Wall clock time and date at job start Wed Apr 1 2020 01:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00165 * 2 1 4 4 C 1.53001 * 109.47191 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.46902 * 65.00007 * 4 3 2 6 6 C 1.46504 * 120.00320 * 84.99927 * 5 4 3 7 7 C 1.50707 * 109.46935 * 275.00488 * 6 5 4 8 8 C 1.38227 * 119.62059 * 95.01845 * 7 6 5 9 9 C 1.38627 * 119.15702 * 179.74122 * 8 7 6 10 10 C 1.38669 * 118.42389 * 0.47826 * 9 8 7 11 11 C 1.38186 * 119.16143 * 359.49762 * 10 9 8 12 12 N 1.31856 * 119.61137 * 274.99275 * 7 6 5 13 13 S 1.65598 * 120.00244 * 264.99941 * 5 4 3 14 14 O 1.42105 * 106.40227 * 23.54261 * 13 5 4 15 15 O 1.42104 * 106.40491 * 156.45682 * 13 5 4 16 16 N 1.65593 * 107.22188 * 270.00248 * 13 5 4 17 17 C 1.46499 * 120.00409 * 89.99146 * 16 13 5 18 18 C 1.46502 * 119.99960 * 269.99874 * 16 13 5 19 19 C 1.50708 * 109.47052 * 94.99626 * 18 16 13 20 20 H 1.08002 * 119.99692 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99927 * 180.02562 * 19 18 16 22 22 N 1.31514 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99911 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46871 * 359.97438 * 23 21 19 25 25 H 1.48492 * 109.47367 * 119.99661 * 23 21 19 26 26 H 1.48503 * 109.46695 * 239.99496 * 23 21 19 27 27 H 1.09000 * 109.47262 * 300.00556 * 1 2 3 28 28 H 1.08999 * 109.46890 * 59.99623 * 1 2 3 29 29 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46711 * 59.99903 * 3 2 1 31 31 H 1.09000 * 109.47023 * 300.00178 * 3 2 1 32 32 H 1.08999 * 109.46828 * 305.00186 * 4 3 2 33 33 H 1.08992 * 109.46809 * 184.99901 * 4 3 2 34 34 H 1.08997 * 109.47679 * 154.99955 * 6 5 4 35 35 H 1.09003 * 109.46652 * 34.99915 * 6 5 4 36 36 H 1.07998 * 120.41916 * 359.95342 * 8 7 6 37 37 H 1.08008 * 120.78688 * 180.22921 * 9 8 7 38 38 H 1.08002 * 120.42244 * 179.78279 * 10 9 8 39 39 H 1.07996 * 119.61757 * 180.25243 * 11 10 9 40 40 H 1.09009 * 109.46926 * 90.00371 * 17 16 13 41 41 H 1.08996 * 109.47948 * 210.00430 * 17 16 13 42 42 H 1.09004 * 109.47077 * 330.01137 * 17 16 13 43 43 H 1.08995 * 109.47615 * 214.99258 * 18 16 13 44 44 H 1.09000 * 109.47133 * 334.99673 * 18 16 13 45 45 H 0.96999 * 120.00177 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.1828 1.3880 -2.4445 7 6 2.8708 1.5670 -3.1641 8 6 2.1058 2.6922 -2.9204 9 6 0.9032 2.8497 -3.5916 10 6 0.5083 1.8602 -4.4793 11 6 1.3259 0.7630 -4.6719 12 7 2.4661 0.6485 -4.0192 13 16 4.2424 -1.0693 -1.3165 14 8 3.4688 -1.6440 -0.2721 15 8 4.1064 -1.4435 -2.6806 16 7 5.8292 -1.3242 -0.9176 17 6 6.2076 -1.5386 0.4814 18 6 6.8548 -1.3353 -1.9637 19 6 7.4761 0.0335 -2.0725 20 1 7.1401 0.8318 -1.4273 21 6 8.4725 0.2668 -2.9965 22 7 8.8811 -0.7052 -3.7825 23 14 9.2430 1.9632 -3.1310 24 1 8.6118 2.8733 -2.1417 25 1 10.6995 1.8683 -2.8580 26 1 9.0297 2.4965 -4.5004 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8508 0.5685 0.8427 33 1 3.9784 2.1765 0.0902 34 1 4.8962 0.8971 -3.1063 35 1 4.5716 2.3629 -2.1501 36 1 2.4425 3.4408 -2.2186 37 1 0.2864 3.7204 -3.4241 38 1 -0.4243 1.9483 -5.0169 39 1 1.0275 -0.0100 -5.3646 40 1 6.1688 -2.6040 0.7091 41 1 7.2197 -1.1688 0.6449 42 1 5.5155 -1.0029 1.1311 43 1 7.6244 -2.0644 -1.7104 44 1 6.3990 -1.6042 -2.9166 45 1 9.5824 -0.5412 -4.4323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055269229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:34 Heat of formation + Delta-G solvation = -67.219356 kcal Electronic energy + Delta-G solvation = -30456.698383 eV Core-core repulsion = 26409.170567 eV Total energy + Delta-G solvation = -4047.527816 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.10855 -37.93245 -36.31432 -35.81710 -35.32709 -34.80773 -32.43771 -32.40355 -31.63839 -29.52147 -27.70411 -26.43986 -25.62782 -24.95596 -23.37327 -22.45742 -22.15901 -21.65676 -18.32490 -17.19034 -16.98454 -16.56282 -16.49588 -16.32015 -15.98657 -15.50421 -15.40536 -15.32295 -14.94315 -14.47535 -14.08721 -13.71727 -13.44173 -13.23953 -13.10647 -13.06185 -12.69453 -12.38900 -12.16235 -12.12398 -12.02504 -11.67705 -11.54575 -11.38791 -11.18110 -11.07057 -10.97323 -10.86612 -10.73392 -10.61321 -10.40274 -10.01963 -9.81332 -9.69888 -9.52172 -9.26164 -8.85859 -8.67001 -8.45318 -7.90566 -6.06633 -4.13248 1.11834 1.38248 1.57086 3.25380 3.33194 3.34968 3.56646 3.95991 4.02204 4.36271 4.42095 4.49087 4.78269 4.91025 5.05988 5.09460 5.13707 5.19311 5.23514 5.26515 5.29872 5.40916 5.44749 5.47797 5.64821 5.67283 5.70448 5.74993 5.80564 5.92354 6.13102 6.14219 6.17165 6.19732 6.35092 6.46220 6.66085 6.79858 6.97208 7.33746 7.43909 7.54727 7.76244 7.91476 8.21502 8.27521 8.92109 9.52310 11.01333 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011356 B = 0.005352 C = 0.004351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2465.040854 B = 5230.570520 C = 6433.667808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.362 6.362 3 C 0.030 3.970 4 C 0.129 3.871 5 N -0.990 5.990 6 C 0.173 3.827 7 C 0.120 3.880 8 C -0.167 4.167 9 C -0.084 4.084 10 C -0.182 4.182 11 C 0.099 3.901 12 N -0.443 5.443 13 S 2.779 3.221 14 O -0.978 6.978 15 O -0.956 6.956 16 N -1.001 6.001 17 C 0.107 3.893 18 C 0.243 3.757 19 C -0.537 4.537 20 H 0.063 0.937 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.891 3.109 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.283 1.283 27 H 0.036 0.964 28 H 0.032 0.968 29 H 0.083 0.917 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.153 0.847 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.035 0.965 44 H 0.052 0.948 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.460 8.438 5.536 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C -0.049 4.049 4 C 0.002 3.998 5 N -0.825 5.825 6 C 0.047 3.953 7 C -0.020 4.020 8 C -0.187 4.187 9 C -0.111 4.111 10 C -0.202 4.202 11 C -0.058 4.058 12 N -0.151 5.151 13 S 2.787 3.213 14 O -0.962 6.962 15 O -0.940 6.940 16 N -0.843 5.843 17 C -0.040 4.040 18 C 0.120 3.880 19 C -0.577 4.577 20 H 0.081 0.919 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.718 3.282 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.209 1.209 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.136 0.864 35 H 0.108 0.892 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.170 0.830 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.070 0.930 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.285 6.803 5.039 17.473 hybrid contribution -0.039 2.401 0.081 2.403 sum -15.324 9.204 5.120 18.595 Atomic orbital electron populations 1.22681 0.82302 1.02472 0.98996 1.88203 1.18409 1.26236 1.95118 1.23261 0.95265 0.86076 1.00279 1.21251 0.91805 1.00124 0.86581 1.58103 1.81567 1.27994 1.14838 1.20142 0.91865 0.97562 0.85762 1.21977 0.97200 0.89746 0.93082 1.21957 0.95901 0.99517 1.01362 1.21482 0.95927 0.98468 0.95174 1.22126 1.01450 0.96106 1.00502 1.22893 0.89897 0.96341 0.96691 1.67783 1.14616 1.27660 1.05080 1.02253 0.72720 0.72790 0.73553 1.93575 1.68688 1.75175 1.58770 1.93634 1.85623 1.80555 1.34151 1.57853 1.26847 1.85727 1.13903 1.21188 1.01427 0.99831 0.81507 1.19206 0.86104 0.97443 0.85218 1.21598 1.20136 0.96529 1.19408 0.91907 1.24960 0.96604 0.96890 0.95430 1.69947 1.29201 1.31746 1.21727 0.86569 0.79204 0.84415 0.77963 1.19702 1.21021 1.20893 0.94590 0.94923 0.89871 0.93120 0.92577 0.89530 0.89159 0.86427 0.89236 0.85066 0.85337 0.85272 0.82962 0.93956 0.91036 0.93136 0.94707 0.92985 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -5.91 8.76 -54.45 -0.48 -6.39 16 3 C 0.03 0.39 6.13 37.16 0.23 0.62 16 4 C 0.13 1.77 5.84 -4.04 -0.02 1.75 16 5 N -0.99 -17.28 2.80 -115.66 -0.32 -17.61 16 6 C 0.17 2.96 5.68 -5.19 -0.03 2.93 16 7 C 0.12 1.94 5.78 -82.58 -0.48 1.46 16 8 C -0.17 -2.04 7.28 -39.44 -0.29 -2.33 16 9 C -0.08 -0.90 10.18 -39.28 -0.40 -1.30 16 10 C -0.18 -2.02 10.11 -39.44 -0.40 -2.42 16 11 C 0.10 1.42 11.18 -17.55 -0.20 1.22 16 12 N -0.44 -8.03 9.82 -9.47 -0.09 -8.12 16 13 S 2.78 59.53 5.93 -107.50 -0.64 58.89 16 14 O -0.98 -21.63 14.36 -65.29 -0.94 -22.56 16 15 O -0.96 -23.67 15.21 -57.17 -0.87 -24.54 16 16 N -1.00 -21.69 3.23 -123.05 -0.40 -22.09 16 17 C 0.11 1.93 10.31 59.85 0.62 2.55 16 18 C 0.24 6.17 5.41 -5.19 -0.03 6.14 16 19 C -0.54 -13.92 9.38 -34.44 -0.32 -14.25 16 20 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.44 13.29 55.43 0.74 -24.71 16 23 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.70 4.78 -51.93 -0.25 0.45 16 32 H 0.09 1.21 7.26 -51.93 -0.38 0.83 16 33 H 0.09 0.94 8.00 -51.93 -0.42 0.52 16 34 H 0.12 2.43 7.61 -51.93 -0.40 2.03 16 35 H 0.09 1.23 7.90 -51.93 -0.41 0.82 16 36 H 0.13 1.25 8.02 -52.49 -0.42 0.83 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 42 H 0.05 0.79 7.44 -51.93 -0.39 0.41 16 43 H 0.03 0.92 8.11 -51.93 -0.42 0.50 16 44 H 0.05 1.47 6.91 -51.93 -0.36 1.11 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -35.20 383.13 -9.33 -44.53 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.78 Total: 1.95 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -0.30 Total: -0.48 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.08 Total: -72.52 kcal Atomic # 8 Polarization: -51.21 SS G_CDS: -2.28 Total: -53.50 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 59.53 SS G_CDS: -0.64 Total: 58.89 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.20 -9.33 -44.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055269229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.692 kcal (2) G-P(sol) polarization free energy of solvation -35.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds