Wall clock time and date at job start Wed Apr 1 2020 02:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21280 * 119.99866 * 2 1 4 4 N 1.34773 * 120.00224 * 180.02562 * 2 1 3 5 5 C 1.46501 * 120.00387 * 179.97438 * 4 2 1 6 6 C 1.50691 * 109.47293 * 179.97438 * 5 4 2 7 7 O 1.21277 * 120.00539 * 359.97438 * 6 5 4 8 8 N 1.34788 * 119.99979 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99558 * 0.02562 * 8 6 5 10 10 C 1.46498 * 119.99995 * 179.97438 * 8 6 5 11 11 C 1.53005 * 109.46946 * 95.55217 * 10 8 6 12 12 H 1.09002 * 112.96208 * 67.00540 * 11 10 8 13 13 C 1.53940 * 113.76950 * 295.32838 * 11 10 8 14 14 C 1.53942 * 86.29117 * 222.08921 * 13 11 10 15 15 N 1.47577 * 113.77085 * 198.83156 * 11 10 8 16 16 C 1.34775 * 134.49246 * 318.94303 * 15 11 10 17 17 O 1.21281 * 119.99981 * 355.01416 * 16 15 11 18 18 C 1.50699 * 119.99945 * 175.00613 * 16 15 11 19 19 S 1.80999 * 109.47140 * 180.02562 * 18 16 15 20 20 C 1.76201 * 100.00077 * 180.02562 * 19 18 16 21 21 H 1.07998 * 119.99872 * 359.97438 * 20 19 18 22 22 C 1.38802 * 119.99935 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99838 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 119.99739 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47509 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46994 * 119.99958 * 24 22 20 27 27 H 1.48507 * 109.47140 * 239.99520 * 24 22 20 28 28 H 1.09005 * 109.46575 * 239.99461 * 1 2 3 29 29 H 1.09000 * 109.47176 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47657 * 119.99738 * 1 2 3 31 31 H 0.96998 * 120.00174 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47369 * 59.99119 * 5 4 2 33 33 H 1.09005 * 109.46699 * 299.99496 * 5 4 2 34 34 H 1.08995 * 109.47022 * 274.53623 * 9 8 6 35 35 H 1.08996 * 109.47330 * 34.54080 * 9 8 6 36 36 H 1.09007 * 109.46570 * 154.53915 * 9 8 6 37 37 H 1.09003 * 109.47206 * 215.54989 * 10 8 6 38 38 H 1.09004 * 109.47400 * 335.55524 * 10 8 6 39 39 H 1.09003 * 113.74375 * 336.43857 * 13 11 10 40 40 H 1.08999 * 113.74390 * 107.63737 * 13 11 10 41 41 H 1.09004 * 113.76955 * 137.90524 * 14 13 11 42 42 H 1.08995 * 113.77275 * 269.30822 * 14 13 11 43 43 H 1.08995 * 109.47687 * 299.99967 * 18 16 15 44 44 H 1.09005 * 109.46888 * 60.00753 * 18 16 15 45 45 H 0.97002 * 120.00019 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.6459 -1.1672 -0.0011 6 6 4.1482 -2.5879 -0.0010 7 8 3.3602 -3.5098 0.0000 8 7 5.4734 -2.8342 -0.0019 9 6 6.4253 -1.7206 -0.0026 10 6 5.9617 -4.2154 -0.0013 11 6 6.2620 -4.6508 -1.4370 12 1 7.1011 -4.1126 -1.8779 13 6 5.0175 -4.7080 -2.3412 14 6 5.5995 -6.0234 -2.8896 15 7 6.3329 -6.1145 -1.6122 16 6 6.8569 -7.1274 -0.8940 17 8 7.5010 -6.8919 0.1063 18 6 6.6424 -8.5528 -1.3339 19 16 7.4623 -9.6726 -0.1720 20 6 7.0616 -11.2231 -0.9070 21 1 6.4708 -11.2557 -1.8105 22 6 7.5045 -12.4024 -0.3243 23 7 8.2242 -12.3625 0.7772 24 14 7.0791 -14.0461 -1.1031 25 1 6.2661 -13.8194 -2.3248 26 1 8.3296 -14.7604 -1.4656 27 1 6.3032 -14.8653 -0.1376 28 1 -0.3633 -0.5140 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 1.6959 -2.0072 -0.0005 32 1 4.0096 -0.6534 0.8888 33 1 4.0088 -0.6532 -0.8912 34 1 6.5988 -1.3916 -1.0271 35 1 6.0184 -0.8944 0.5804 36 1 7.3670 -2.0475 0.4386 37 1 6.8717 -4.2788 0.5955 38 1 5.2012 -4.8695 0.4252 39 1 4.0832 -4.8356 -1.7944 40 1 4.9727 -3.9054 -3.0774 41 1 4.8565 -6.8091 -3.0266 42 1 6.2446 -5.8901 -3.7580 43 1 5.5745 -8.7698 -1.3548 44 1 7.0613 -8.6924 -2.3305 45 1 8.5340 -13.1867 1.1842 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001757271943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:31:38 Heat of formation + Delta-G solvation = -94.032541 kcal Electronic energy + Delta-G solvation = -27197.384519 eV Core-core repulsion = 23148.693996 eV Total energy + Delta-G solvation = -4048.690523 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.80519 -41.01300 -40.13667 -38.74286 -36.73257 -35.53386 -34.61556 -32.37088 -31.53111 -30.28341 -29.43006 -28.12957 -27.68891 -27.11971 -24.44679 -22.99840 -21.63665 -20.60702 -20.25459 -19.50255 -18.53097 -18.04637 -17.94529 -17.45374 -17.06303 -16.93999 -16.88834 -16.78735 -16.22080 -16.02698 -15.68916 -15.47402 -14.82482 -14.61903 -14.45250 -14.12837 -14.10991 -13.91632 -13.81141 -13.65613 -13.32609 -13.30529 -13.17341 -13.14788 -12.94214 -12.92838 -12.82117 -12.61492 -12.43055 -11.79468 -11.74048 -11.18351 -11.11889 -11.06965 -10.80941 -10.32339 -10.25602 -10.01757 -9.61135 -8.70664 -8.37586 -6.16262 1.15133 1.36177 1.39619 1.40118 1.51734 1.54724 1.61159 1.62792 2.03020 2.24640 2.40722 2.96523 3.17745 3.29719 3.41921 3.64211 3.81109 3.93068 4.01438 4.03543 4.18292 4.22358 4.29236 4.35522 4.37303 4.41891 4.49259 4.56643 4.57859 4.65443 4.68375 4.73470 4.87761 4.93292 4.96612 5.08404 5.25569 5.26947 5.37274 5.38997 6.17156 6.19584 6.47356 6.57208 6.92642 7.03529 7.09599 7.17059 8.72017 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021969 B = 0.001934 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.199703 B =14473.615514 C =14883.489910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.593 6.593 4 N -0.719 5.719 5 C 0.106 3.894 6 C 0.510 3.490 7 O -0.564 6.564 8 N -0.600 5.600 9 C 0.064 3.936 10 C 0.121 3.879 11 C 0.120 3.880 12 H 0.116 0.884 13 C -0.130 4.130 14 C 0.101 3.899 15 N -0.645 5.645 16 C 0.552 3.448 17 O -0.564 6.564 18 C -0.120 4.120 19 S -0.148 6.148 20 C -0.547 4.547 21 H 0.081 0.919 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 1.001 2.999 25 H -0.257 1.257 26 H -0.272 1.272 27 H -0.273 1.273 28 H 0.106 0.894 29 H 0.093 0.907 30 H 0.110 0.890 31 H 0.417 0.583 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.679 26.695 -8.994 30.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.300 3.700 3 O -0.474 6.474 4 N -0.374 5.374 5 C -0.022 4.022 6 C 0.298 3.702 7 O -0.443 6.443 8 N -0.333 5.333 9 C -0.078 4.078 10 C -0.003 4.003 11 C 0.016 3.984 12 H 0.134 0.866 13 C -0.168 4.168 14 C -0.020 4.020 15 N -0.382 5.382 16 C 0.342 3.658 17 O -0.442 6.442 18 C -0.271 4.271 19 S 0.080 5.920 20 C -0.695 4.695 21 H 0.099 0.901 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.181 1.181 26 H -0.197 1.197 27 H -0.199 1.199 28 H 0.125 0.875 29 H 0.112 0.888 30 H 0.128 0.872 31 H 0.255 0.745 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.526 27.048 -7.276 30.289 hybrid contribution -0.554 -1.975 -0.949 2.260 sum -12.080 25.073 -8.225 29.021 Atomic orbital electron populations 1.21936 0.88184 1.06249 1.06344 1.21484 0.92217 0.82230 0.74067 1.90711 1.72002 1.32790 1.51929 1.45894 1.06145 1.10191 1.75160 1.21129 0.82494 0.92729 1.05804 1.20831 0.82305 0.91509 0.75523 1.90705 1.55521 1.46948 1.51130 1.47688 1.06017 1.07015 1.72557 1.22245 0.93086 0.88140 1.04300 1.21345 0.99789 0.82770 0.96379 1.23397 0.99101 0.79690 0.96167 0.86628 1.23506 0.96762 0.97861 0.98631 1.23490 0.94251 0.98018 0.86285 1.50218 1.57219 1.06245 1.24517 1.19748 0.77236 0.86010 0.82851 1.90667 1.40729 1.84943 1.27891 1.23269 1.05175 0.94315 1.04343 1.85519 1.70275 0.99797 1.36449 1.23223 1.39881 0.91985 1.14387 0.90075 1.26150 0.94129 1.03596 0.95287 1.70188 1.34939 1.29676 1.19900 0.84883 0.78374 0.76110 0.78436 1.18077 1.19713 1.19866 0.87521 0.88791 0.87194 0.74470 0.87650 0.86725 0.89601 0.89077 0.89920 0.90442 0.92213 0.89651 0.86978 0.89410 0.86856 0.88252 0.87760 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.32 71.23 0.74 -0.39 16 2 C 0.51 7.52 7.94 87.66 0.70 8.21 16 3 O -0.59 -13.63 17.09 -3.03 -0.05 -13.68 16 4 N -0.72 -9.43 5.53 -466.80 -2.58 -12.01 16 5 C 0.11 1.29 4.77 85.63 0.41 1.70 16 6 C 0.51 8.55 7.31 87.65 0.64 9.19 16 7 O -0.56 -13.37 13.58 -3.02 -0.04 -13.41 16 8 N -0.60 -9.14 2.79 -846.74 -2.36 -11.50 16 9 C 0.06 0.46 10.20 127.77 1.30 1.77 16 10 C 0.12 2.78 5.02 86.38 0.43 3.21 16 11 C 0.12 2.42 4.52 45.09 0.20 2.63 16 12 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 13 C -0.13 -2.04 7.24 31.25 0.23 -1.82 16 14 C 0.10 1.78 8.61 86.48 0.74 2.53 16 15 N -0.64 -17.79 3.49 -814.00 -2.84 -20.63 16 16 C 0.55 21.70 7.94 87.66 0.70 22.39 16 17 O -0.56 -26.75 16.15 -3.03 -0.05 -26.80 16 18 C -0.12 -5.06 5.91 71.24 0.42 -4.64 16 19 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 20 C -0.55 -31.85 9.50 67.96 0.65 -31.21 16 21 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.76 5.49 84.86 0.47 1.22 16 23 N -0.91 -56.46 13.22 21.65 0.29 -56.17 16 24 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 26 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H 0.11 0.39 8.14 -2.38 -0.02 0.37 16 29 H 0.09 0.67 8.12 -2.39 -0.02 0.65 16 30 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.42 5.14 7.44 -92.71 -0.69 4.45 16 32 H 0.11 1.18 7.41 -2.39 -0.02 1.16 16 33 H 0.12 1.09 8.11 -2.38 -0.02 1.07 16 34 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 35 H 0.09 0.39 6.63 -2.39 -0.02 0.37 16 36 H 0.08 0.63 7.90 -2.38 -0.02 0.61 16 37 H 0.08 1.98 7.95 -2.39 -0.02 1.96 16 38 H 0.06 1.82 7.26 -2.39 -0.02 1.80 16 39 H 0.08 1.76 6.55 -2.39 -0.02 1.75 16 40 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.10 4.00 8.14 -2.39 -0.02 3.98 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -88.17 394.82 1.17 -87.00 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.32 Total: 15.92 kcal Atomic # 6 Polarization: 7.17 SS G_CDS: 7.62 Total: 14.80 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -7.49 Total: -100.32 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.14 Total: -53.90 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -88.17 1.17 -87.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001757271943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.029 kcal (2) G-P(sol) polarization free energy of solvation -88.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds