 35 35 H 1.08997 * 109.46551 * 24.78362 * 6 5 4 36 36 H 1.08995 * 109.46694 * 144.78608 * 6 5 4 37 37 H 1.08994 * 110.97088 * 148.00326 * 11 9 7 38 38 H 1.09009 * 110.99973 * 24.25102 * 11 9 7 39 39 H 1.09004 * 110.24963 * 215.58347 * 12 11 9 40 40 H 1.09005 * 110.24796 * 93.58347 * 12 11 9 41 41 H 0.97000 * 124.35242 * 197.01418 * 13 12 11 42 42 H 0.97001 * 120.00331 * 264.99868 * 16 2 1 43 43 H 1.09001 * 109.47045 * 299.99718 * 19 17 16 44 44 H 1.08998 * 109.47309 * 59.99803 * 19 17 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2676 0.1491 1.7155 8 8 3.7502 1.0948 2.2716 9 6 5.7686 0.0650 1.6116 10 1 6.1047 -0.9588 1.7758 11 6 6.4358 1.0229 2.6257 12 6 6.6542 2.2883 1.7671 13 7 6.7306 1.8125 0.3808 14 6 6.2297 0.5709 0.2624 15 8 6.1600 -0.0542 -0.7746 16 7 2.0182 -0.6907 -1.1961 17 6 2.1470 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4116 19 6 2.6487 -0.7290 -3.5877 20 16 2.7105 0.4342 -4.9731 21 6 3.3135 -0.6312 -6.2404 22 1 3.5227 -1.6676 -6.0204 23 6 3.5196 -0.1384 -7.5215 24 7 3.2651 1.1249 -7.7895 25 14 4.1582 -1.2680 -8.8652 26 1 4.3643 -2.6300 -8.3105 27 1 3.1704 -1.3281 -9.9723 28 1 5.4484 -0.7437 -9.3809 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 4.3665 -2.7316 1.3249 35 1 3.4367 -2.4278 -0.1622 36 1 5.0393 -1.6838 0.0531 37 1 7.3863 0.6201 2.9755 38 1 5.7701 1.2301 3.4636 39 1 7.5854 2.7796 2.0492 40 1 5.8147 2.9736 1.8849 41 1 7.0924 2.3293 -0.3561 42 1 2.2489 -1.6318 -1.1525 43 1 3.6479 -1.1216 -3.3986 44 1 1.9758 -1.5508 -3.8325 45 1 3.4095 1.4695 -8.6847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756480428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:06 Heat of formation + Delta-G solvation = -99.629054 kcal Electronic energy + Delta-G solvation = -28802.440575 eV Core-core repulsion = 24753.507369 eV Total energy + Delta-G solvation = -4048.933206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.35193 -39.65716 -38.81490 -36.88978 -36.14488 -34.52029 -32.37086 -32.05101 -31.36204 -28.66919 -28.36747 -27.51178 -26.01305 -25.42238 -22.80818 -21.84633 -21.28703 -20.25531 -19.29378 -17.97570 -17.79868 -17.60032 -16.58014 -16.41234 -16.30290 -15.57433 -15.34855 -14.88639 -14.75387 -14.69509 -14.07269 -13.96410 -13.89806 -13.73575 -13.33383 -13.21327 -13.13993 -13.04796 -12.89321 -12.54457 -12.48091 -12.18173 -11.97384 -11.79619 -11.74630 -11.70427 -11.12531 -11.02623 -10.95574 -10.70729 -10.26552 -10.02489 -9.74692 -9.31779 -9.29873 -9.06100 -9.01010 -8.70752 -8.15322 -6.41912 -6.15988 -3.85124 1.97039 2.41802 2.72313 3.11421 3.16008 3.21849 3.25303 3.31874 3.37373 3.78936 3.97461 4.00606 4.13204 4.26014 4.55226 4.61225 4.72572 4.83442 4.92814 5.05899 5.15657 5.19050 5.20939 5.22561 5.26638 5.39166 5.44003 5.47015 5.56512 5.62320 5.66185 5.75410 5.98743 6.04549 6.08831 6.23765 6.29727 6.50297 6.72240 6.77150 6.99515 7.65637 7.78176 7.79089 7.98541 8.41435 8.72625 9.29443 10.91622 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003260 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.235439 B = 8586.837479 C = 9834.254729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.090 0.910 4 C 0.108 3.892 5 N -0.604 5.604 6 C 0.063 3.937 7 C 0.535 3.465 8 O -0.528 6.528 9 C -0.152 4.152 10 H 0.127 0.873 11 C -0.116 4.116 12 C 0.100 3.900 13 N -0.725 5.725 14 C 0.529 3.471 15 O -0.506 6.506 16 N -0.732 5.732 17 C 0.536 3.464 18 O -0.518 6.518 19 C -0.152 4.152 20 S -0.060 6.060 21 C -0.532 4.532 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.417 0.583 42 H 0.392 0.608 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.689 -5.838 26.047 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.108 0.892 4 C -0.015 4.015 5 N -0.336 5.336 6 C -0.080 4.080 7 C 0.321 3.679 8 O -0.404 6.404 9 C -0.177 4.177 10 H 0.145 0.855 11 C -0.154 4.154 12 C -0.024 4.024 13 N -0.381 5.381 14 C 0.313 3.687 15 O -0.381 6.381 16 N -0.387 5.387 17 C 0.322 3.678 18 O -0.392 6.392 19 C -0.302 4.302 20 S 0.167 5.833 21 C -0.680 4.680 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.504 5.504 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.257 0.743 42 H 0.227 0.773 43 H 0.108 0.892 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.841 -3.630 25.660 26.198 hybrid contribution 1.037 -2.400 -1.178 2.867 sum 4.877 -6.030 24.481 25.680 Atomic orbital electron populations 1.22121 0.94661 1.02093 1.03052 1.21287 0.94238 0.98348 0.84052 0.89218 1.21896 0.78987 1.01855 0.98749 1.47671 1.06474 1.21685 1.57779 1.22172 1.00688 0.87314 0.97790 1.19778 0.87801 0.82122 0.78180 1.90707 1.74400 1.32014 1.43313 1.22169 0.94498 1.03976 0.97034 0.85477 1.22572 1.01538 0.93638 0.97634 1.22125 1.02877 0.97056 0.80385 1.46123 1.63423 1.16967 1.11595 1.20134 0.77230 0.82204 0.89156 1.90837 1.55049 1.60274 1.31899 1.46123 1.69543 1.13550 1.09510 1.20270 0.76576 0.87212 0.83749 1.90688 1.48327 1.15738 1.84428 1.23515 1.03646 1.04704 0.98384 1.85362 1.86166 1.13128 0.98693 1.22914 1.50681 0.98140 0.96301 0.90944 1.24982 0.95171 0.95521 0.97940 1.70035 1.45832 1.13209 1.21339 0.86126 0.78496 0.80192 0.80735 1.19617 1.20610 1.20602 0.91700 0.91278 0.92450 0.89688 0.88247 0.92285 0.90807 0.88812 0.89196 0.87881 0.89866 0.90178 0.74311 0.77290 0.89183 0.89484 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 9.48 37.15 0.35 -1.47 16 2 C 0.13 1.64 2.88 -67.94 -0.20 1.44 16 3 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 4 C 0.11 1.02 5.04 -4.04 -0.02 1.00 16 5 N -0.60 -6.15 2.73 -181.57 -0.50 -6.65 16 6 C 0.06 0.53 9.37 59.85 0.56 1.09 16 7 C 0.53 6.18 6.88 -10.99 -0.08 6.11 16 8 O -0.53 -7.33 15.30 5.55 0.08 -7.25 16 9 C -0.15 -1.41 2.38 -91.78 -0.22 -1.63 16 10 H 0.13 0.87 7.26 -51.93 -0.38 0.49 16 11 C -0.12 -0.76 6.39 -25.10 -0.16 -0.92 16 12 C 0.10 0.74 7.74 -3.12 -0.02 0.71 16 13 N -0.72 -7.55 6.24 -59.20 -0.37 -7.92 16 14 C 0.53 6.74 7.60 -10.86 -0.08 6.66 16 15 O -0.51 -8.52 16.03 5.56 0.09 -8.43 16 16 N -0.73 -10.51 4.52 -53.81 -0.24 -10.75 16 17 C 0.54 10.76 7.81 -10.98 -0.09 10.67 16 18 O -0.52 -12.54 15.52 5.56 0.09 -12.45 16 19 C -0.15 -3.29 6.16 36.01 0.22 -3.06 16 20 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 21 C -0.53 -15.70 9.50 30.94 0.29 -15.41 16 22 H 0.07 2.03 7.80 -52.48 -0.41 1.63 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.88 13.22 55.49 0.73 -26.14 16 25 Si 0.92 22.00 29.55 -169.99 -5.02 16.97 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 29 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.10 0.95 7.39 -51.93 -0.38 0.56 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.56 5.76 -51.93 -0.30 0.26 16 36 H 0.09 0.98 4.73 -51.93 -0.25 0.74 16 37 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.10 0.69 7.29 -51.92 -0.38 0.31 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.42 4.11 8.96 -40.82 -0.37 3.74 16 42 H 0.39 4.48 6.21 -40.82 -0.25 4.23 16 43 H 0.09 1.88 8.14 -51.91 -0.42 1.46 16 44 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 384.39 15.07 5.79 5.79 Total: -1.00 -40.00 384.39 -7.55 -47.55 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.46 Total: 5.96 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 0.47 Total: 7.23 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.37 Total: -51.46 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: 0.26 Total: -28.13 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.00 -7.55 -47.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756480428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.080 kcal (2) G-P(sol) polarization free energy of solvation -39.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds