Wall clock time and date at job start Wed Apr 1 2020 01:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47621 * 2 1 4 4 C 1.52997 * 109.47105 * 119.99813 * 2 1 3 5 5 N 1.46501 * 109.47400 * 174.99568 * 4 2 1 6 6 C 1.46502 * 120.00275 * 270.00232 * 5 4 2 7 7 C 1.34778 * 119.99929 * 89.99774 * 5 4 2 8 8 O 1.21288 * 119.99892 * 2.19036 * 7 5 4 9 9 C 1.50699 * 120.00089 * 182.19001 * 7 5 4 10 10 H 1.08999 * 110.43370 * 319.83748 * 9 7 5 11 11 C 1.54630 * 110.48675 * 197.29756 * 9 7 5 12 12 C 1.54478 * 101.76522 * 266.12067 * 11 9 7 13 13 N 1.46764 * 105.47327 * 334.58484 * 12 11 9 14 14 C 1.34415 * 111.30065 * 17.28246 * 13 12 11 15 15 O 1.21280 * 124.94611 * 179.30895 * 14 13 12 16 16 N 1.46494 * 109.46985 * 239.99651 * 2 1 3 17 17 C 1.34775 * 120.00017 * 85.00133 * 16 2 1 18 18 O 1.21280 * 120.00278 * 0.02562 * 17 16 2 19 19 C 1.50704 * 120.00013 * 180.02562 * 17 16 2 20 20 S 1.81002 * 109.47115 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00037 * 179.97438 * 20 19 17 22 22 H 1.08003 * 120.00057 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00279 * 179.97438 * 21 20 19 24 24 N 1.31632 * 119.99758 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00192 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47280 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47252 * 120.00239 * 25 23 21 28 28 H 1.48504 * 109.47040 * 240.00068 * 25 23 21 29 29 H 1.09010 * 109.47140 * 300.00422 * 1 2 3 30 30 H 1.09004 * 109.47093 * 59.99890 * 1 2 3 31 31 H 1.09004 * 109.47669 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47323 * 54.99586 * 4 2 1 33 33 H 1.09001 * 109.47423 * 294.99970 * 4 2 1 34 34 H 1.08996 * 109.46709 * 264.78494 * 6 5 4 35 35 H 1.08997 * 109.46551 * 24.78362 * 6 5 4 36 36 H 1.08995 * 109.46694 * 144.78608 * 6 5 4 37 37 H 1.08994 * 110.97088 * 148.00326 * 11 9 7 38 38 H 1.09009 * 110.99973 * 24.25102 * 11 9 7 39 39 H 1.09004 * 110.24963 * 215.58347 * 12 11 9 40 40 H 1.09005 * 110.24796 * 93.58347 * 12 11 9 41 41 H 0.97000 * 124.35242 * 197.01418 * 13 12 11 42 42 H 0.97001 * 120.00331 * 264.99868 * 16 2 1 43 43 H 1.09001 * 109.47045 * 299.99718 * 19 17 16 44 44 H 1.08998 * 109.47309 * 59.99803 * 19 17 16 45 45 H 0.96998 * 120.00273 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5000 -0.8265 1.1906 6 6 4.1257 -1.9921 0.5613 7 6 4.2676 0.1491 1.7155 8 8 3.7502 1.0948 2.2716 9 6 5.7686 0.0650 1.6116 10 1 6.1047 -0.9588 1.7758 11 6 6.4358 1.0229 2.6257 12 6 6.6542 2.2883 1.7671 13 7 6.7306 1.8125 0.3808 14 6 6.2297 0.5709 0.2624 15 8 6.1600 -0.0542 -0.7746 16 7 2.0182 -0.6907 -1.1961 17 6 2.1470 -0.0184 -2.3571 18 8 1.8590 1.1585 -2.4116 19 6 2.6487 -0.7290 -3.5877 20 16 2.7105 0.4342 -4.9731 21 6 3.3135 -0.6312 -6.2404 22 1 3.5227 -1.6676 -6.0204 23 6 3.5196 -0.1384 -7.5215 24 7 3.2651 1.1249 -7.7895 25 14 4.1582 -1.2680 -8.8652 26 1 4.3643 -2.6300 -8.3105 27 1 3.1704 -1.3281 -9.9723 28 1 5.4484 -0.7437 -9.3809 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -1.7197 1.2953 33 1 1.7516 -0.1583 2.1370 34 1 4.3665 -2.7316 1.3249 35 1 3.4367 -2.4278 -0.1622 36 1 5.0393 -1.6838 0.0531 37 1 7.3863 0.6201 2.9755 38 1 5.7701 1.2301 3.4636 39 1 7.5854 2.7796 2.0492 40 1 5.8147 2.9736 1.8849 41 1 7.0924 2.3293 -0.3561 42 1 2.2489 -1.6318 -1.1525 43 1 3.6479 -1.1216 -3.3986 44 1 1.9758 -1.5508 -3.8325 45 1 3.4095 1.4695 -8.6847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756480428.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:06 Heat of formation + Delta-G solvation = -132.220557 kcal Electronic energy + Delta-G solvation = -28803.853849 eV Core-core repulsion = 24753.507369 eV Total energy + Delta-G solvation = -4050.346480 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19860 -40.92530 -39.96861 -37.90814 -37.16718 -35.60489 -34.60705 -33.14373 -32.39568 -30.16279 -29.19856 -28.27277 -27.68792 -26.82004 -23.66392 -22.74766 -22.25579 -21.68580 -20.16420 -19.83549 -18.80091 -18.48404 -17.97167 -17.52108 -17.39661 -16.90588 -16.60913 -16.44220 -16.14452 -15.90627 -15.69991 -14.92951 -14.81448 -14.76716 -14.61044 -14.50081 -14.20717 -14.00353 -13.95308 -13.64780 -13.51306 -13.21263 -13.15843 -12.99310 -12.92716 -12.90029 -12.58999 -12.40669 -12.34869 -12.12122 -11.73323 -11.19876 -11.17648 -10.98528 -10.97626 -10.31108 -10.26201 -10.15635 -9.68875 -8.69426 -8.36635 -6.15123 1.05558 1.24075 1.39764 1.44013 1.53584 1.56886 1.59193 1.93750 2.23753 2.26804 2.37363 2.97392 3.24121 3.29114 3.32431 3.45199 3.67812 3.94257 3.96004 4.03940 4.15227 4.18355 4.24840 4.31275 4.43839 4.45259 4.50976 4.59417 4.68462 4.69762 4.75568 4.94754 4.96396 4.98215 5.08224 5.19813 5.39422 5.42234 5.47567 5.69371 5.90134 6.17777 6.17947 6.44712 6.94654 7.04227 7.06885 7.21996 8.73219 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.003260 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.235439 B = 8586.837479 C = 9834.254729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.042 0.958 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.058 3.942 7 C 0.524 3.476 8 O -0.559 6.559 9 C -0.146 4.146 10 H 0.155 0.845 11 C -0.106 4.106 12 C 0.094 3.906 13 N -0.726 5.726 14 C 0.516 3.484 15 O -0.559 6.559 16 N -0.703 5.703 17 C 0.535 3.465 18 O -0.568 6.568 19 C -0.126 4.126 20 S -0.152 6.152 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.256 1.256 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.124 0.876 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.416 0.584 42 H 0.411 0.589 43 H 0.099 0.901 44 H 0.112 0.888 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -9.049 27.989 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.061 0.939 4 C -0.009 4.009 5 N -0.337 5.337 6 C -0.084 4.084 7 C 0.312 3.688 8 O -0.438 6.438 9 C -0.170 4.170 10 H 0.172 0.828 11 C -0.144 4.144 12 C -0.029 4.029 13 N -0.380 5.380 14 C 0.300 3.700 15 O -0.438 6.438 16 N -0.359 5.359 17 C 0.321 3.679 18 O -0.447 6.447 19 C -0.277 4.277 20 S 0.075 5.925 21 C -0.693 4.693 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.549 5.549 25 Si 0.822 3.178 26 H -0.180 1.180 27 H -0.196 1.196 28 H -0.199 1.199 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.136 0.864 40 H 0.082 0.918 41 H 0.255 0.745 42 H 0.250 0.750 43 H 0.117 0.883 44 H 0.130 0.870 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.541 -6.879 27.674 28.875 hybrid contribution 0.802 -1.356 -1.662 2.290 sum 5.343 -8.236 26.012 27.803 Atomic orbital electron populations 1.22059 0.93055 1.03789 1.02304 1.21419 0.95475 0.96360 0.84644 0.93919 1.21955 0.78836 1.03684 0.96399 1.47841 1.06780 1.21941 1.57112 1.22326 0.99872 0.87171 0.99008 1.20234 0.88859 0.81888 0.77864 1.90690 1.75138 1.33115 1.44826 1.22216 0.93141 1.06141 0.95517 0.82752 1.22666 1.02865 0.92272 0.96609 1.22365 1.04030 0.97620 0.78880 1.46359 1.62179 1.16449 1.13005 1.20784 0.76783 0.82563 0.89830 1.90795 1.57267 1.61722 1.33974 1.45856 1.67577 1.14201 1.08224 1.20061 0.76458 0.86574 0.84801 1.90675 1.50871 1.17846 1.85261 1.23332 1.04944 1.03244 0.96213 1.85560 1.86601 1.17628 1.02715 1.23225 1.51017 0.98340 0.96724 0.90040 1.26159 0.94988 0.97280 1.00743 1.70199 1.46905 1.15536 1.22240 0.84879 0.77870 0.78165 0.76860 1.17980 1.19614 1.19913 0.89651 0.94880 0.89420 0.85392 0.87897 0.88583 0.89933 0.90944 0.85816 0.87740 0.86443 0.91790 0.74548 0.75046 0.88256 0.87017 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.29 9.48 71.98 0.68 -2.60 16 2 C 0.13 3.18 2.88 44.99 0.13 3.31 16 3 H 0.04 1.51 7.58 -2.39 -0.02 1.49 16 4 C 0.11 1.87 5.04 86.38 0.44 2.30 16 5 N -0.61 -11.12 2.73 -846.76 -2.31 -13.43 16 6 C 0.06 0.81 9.37 127.77 1.20 2.01 16 7 C 0.52 11.59 6.88 87.66 0.60 12.19 16 8 O -0.56 -15.41 15.30 -3.06 -0.05 -15.46 16 9 C -0.15 -2.50 2.38 -11.54 -0.03 -2.53 16 10 H 0.15 1.71 7.26 -2.39 -0.02 1.70 16 11 C -0.11 -1.16 6.39 31.65 0.20 -0.96 16 12 C 0.09 1.30 7.74 86.83 0.67 1.97 16 13 N -0.73 -15.32 6.24 -459.80 -2.87 -18.19 16 14 C 0.52 13.26 7.60 87.90 0.67 13.92 16 15 O -0.56 -19.48 16.03 -3.03 -0.05 -19.53 16 16 N -0.70 -19.60 4.52 -442.56 -2.00 -21.60 16 17 C 0.54 21.95 7.81 87.66 0.68 22.64 16 18 O -0.57 -29.06 15.52 -3.03 -0.05 -29.11 16 19 C -0.13 -5.50 6.16 71.24 0.44 -5.06 16 20 S -0.15 -9.00 20.57 -56.49 -1.16 -10.16 16 21 C -0.55 -32.61 9.50 67.95 0.65 -31.97 16 22 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -57.88 13.22 21.65 0.29 -57.59 16 25 Si 1.00 45.05 29.55 68.60 2.03 47.08 16 26 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 27 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 28 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 29 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 32 H 0.13 1.06 8.07 -2.39 -0.02 1.04 16 33 H 0.10 1.72 7.39 -2.39 -0.02 1.70 16 34 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.08 0.97 5.76 -2.39 -0.01 0.95 16 36 H 0.07 1.42 4.73 -2.39 -0.01 1.40 16 37 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.10 1.19 7.29 -2.38 -0.02 1.17 16 39 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.42 8.62 8.96 -92.71 -0.83 7.79 16 42 H 0.41 8.36 6.21 -92.71 -0.58 7.79 16 43 H 0.10 4.15 8.14 -2.40 -0.02 4.13 16 44 H 0.11 4.29 8.14 -2.40 -0.02 4.28 16 45 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -94.25 384.39 0.26 -93.99 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.37 Total: 27.54 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 6.80 Total: 16.45 kcal Atomic # 7 Polarization: -103.91 SS G_CDS: -6.89 Total: -110.81 kcal Atomic # 8 Polarization: -63.95 SS G_CDS: -0.14 Total: -64.09 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: -9.00 SS G_CDS: -1.16 Total: -10.16 kcal Total: -94.25 0.26 -93.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756480428.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.228 kcal (2) G-P(sol) polarization free energy of solvation -94.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds