Wall clock time and date at job start Wed Apr 1 2020 02:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47205 * 2 1 4 4 C 1.53002 * 109.47116 * 119.99806 * 2 1 3 5 5 N 1.46497 * 109.47319 * 175.00080 * 4 2 1 6 6 C 1.34772 * 120.00356 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99842 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00104 * 180.02562 * 6 5 4 9 9 S 1.81000 * 109.47017 * 179.97438 * 8 6 5 10 10 C 1.76202 * 100.00044 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99890 * 0.02562 * 10 9 8 12 12 C 1.38800 * 120.00057 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00031 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99990 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.46726 * 90.00148 * 14 12 10 16 16 H 1.48506 * 109.47014 * 210.00033 * 14 12 10 17 17 H 1.48498 * 109.47083 * 330.00085 * 14 12 10 18 18 N 1.46502 * 109.47260 * 239.99722 * 2 1 3 19 19 C 1.34774 * 119.99515 * 85.00104 * 18 2 1 20 20 O 1.21282 * 120.00410 * 0.02562 * 19 18 2 21 21 C 1.50704 * 119.99610 * 179.97438 * 19 18 2 22 22 C 1.52998 * 110.88624 * 56.19255 * 21 19 18 23 23 C 1.54476 * 110.97160 * 292.37675 * 21 19 18 24 24 N 1.46755 * 105.47483 * 267.29802 * 23 21 19 25 25 C 1.34424 * 111.30504 * 342.98562 * 24 23 21 26 26 O 1.21276 * 124.94682 * 180.45440 * 25 24 23 27 27 C 1.51285 * 110.10841 * 0.40398 * 25 24 23 28 28 H 1.09006 * 109.46845 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47402 * 299.99943 * 1 2 3 30 30 H 1.08991 * 109.47139 * 60.00125 * 1 2 3 31 31 H 1.09001 * 109.47069 * 295.00131 * 4 2 1 32 32 H 1.09005 * 109.47056 * 55.00216 * 4 2 1 33 33 H 0.97000 * 119.99855 * 359.97438 * 5 4 2 34 34 H 1.09001 * 109.47153 * 299.99592 * 8 6 5 35 35 H 1.08998 * 109.47229 * 60.00201 * 8 6 5 36 36 H 0.96997 * 120.00074 * 179.97438 * 13 12 10 37 37 H 0.96992 * 120.00140 * 264.99675 * 18 2 1 38 38 H 1.08999 * 109.47523 * 183.81112 * 22 21 19 39 39 H 1.09001 * 109.46671 * 303.80793 * 22 21 19 40 40 H 1.08997 * 109.47249 * 63.80537 * 22 21 19 41 41 H 1.08999 * 110.24071 * 26.29741 * 23 21 19 42 42 H 1.09003 * 110.24382 * 148.29926 * 23 21 19 43 43 H 0.97008 * 124.35283 * 162.98250 * 24 23 21 44 44 H 1.09001 * 110.48858 * 257.57403 * 27 25 24 45 45 H 1.09000 * 110.47996 * 134.93514 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1730 -1.4291 2.1908 7 8 3.5699 -1.8841 3.1395 8 6 5.6749 -1.5367 2.1307 9 16 6.2782 -2.3900 3.6085 10 6 8.0100 -2.3772 3.2837 11 1 8.3863 -1.9239 2.3785 12 6 8.8907 -2.9486 4.1917 13 7 10.1844 -2.9386 3.9493 14 14 8.2400 -3.7307 5.7584 15 1 7.9522 -5.1666 5.5121 16 1 9.2575 -3.6070 6.8330 17 1 6.9932 -3.0403 6.1754 18 7 2.0183 -0.6907 -1.1961 19 6 2.1471 -0.0183 -2.3571 20 8 1.8591 1.1586 -2.4114 21 6 2.6500 -0.7286 -3.5874 22 6 1.7822 -1.9476 -3.9065 23 6 4.1323 -1.1323 -3.4256 24 7 4.9048 -0.0235 -3.9979 25 6 4.1354 0.7575 -4.7758 26 8 4.5230 1.7375 -5.3758 27 6 2.7157 0.2352 -4.7948 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8899 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9823 -0.4628 0.4317 34 1 5.9637 -2.0990 1.2427 35 1 6.1092 -0.5380 2.0855 36 1 10.7999 -3.3376 4.5840 37 1 2.2491 -1.6317 -1.1525 38 1 2.2046 -2.4816 -4.7577 39 1 1.7527 -2.6092 -3.0408 40 1 0.7710 -1.6204 -4.1483 41 1 4.3762 -1.2569 -2.3706 42 1 4.3339 -2.0539 -3.9717 43 1 5.8493 0.1267 -3.8357 44 1 2.5191 -0.3018 -5.7227 45 1 2.0066 1.0534 -4.6688 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758771265.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:49 Heat of formation + Delta-G solvation = -149.250247 kcal Electronic energy + Delta-G solvation = -27796.395609 eV Core-core repulsion = 23745.310666 eV Total energy + Delta-G solvation = -4051.084943 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.17361 -40.82025 -40.13913 -37.85288 -37.28382 -34.91785 -34.65807 -33.96822 -32.17636 -30.83743 -29.30721 -27.88607 -27.07601 -26.88493 -24.67044 -22.17274 -21.78416 -21.66230 -20.85484 -19.89183 -18.75570 -18.05757 -17.83961 -17.62661 -17.23836 -17.03437 -16.56009 -16.31727 -16.16985 -15.94954 -15.71100 -15.20847 -15.00301 -14.91672 -14.77512 -14.26367 -14.23752 -13.89126 -13.80819 -13.64279 -13.37938 -13.32800 -13.24560 -13.03197 -12.99121 -12.92721 -12.62108 -12.59298 -12.11249 -11.98221 -11.85861 -11.16042 -11.03417 -11.00910 -10.93928 -10.52061 -10.28451 -10.19345 -10.10917 -8.97843 -8.50768 -6.21199 1.00407 1.32304 1.45541 1.47780 1.54302 1.56208 1.57569 1.96298 2.22812 2.26857 2.37628 2.72430 2.87910 3.15814 3.30338 3.52210 3.59096 3.79970 3.87091 4.05335 4.12995 4.23776 4.27525 4.47871 4.48964 4.57075 4.59621 4.69790 4.74709 4.76593 4.79231 4.92897 4.96119 5.01325 5.24346 5.34184 5.36814 5.43152 5.71252 5.77966 5.93189 6.12420 6.39166 6.45008 6.94717 7.13896 7.16156 7.17263 8.61561 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012809 B = 0.002594 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.356674 B =10791.525956 C =12347.169009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.141 3.859 3 H 0.079 0.921 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.539 3.461 7 O -0.557 6.557 8 C -0.114 4.114 9 S -0.173 6.173 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.045 3.955 13 N -0.918 5.918 14 Si 0.914 3.086 15 H -0.260 1.260 16 H -0.263 1.263 17 H -0.236 1.236 18 N -0.709 5.709 19 C 0.528 3.472 20 O -0.572 6.572 21 C -0.088 4.088 22 C -0.133 4.133 23 C 0.108 3.892 24 N -0.728 5.728 25 C 0.511 3.489 26 O -0.591 6.591 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.411 0.589 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.276 0.724 37 H 0.417 0.583 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.416 0.584 44 H 0.141 0.859 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.857 -0.773 -17.077 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.036 3.964 3 H 0.097 0.903 4 C -0.007 4.007 5 N -0.367 5.367 6 C 0.324 3.676 7 O -0.435 6.435 8 C -0.264 4.264 9 S 0.054 5.946 10 C -0.676 4.676 11 H 0.080 0.920 12 C -0.160 4.160 13 N -0.556 5.556 14 Si 0.736 3.264 15 H -0.185 1.185 16 H -0.188 1.188 17 H -0.159 1.159 18 N -0.363 5.363 19 C 0.314 3.686 20 O -0.450 6.450 21 C -0.091 4.091 22 C -0.190 4.190 23 C -0.016 4.016 24 N -0.382 5.382 25 C 0.299 3.701 26 O -0.472 6.472 27 C -0.175 4.175 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.248 0.752 34 H 0.137 0.863 35 H 0.125 0.875 36 H 0.086 0.914 37 H 0.255 0.745 38 H 0.114 0.886 39 H 0.106 0.894 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.255 0.745 44 H 0.158 0.842 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.823 -0.258 -15.792 27.755 hybrid contribution 2.045 0.490 -0.624 2.193 sum -20.778 0.232 -16.416 26.482 Atomic orbital electron populations 1.22047 0.92713 1.03668 1.02946 1.21108 0.95807 0.96819 0.82716 0.90252 1.21755 0.79099 1.02191 0.97700 1.45697 1.07863 1.59754 1.23339 1.19857 0.88420 0.77143 0.82166 1.90711 1.70173 1.48382 1.34225 1.23282 0.95010 1.05449 1.02706 1.84709 1.04319 1.76681 1.28898 1.22473 0.90983 1.43910 1.10244 0.91990 1.25572 0.94331 0.95137 1.01000 1.70019 1.02776 1.44683 1.38164 0.85870 0.80360 0.80463 0.79713 1.18467 1.18752 1.15948 1.45956 1.66824 1.14846 1.08633 1.20558 0.76566 0.86485 0.84982 1.90750 1.51264 1.17794 1.85232 1.21756 0.97428 0.97973 0.91974 1.21866 0.99018 0.93453 1.04664 1.22514 0.87111 0.90338 1.01621 1.46333 1.13453 1.29109 1.49309 1.21414 0.90026 0.81538 0.77148 1.90726 1.79802 1.28550 1.48083 1.22400 0.93808 1.00957 1.00380 0.90363 0.90468 0.92684 0.90299 0.89585 0.75236 0.86319 0.87498 0.91426 0.74513 0.88559 0.89437 0.91067 0.88359 0.86048 0.74470 0.84167 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 71.98 0.68 -0.82 16 2 C 0.14 1.60 2.73 44.99 0.12 1.72 16 3 H 0.08 1.26 7.58 -2.39 -0.02 1.24 16 4 C 0.12 1.63 5.23 86.38 0.45 2.08 16 5 N -0.71 -12.67 5.39 -463.06 -2.49 -15.17 16 6 C 0.54 15.63 7.85 87.66 0.69 16.32 16 7 O -0.56 -20.85 15.86 -3.03 -0.05 -20.89 16 8 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 9 S -0.17 -8.19 18.55 -56.49 -1.05 -9.23 16 10 C -0.53 -29.56 10.04 67.95 0.68 -28.88 16 11 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 12 C 0.04 2.56 5.50 84.86 0.47 3.03 16 13 N -0.92 -54.76 13.97 21.65 0.30 -54.46 16 14 Si 0.91 43.56 27.74 68.60 1.90 45.47 16 15 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 16 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.24 -11.16 6.74 99.48 0.67 -10.49 16 18 N -0.71 -5.89 4.32 -442.53 -1.91 -7.80 16 19 C 0.53 6.93 6.48 87.66 0.57 7.49 16 20 O -0.57 -13.28 15.19 -3.04 -0.05 -13.32 16 21 C -0.09 -0.66 0.85 -51.87 -0.04 -0.71 16 22 C -0.13 -0.09 8.41 71.98 0.61 0.51 16 23 C 0.11 0.64 6.89 86.83 0.60 1.24 16 24 N -0.73 -10.08 6.24 -459.82 -2.87 -12.95 16 25 C 0.51 10.80 8.43 87.90 0.74 11.54 16 26 O -0.59 -18.96 18.03 -3.02 -0.05 -19.02 16 27 C -0.14 -1.80 5.76 30.59 0.18 -1.63 16 28 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.41 5.57 8.14 -92.71 -0.75 4.82 16 34 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.11 3.40 8.14 -2.40 -0.02 3.38 16 36 H 0.28 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.42 1.40 7.84 -92.71 -0.73 0.67 16 38 H 0.10 -0.22 8.05 -2.39 -0.02 -0.24 16 39 H 0.09 -0.20 7.38 -2.39 -0.02 -0.21 16 40 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 41 H 0.10 0.37 7.83 -2.39 -0.02 0.35 16 42 H 0.12 0.07 7.82 -2.39 -0.02 0.05 16 43 H 0.42 5.46 8.96 -92.70 -0.83 4.62 16 44 H 0.14 1.03 7.90 -2.39 -0.02 1.01 16 45 H 0.10 1.79 7.01 -2.39 -0.02 1.77 16 Total: -1.00 -87.01 390.01 -1.39 -88.41 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -1.31 Total: 10.43 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.18 Total: 8.55 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -6.97 Total: -90.38 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -0.15 Total: -53.24 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.47 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.05 Total: -9.23 kcal Total: -87.01 -1.39 -88.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758771265.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.843 kcal (2) G-P(sol) polarization free energy of solvation -87.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds