Wall clock time and date at job start Wed Apr 1 2020 02:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46499 * 109.47319 * 2 1 4 4 C 1.34775 * 120.00121 * 179.97438 * 3 2 1 5 5 O 1.21287 * 120.00283 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00311 * 180.02562 * 4 3 2 7 7 C 1.50698 * 109.47422 * 180.02562 * 6 4 3 8 8 O 1.21275 * 119.99964 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99864 * 179.97438 * 7 6 4 10 10 C 1.46498 * 120.00252 * 0.02562 * 9 7 6 11 11 C 1.46500 * 119.99865 * 180.02562 * 9 7 6 12 12 C 1.53501 * 114.20747 * 239.99936 * 11 9 7 13 13 N 1.47065 * 87.98741 * 220.14872 * 12 11 9 14 14 C 1.34775 * 136.05752 * 207.08848 * 13 12 11 15 15 O 1.21276 * 119.99984 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00022 * 180.02562 * 14 13 12 17 17 S 1.80998 * 109.47116 * 179.97438 * 16 14 13 18 18 C 1.76199 * 100.00013 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00250 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00102 * 179.72368 * 18 17 16 21 21 N 1.31634 * 120.00298 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99861 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47644 * 89.99884 * 22 20 18 24 24 H 1.48506 * 109.47143 * 209.99830 * 22 20 18 25 25 H 1.48501 * 109.47120 * 329.99545 * 22 20 18 26 26 C 1.47067 * 87.88377 * 27.34414 * 13 12 11 27 27 H 1.09000 * 109.46925 * 59.99840 * 1 2 3 28 28 H 1.08998 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47156 * 300.00277 * 1 2 3 30 30 H 1.09004 * 109.47208 * 240.00128 * 2 1 3 31 31 H 1.09000 * 109.46925 * 120.00160 * 2 1 3 32 32 H 0.96997 * 120.00118 * 0.02562 * 3 2 1 33 33 H 1.09004 * 109.47042 * 60.00030 * 6 4 3 34 34 H 1.09000 * 109.46896 * 300.00181 * 6 4 3 35 35 H 1.08997 * 109.47425 * 269.99969 * 10 9 7 36 36 H 1.08998 * 109.46947 * 30.00222 * 10 9 7 37 37 H 1.08999 * 109.47186 * 150.00105 * 10 9 7 38 38 H 1.09001 * 113.28417 * 13.06633 * 11 9 7 39 39 H 1.09001 * 113.46643 * 105.36573 * 12 11 9 40 40 H 1.09004 * 113.51834 * 334.94016 * 12 11 9 41 41 H 1.09001 * 109.47434 * 59.99478 * 16 14 13 42 42 H 1.08999 * 109.47072 * 299.99957 * 16 14 13 43 43 H 0.96995 * 120.00138 * 180.02562 * 21 20 18 44 44 H 1.09001 * 113.47005 * 87.43764 * 26 13 12 45 45 H 1.09003 * 113.46723 * 217.87945 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6274 0.0005 5 8 4.1315 0.7056 0.0005 6 6 3.8458 3.0482 0.0011 7 6 5.3528 3.0482 0.0010 8 8 5.9591 1.9979 0.0000 9 7 6.0266 4.2154 0.0009 10 6 5.2942 5.4841 0.0015 11 6 7.4916 4.2154 0.0002 12 6 8.1216 4.9151 1.2125 13 7 9.1247 5.4821 0.2986 14 6 10.3989 5.9091 0.4005 15 8 10.9702 5.8634 1.4693 16 6 11.1135 6.4444 -0.8135 17 16 12.7952 6.9337 -0.3568 18 6 13.3825 7.5036 -1.9172 19 1 12.7349 7.4753 -2.7811 20 6 14.6753 7.9948 -2.0349 21 7 15.1142 8.4202 -3.2007 22 14 15.7928 8.0511 -0.5391 23 1 16.5512 6.7783 -0.4396 24 1 16.7431 9.1843 -0.6735 25 1 14.9725 8.2356 0.6850 26 6 8.1232 5.3841 -0.7739 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 1.3880 2.1185 0.0004 33 1 3.4822 3.5618 0.8912 34 1 3.4827 3.5623 -0.8888 35 1 5.1120 5.7990 -1.0259 36 1 4.3420 5.3537 0.5158 37 1 5.8835 6.2436 0.5152 38 1 7.9224 3.2401 -0.2265 39 1 8.5416 4.2236 1.9430 40 1 7.4744 5.6657 1.6664 41 1 10.5756 7.3104 -1.1994 42 1 11.1554 5.6713 -1.5808 43 1 16.0178 8.7631 -3.2830 44 1 7.4758 6.2582 -0.8445 45 1 8.5445 5.0922 -1.7359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759954591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:41 Heat of formation + Delta-G solvation = -53.441095 kcal Electronic energy + Delta-G solvation = -26625.880980 eV Core-core repulsion = 22578.950634 eV Total energy + Delta-G solvation = -4046.930346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.18113 -40.25695 -38.96611 -37.63817 -35.68165 -35.11395 -32.44711 -32.08600 -30.73275 -29.86578 -28.05236 -27.23805 -26.10783 -25.58600 -23.84706 -22.47233 -21.04466 -19.56623 -19.16392 -18.09239 -17.73024 -17.07357 -16.82067 -16.66674 -16.62630 -16.01156 -15.84585 -15.32641 -14.96195 -14.93422 -14.48436 -14.21956 -13.95285 -13.71900 -13.51286 -13.30515 -13.06760 -13.01005 -12.90518 -12.78857 -12.76261 -12.52155 -12.49283 -12.37688 -11.94959 -11.89145 -11.29324 -11.24697 -11.00961 -10.63235 -10.47504 -9.87830 -9.78352 -9.57054 -9.51746 -9.04713 -9.00857 -8.74840 -8.51867 -6.93671 -6.29559 -4.01844 2.13524 2.17705 2.36110 2.58112 2.82533 2.93903 3.18766 3.33648 3.50444 3.56764 3.90632 4.04988 4.23771 4.31942 4.38424 4.47631 4.50007 4.54656 4.65163 4.66293 4.70716 4.79584 4.85347 4.95347 5.02231 5.09588 5.13087 5.17160 5.28621 5.29298 5.37431 5.49535 5.50802 5.64814 5.75512 5.78946 5.96333 5.99215 6.10287 6.87773 7.02576 7.68685 7.76781 7.93175 7.93409 8.35799 8.40762 9.16515 10.79603 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.036370 B = 0.001641 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.673588 B =17057.652361 C =17157.403883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.737 5.737 4 C 0.509 3.491 5 O -0.491 6.491 6 C -0.163 4.163 7 C 0.516 3.484 8 O -0.487 6.487 9 N -0.609 5.609 10 C 0.069 3.931 11 C 0.113 3.887 12 C 0.092 3.908 13 N -0.648 5.648 14 C 0.565 3.435 15 O -0.512 6.512 16 C -0.115 4.115 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.097 3.903 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C 0.090 3.910 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.391 -8.924 5.395 36.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.009 4.009 3 N -0.393 5.393 4 C 0.292 3.708 5 O -0.363 6.363 6 C -0.206 4.206 7 C 0.301 3.699 8 O -0.358 6.358 9 N -0.344 5.344 10 C -0.074 4.074 11 C 0.008 3.992 12 C -0.033 4.033 13 N -0.387 5.387 14 C 0.355 3.645 15 O -0.386 6.386 16 C -0.266 4.266 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.516 5.516 22 Si 0.681 3.319 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.034 4.034 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.232 0.768 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.115 0.885 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -33.198 -10.136 6.892 35.388 hybrid contribution -0.530 0.900 -0.899 1.378 sum -33.728 -9.235 5.993 35.480 Atomic orbital electron populations 1.22002 0.94369 1.03364 1.02481 1.21284 0.94159 0.82849 1.02595 1.46034 1.06860 1.08997 1.77379 1.20036 0.82375 0.90835 0.77512 1.90898 1.54372 1.45430 1.45551 1.21632 0.95111 0.97221 1.06630 1.19975 0.89046 0.83545 0.77312 1.90892 1.69177 1.30052 1.45679 1.47704 1.05706 1.06325 1.74683 1.21914 0.97125 0.85868 1.02509 1.22979 0.79021 1.00579 0.96654 1.23356 0.88480 0.96357 0.95086 1.49280 1.10307 1.65593 1.13525 1.19873 0.78472 0.75840 0.90349 1.90724 1.64482 1.53659 1.29700 1.23217 1.01312 1.03931 0.98125 1.84809 1.06670 1.82209 1.17769 1.22298 1.02491 1.48372 0.93756 0.89358 1.24699 0.96951 0.93331 0.96219 1.69936 1.18011 1.40352 1.23328 0.86742 0.81884 0.78866 0.84413 1.19149 1.19889 1.15936 1.23456 0.88889 0.97277 0.93805 0.91948 0.90729 0.91961 0.91449 0.91470 0.76758 0.85967 0.85927 0.91802 0.90675 0.90369 0.84539 0.89834 0.89861 0.88483 0.88416 0.91916 0.89292 0.89346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.35 10.03 37.15 0.37 0.02 16 2 C 0.11 0.58 6.39 -4.05 -0.03 0.56 16 3 N -0.74 -3.46 5.56 -60.30 -0.33 -3.80 16 4 C 0.51 4.22 7.82 -10.99 -0.09 4.13 16 5 O -0.49 -7.02 14.18 -18.96 -0.27 -7.29 16 6 C -0.16 -0.77 4.74 -29.04 -0.14 -0.90 16 7 C 0.52 4.81 7.67 -10.99 -0.08 4.73 16 8 O -0.49 -7.31 13.69 -18.95 -0.26 -7.57 16 9 N -0.61 -4.38 3.11 -173.56 -0.54 -4.92 16 10 C 0.07 0.21 8.92 59.85 0.53 0.74 16 11 C 0.11 1.08 4.57 -67.67 -0.31 0.77 16 12 C 0.09 1.00 8.17 -8.51 -0.07 0.93 16 13 N -0.65 -8.96 3.69 -185.07 -0.68 -9.64 16 14 C 0.57 10.62 8.10 -10.99 -0.09 10.53 16 15 O -0.51 -11.63 16.64 5.56 0.09 -11.54 16 16 C -0.12 -2.30 5.98 36.00 0.22 -2.09 16 17 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 18 C -0.52 -15.11 10.04 30.94 0.31 -14.80 16 19 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 20 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 21 N -0.88 -26.59 13.97 55.49 0.78 -25.82 16 22 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 23 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 26 C 0.09 0.85 7.85 -8.37 -0.07 0.79 16 27 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.10 8.14 -51.93 -0.42 -0.32 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.40 0.45 8.47 -40.82 -0.35 0.11 16 33 H 0.12 0.18 7.40 -51.93 -0.38 -0.21 16 34 H 0.12 0.19 8.11 -51.93 -0.42 -0.23 16 35 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 36 H 0.07 0.04 6.44 -51.93 -0.33 -0.29 16 37 H 0.08 0.25 6.18 -51.93 -0.32 -0.07 16 38 H 0.14 1.61 7.29 -51.93 -0.38 1.23 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.08 0.73 6.97 -51.93 -0.36 0.37 16 41 H 0.10 1.79 8.14 -51.91 -0.42 1.36 16 42 H 0.10 1.84 8.14 -51.92 -0.42 1.41 16 43 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.09 0.63 6.57 -51.93 -0.34 0.28 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -41.79 389.03 -8.29 -50.07 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -6.69 Total: -5.08 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 0.47 Total: 8.15 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.78 Total: -44.17 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.44 Total: -26.40 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -41.79 -8.29 -50.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759954591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.367 kcal (2) G-P(sol) polarization free energy of solvation -41.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds