Wall clock time and date at job start Wed Apr 1 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47205 * 2 1 4 4 C 1.53002 * 109.47116 * 119.99806 * 2 1 3 5 5 N 1.46497 * 109.47319 * 175.00080 * 4 2 1 6 6 C 1.34772 * 120.00356 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00104 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47017 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00044 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00031 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46726 * 90.00148 * 14 12 10 16 16 H 1.48506 * 109.47014 * 210.00033 * 14 12 10 17 17 H 1.48498 * 109.47083 * 330.00085 * 14 12 10 18 18 N 1.46502 * 109.47260 * 239.99722 * 2 1 3 19 19 C 1.34774 * 119.99515 * 85.00104 * 18 2 1 20 20 O 1.21282 * 120.00410 * 0.02562 * 19 18 2 21 21 C 1.50704 * 119.99610 * 179.97438 * 19 18 2 22 22 C 1.52998 * 110.88624 * 56.19255 * 21 19 18 23 23 C 1.54476 * 110.97160 * 292.37675 * 21 19 18 24 24 N 1.46755 * 105.47483 * 267.29802 * 23 21 19 25 25 C 1.34424 * 111.30504 * 342.98562 * 24 23 21 26 26 O 1.21276 * 124.94682 * 180.45440 * 25 24 23 27 27 C 1.51285 * 110.10841 * 0.40398 * 25 24 23 28 28 H 1.09006 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47402 * 299.99943 * 1 2 3 30 30 H 1.08991 * 109.47139 * 60.00125 * 1 2 3 31 31 H 1.09001 * 109.47069 * 295.00131 * 4 2 1 32 32 H 1.09005 * 109.47056 * 55.00216 * 4 2 1 33 33 H 0.97000 * 119.99855 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47153 * 299.99592 * 8 6 5 35 35 H 1.08998 * 109.47229 * 60.00201 * 8 6 5 36 36 H 0.96997 * 120.00074 * 179.97438 * 13 12 10 37 37 H 0.96992 * 120.00140 * 264.99675 * 18 2 1 38 38 H 1.08999 * 109.47523 * 183.81112 * 22 21 19 39 39 H 1.09001 * 109.46671 * 303.80793 * 22 21 19 40 40 H 1.08997 * 109.47249 * 63.80537 * 22 21 19 41 41 H 1.08999 * 110.24071 * 26.29741 * 23 21 19 42 42 H 1.09003 * 110.24382 * 148.29926 * 23 21 19 43 43 H 0.97008 * 124.35283 * 162.98250 * 24 23 21 44 44 H 1.09001 * 110.48858 * 257.57403 * 27 25 24 45 45 H 1.09000 * 110.47996 * 134.93514 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6749 -1.5367 2.1307 9 16 6.2782 -2.3900 3.6085 10 6 8.0100 -2.3772 3.2837 11 1 8.3863 -1.9239 2.3785 12 6 8.8907 -2.9486 4.1917 13 7 10.1844 -2.9386 3.9493 14 14 8.2400 -3.7307 5.7584 15 1 7.9522 -5.1666 5.5121 16 1 9.2575 -3.6070 6.8330 17 1 6.9932 -3.0403 6.1754 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0183 -2.3571 20 8 1.8591 1.1586 -2.4114 21 6 2.6500 -0.7286 -3.5874 22 6 1.7822 -1.9476 -3.9065 23 6 4.1323 -1.1323 -3.4256 24 7 4.9048 -0.0235 -3.9979 25 6 4.1354 0.7575 -4.7758 26 8 4.5230 1.7375 -5.3758 27 6 2.7157 0.2352 -4.7948 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9823 -0.4628 0.4317 34 1 5.9637 -2.0990 1.2427 35 1 6.1092 -0.5380 2.0855 36 1 10.7999 -3.3376 4.5840 37 1 2.2491 -1.6317 -1.1525 38 1 2.2046 -2.4816 -4.7577 39 1 1.7527 -2.6092 -3.0408 40 1 0.7710 -1.6204 -4.1483 41 1 4.3762 -1.2569 -2.3706 42 1 4.3339 -2.0539 -3.9717 43 1 5.8493 0.1267 -3.8357 44 1 2.5191 -0.3018 -5.7227 45 1 2.0066 1.0534 -4.6688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758771265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:49 Heat of formation + Delta-G solvation = -116.867353 kcal Electronic energy + Delta-G solvation = -27794.991381 eV Core-core repulsion = 23745.310666 eV Total energy + Delta-G solvation = -4049.680715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57196 -39.86016 -39.18166 -37.07511 -36.50691 -33.99605 -33.36900 -32.49777 -31.46123 -29.62867 -28.78931 -26.72223 -26.18803 -25.61197 -24.10668 -21.55115 -20.99399 -20.59166 -20.28728 -18.26128 -17.82084 -17.43938 -16.91844 -16.50399 -16.30501 -15.66973 -15.57452 -15.27562 -15.23449 -15.01901 -14.53438 -14.34037 -14.04450 -13.77159 -13.70622 -13.34108 -13.26094 -13.24701 -13.09670 -12.85998 -12.81937 -12.61293 -12.36301 -12.07796 -12.03148 -11.66881 -11.43015 -11.32326 -11.06293 -10.68248 -10.30192 -10.20239 -9.92502 -9.72945 -9.62616 -9.50611 -9.18195 -9.05530 -8.57994 -6.99270 -6.34690 -4.07337 2.06112 2.29429 2.49374 2.67498 2.83581 2.94894 3.21533 3.28191 3.45223 3.56194 3.62480 3.83097 3.96569 4.18347 4.27330 4.30853 4.52338 4.62878 4.69709 4.79824 4.83431 4.93427 5.03840 5.04380 5.05514 5.14527 5.16672 5.19684 5.25935 5.41383 5.45005 5.48241 5.58287 5.65211 5.77168 5.90255 5.97451 6.32567 6.37678 6.61562 6.94286 7.41947 7.68514 7.88166 7.89302 8.33283 8.35415 9.11277 10.74511 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.002594 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.356674 B =10791.525956 C =12347.169009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.097 0.903 4 C 0.113 3.887 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.125 4.125 9 S -0.140 6.140 10 C -0.523 4.523 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.879 5.879 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 N -0.723 5.723 19 C 0.529 3.471 20 O -0.525 6.525 21 C -0.099 4.099 22 C -0.136 4.136 23 C 0.113 3.887 24 N -0.733 5.733 25 C 0.525 3.475 26 O -0.529 6.529 27 C -0.139 4.139 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.399 0.601 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.271 0.729 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.415 0.585 44 H 0.113 0.887 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 1.155 -16.886 26.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.115 0.885 4 C -0.012 4.012 5 N -0.394 5.394 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.275 4.275 9 S 0.086 5.914 10 C -0.671 4.671 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.516 5.516 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 N -0.376 5.376 19 C 0.314 3.686 20 O -0.400 6.400 21 C -0.103 4.103 22 C -0.193 4.193 23 C -0.012 4.012 24 N -0.390 5.390 25 C 0.311 3.689 26 O -0.405 6.405 27 C -0.179 4.179 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.254 0.746 44 H 0.131 0.869 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -21.013 1.719 -15.594 26.223 hybrid contribution 1.539 -0.184 -0.573 1.652 sum -19.474 1.535 -16.167 25.357 Atomic orbital electron populations 1.22097 0.93780 1.02769 1.03248 1.21289 0.95149 0.97898 0.83046 0.88514 1.21637 0.80926 1.01429 0.97161 1.45958 1.06899 1.61910 1.24590 1.20301 0.89469 0.76844 0.81699 1.90715 1.69829 1.46082 1.32392 1.23278 0.93281 1.05583 1.05404 1.84806 1.06993 1.75221 1.24338 1.22302 0.88625 1.44832 1.11296 0.89409 1.24716 0.94096 0.94505 0.97961 1.69934 1.01564 1.43362 1.36718 0.86737 0.80832 0.81193 0.83099 1.19188 1.19901 1.15918 1.46081 1.67650 1.14372 1.09491 1.20104 0.77372 0.87025 0.84079 1.90752 1.49119 1.15601 1.84505 1.21762 0.96498 0.97738 0.94290 1.21806 0.99707 0.94740 1.03083 1.22165 0.88183 0.90431 1.00447 1.46210 1.13239 1.29002 1.50522 1.20780 0.88406 0.82091 0.77620 1.90772 1.78513 1.25853 1.45381 1.22397 0.96672 1.00872 0.97992 0.91901 0.90972 0.91516 0.89810 0.90727 0.76724 0.88580 0.88485 0.91877 0.76100 0.90472 0.91179 0.90929 0.89671 0.89248 0.74569 0.86886 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 9.48 37.16 0.35 -0.60 16 2 C 0.13 0.89 2.73 -67.93 -0.19 0.70 16 3 H 0.10 0.83 7.58 -51.93 -0.39 0.44 16 4 C 0.11 0.95 5.23 -4.04 -0.02 0.93 16 5 N -0.74 -7.66 5.39 -60.29 -0.32 -7.98 16 6 C 0.53 8.35 7.85 -10.99 -0.09 8.26 16 7 O -0.52 -10.13 15.86 5.56 0.09 -10.04 16 8 C -0.12 -2.22 6.16 36.01 0.22 -1.99 16 9 S -0.14 -3.38 18.55 -107.50 -1.99 -5.38 16 10 C -0.52 -14.59 10.04 30.94 0.31 -14.28 16 11 H 0.09 2.55 8.03 -52.48 -0.42 2.13 16 12 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 13 N -0.88 -26.01 13.97 55.49 0.78 -25.23 16 14 Si 0.86 21.22 27.74 -169.99 -4.72 16.50 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.24 -5.81 6.74 56.52 0.38 -5.43 16 18 N -0.72 -4.03 4.32 -53.81 -0.23 -4.26 16 19 C 0.53 3.96 6.48 -10.98 -0.07 3.89 16 20 O -0.52 -6.15 15.19 5.56 0.08 -6.07 16 21 C -0.10 -0.50 0.85 -154.03 -0.13 -0.63 16 22 C -0.14 -0.32 8.41 37.16 0.31 -0.01 16 23 C 0.11 0.52 6.89 -3.13 -0.02 0.50 16 24 N -0.73 -5.53 6.24 -59.21 -0.37 -5.90 16 25 C 0.52 5.52 8.43 -10.86 -0.09 5.43 16 26 O -0.53 -8.05 18.03 5.56 0.10 -7.95 16 27 C -0.14 -0.99 5.76 -26.74 -0.15 -1.15 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 3.37 8.14 -40.82 -0.33 3.03 16 34 H 0.10 1.53 8.14 -51.92 -0.42 1.11 16 35 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.40 1.52 7.84 -40.82 -0.32 1.20 16 38 H 0.08 0.10 8.05 -51.93 -0.42 -0.32 16 39 H 0.07 0.10 7.38 -51.93 -0.38 -0.29 16 40 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.08 0.33 7.83 -51.93 -0.41 -0.07 16 42 H 0.09 0.24 7.82 -51.93 -0.41 -0.17 16 43 H 0.41 2.88 8.96 -40.82 -0.37 2.52 16 44 H 0.11 0.53 7.90 -51.93 -0.41 0.12 16 45 H 0.12 1.05 7.01 -51.93 -0.36 0.69 16 LS Contribution 390.01 15.07 5.88 5.88 Total: -1.00 -38.34 390.01 -7.13 -45.47 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -6.76 Total: 1.28 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 0.34 Total: 3.69 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: -0.15 Total: -43.38 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.27 Total: -24.06 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.72 Total: 16.50 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -1.99 Total: -5.38 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.34 -7.13 -45.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758771265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.399 kcal (2) G-P(sol) polarization free energy of solvation -38.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds