Wall clock time and date at job start Wed Apr 1 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42893 * 113.99879 * 2 1 4 4 C 1.52999 * 109.47001 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47383 * 65.00068 * 4 3 2 6 6 C 1.46500 * 119.99836 * 270.00349 * 5 4 3 7 7 C 1.53007 * 109.46707 * 269.99703 * 6 5 4 8 8 F 1.39895 * 109.47291 * 299.99820 * 7 6 5 9 9 F 1.39892 * 109.47218 * 60.00478 * 7 6 5 10 10 C 1.34774 * 120.00119 * 90.00096 * 5 4 3 11 11 O 1.21282 * 120.00304 * 0.02562 * 10 5 4 12 12 C 1.50704 * 120.00135 * 180.02562 * 10 5 4 13 13 C 1.50699 * 109.47208 * 180.02562 * 12 10 5 14 14 C 1.38328 * 119.96230 * 269.97915 * 13 12 10 15 15 C 1.38281 * 120.13505 * 180.02562 * 14 13 12 16 16 C 1.38120 * 120.06679 * 359.68445 * 15 14 13 17 17 C 1.38852 * 119.93490 * 0.58817 * 16 15 14 18 18 O 1.35752 * 120.07221 * 179.70368 * 17 16 15 19 19 C 1.34829 * 116.99954 * 354.17311 * 18 17 16 20 20 H 1.07998 * 119.99999 * 5.03596 * 19 18 17 21 21 C 1.38656 * 119.99670 * 185.03445 * 19 18 17 22 22 N 1.31550 * 120.00275 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99668 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46814 * 90.00164 * 23 21 19 25 25 H 1.48501 * 109.47378 * 210.00272 * 23 21 19 26 26 H 1.48503 * 109.47143 * 330.00397 * 23 21 19 27 27 C 1.38073 * 119.96534 * 89.99715 * 13 12 10 28 28 H 1.08998 * 109.47446 * 59.99327 * 1 2 3 29 29 H 1.09000 * 109.47406 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46997 * 299.99413 * 1 2 3 31 31 H 1.09001 * 109.47684 * 60.00399 * 3 2 1 32 32 H 1.08998 * 109.47413 * 300.00045 * 3 2 1 33 33 H 1.09006 * 109.47148 * 305.00097 * 4 3 2 34 34 H 1.09003 * 109.47251 * 185.00420 * 4 3 2 35 35 H 1.08998 * 109.47367 * 29.99262 * 6 5 4 36 36 H 1.08997 * 109.47036 * 149.99798 * 6 5 4 37 37 H 1.09002 * 109.46988 * 179.97438 * 7 6 5 38 38 H 1.09002 * 109.46571 * 59.99894 * 12 10 5 39 39 H 1.08992 * 109.46782 * 300.00158 * 12 10 5 40 40 H 1.08001 * 119.93314 * 0.02562 * 14 13 12 41 41 H 1.07993 * 119.96315 * 179.97438 * 15 14 13 42 42 H 1.08001 * 120.03256 * 180.31909 * 16 15 14 43 43 H 0.96999 * 119.99936 * 179.97438 * 22 21 19 44 44 H 1.07996 * 120.03547 * 0.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1051 -0.8921 -1.3428 7 6 5.5223 -1.3040 -0.9388 8 9 6.4463 -0.6997 -1.7979 9 9 5.7702 -0.8942 0.3756 10 6 4.2615 1.3337 -2.3218 11 8 4.1548 2.5395 -2.2472 12 6 4.7139 0.6956 -3.6100 13 6 4.9670 1.7668 -4.6393 14 6 3.9433 2.1794 -5.4731 15 6 4.1718 3.1617 -6.4192 16 6 5.4219 3.7384 -6.5300 17 6 6.4531 3.3224 -5.6984 18 8 7.6844 3.8831 -5.8089 19 6 7.8732 4.7504 -6.8238 20 1 7.0429 5.0331 -7.4540 21 6 9.1332 5.2794 -7.0583 22 7 10.1446 4.9346 -6.2910 23 14 9.3949 6.4805 -8.4649 24 1 9.1757 7.8666 -7.9792 25 1 10.7827 6.3489 -8.9766 26 1 8.4342 6.1809 -9.5569 27 6 6.2206 2.3350 -4.7494 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8514 0.5681 0.8410 34 1 3.9785 2.1765 0.0890 35 1 3.3852 -1.3630 -0.6734 36 1 3.9119 -1.2114 -2.3668 37 1 5.6185 -2.3877 -1.0053 38 1 3.9395 0.0192 -3.9718 39 1 5.6326 0.1359 -3.4351 40 1 2.9636 1.7336 -5.3849 41 1 3.3706 3.4814 -7.0690 42 1 5.5983 4.5091 -7.2657 43 1 11.0262 5.3044 -6.4554 44 1 7.0196 2.0119 -4.0986 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089791815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:15:20 Heat of formation + Delta-G solvation = -178.827770 kcal Electronic energy + Delta-G solvation = -30397.710231 eV Core-core repulsion = 25759.209573 eV Total energy + Delta-G solvation = -4638.500658 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.12336 -47.14270 -40.11689 -38.84015 -38.03720 -36.47167 -35.68140 -32.46860 -32.09407 -31.07661 -29.24304 -28.88466 -27.18138 -26.30085 -25.16813 -23.58277 -23.20926 -21.56774 -20.85591 -19.27769 -17.98642 -17.67302 -17.49511 -17.27238 -16.93620 -16.74769 -16.46742 -16.17852 -15.45240 -15.19733 -15.03575 -14.80253 -14.33474 -14.15807 -14.03866 -13.73607 -13.60439 -13.37556 -13.29170 -12.95492 -12.79803 -12.60105 -12.58671 -12.36717 -12.29888 -12.11413 -11.74655 -11.58003 -11.42692 -11.26895 -11.20288 -10.75905 -10.69663 -10.52476 -10.38391 -10.05488 -9.67746 -9.25091 -8.88571 -8.76075 -7.97124 -7.12904 -6.36247 -3.95163 2.16473 2.47483 2.68330 2.79503 3.18405 3.18509 3.23523 3.42461 3.62987 4.01676 4.03443 4.18722 4.35796 4.64152 4.77439 4.82430 4.91173 4.97951 5.03295 5.05231 5.11216 5.15768 5.18069 5.21020 5.29969 5.33958 5.49406 5.62851 5.64711 5.73284 5.87055 6.01470 6.25217 6.29163 6.44045 6.73771 6.78501 7.01128 7.15647 7.21050 7.36685 7.45096 7.53225 7.91854 8.08937 8.22864 9.09399 9.81463 10.82152 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.016308 B = 0.002632 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1716.564954 B =10636.254383 C =11555.172504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.045 3.955 4 C 0.118 3.882 5 N -0.614 5.614 6 C 0.065 3.935 7 C 0.239 3.761 8 F -0.196 7.196 9 F -0.203 7.203 10 C 0.521 3.479 11 O -0.511 6.511 12 C -0.104 4.104 13 C -0.032 4.032 14 C -0.197 4.197 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.091 0.909 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.940 3.060 24 H -0.274 1.274 25 H -0.278 1.278 26 H -0.268 1.268 27 C -0.172 4.172 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.109 0.891 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.932 -15.554 12.102 25.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C -0.033 4.033 4 C -0.005 4.005 5 N -0.348 5.348 6 C -0.061 4.061 7 C 0.184 3.816 8 F -0.178 7.178 9 F -0.185 7.185 10 C 0.310 3.690 11 O -0.384 6.384 12 C -0.144 4.144 13 C -0.032 4.032 14 C -0.216 4.216 15 C -0.094 4.094 16 C -0.251 4.251 17 C 0.102 3.898 18 O -0.083 6.083 19 C -0.466 4.466 20 H 0.108 0.892 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.199 1.199 25 H -0.203 1.203 26 H -0.192 1.192 27 C -0.191 4.191 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.120 0.880 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.383 -14.966 12.290 25.366 hybrid contribution -0.097 0.884 -0.620 1.084 sum -16.480 -14.082 11.669 24.619 Atomic orbital electron populations 1.22717 0.81100 1.02563 1.00025 1.87806 1.19678 1.28128 1.95485 1.23046 0.94414 0.84793 1.01041 1.21566 0.91807 1.00909 0.86195 1.47789 1.68678 1.05635 1.12741 1.22774 0.94550 0.82860 1.05892 1.22663 0.88805 0.97203 0.72933 1.92981 1.68913 1.86143 1.69737 1.92975 1.95236 1.92697 1.37564 1.20867 0.76123 0.87306 0.84734 1.90749 1.50458 1.14102 1.83134 1.20858 1.03822 0.98270 0.91416 1.18655 0.93289 0.96194 0.95101 1.20331 0.97619 1.02990 1.00699 1.20657 0.95908 0.95630 0.97164 1.21162 0.93624 1.05490 1.04775 1.19277 0.86296 0.91139 0.93114 1.83982 1.25004 1.52451 1.46907 1.21312 0.95963 1.21275 1.08099 0.89164 1.25270 0.94279 0.98368 0.98657 1.70044 1.00568 1.42025 1.37343 0.85728 0.78130 0.79746 0.79893 1.19947 1.20310 1.19248 1.19966 0.97001 1.00057 1.02092 0.94100 0.89724 0.94185 0.92320 0.92530 0.89326 0.87993 0.86352 0.87241 0.86498 0.88678 0.86987 0.88104 0.87563 0.85662 0.92132 0.86779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.46 9.53 -35.23 -0.34 -3.79 16 3 C 0.04 0.42 6.28 37.16 0.23 0.65 16 4 C 0.12 1.23 5.61 -4.04 -0.02 1.21 16 5 N -0.61 -6.97 2.35 -173.68 -0.41 -7.37 16 6 C 0.06 0.48 5.42 -4.04 -0.02 0.45 16 7 C 0.24 1.89 5.60 37.16 0.21 2.10 16 8 F -0.20 -2.32 14.31 2.25 0.03 -2.29 16 9 F -0.20 -2.08 16.25 2.25 0.04 -2.05 16 10 C 0.52 7.97 7.33 -10.98 -0.08 7.88 16 11 O -0.51 -10.12 15.61 5.56 0.09 -10.04 16 12 C -0.10 -1.50 4.31 -29.03 -0.13 -1.62 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.68 9.70 -39.53 -0.38 -4.06 16 15 C -0.08 -1.49 10.04 -39.61 -0.40 -1.89 16 16 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 17 C 0.15 4.00 6.65 -39.11 -0.26 3.74 16 18 O -0.18 -5.39 9.76 0.05 0.00 -5.39 16 19 C -0.39 -11.35 9.49 30.89 0.29 -11.06 16 20 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 21 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 22 N -0.86 -26.22 13.67 55.48 0.76 -25.46 16 23 Si 0.94 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 27 C -0.17 -3.95 9.65 -39.39 -0.38 -4.33 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.80 7.25 -51.93 -0.38 0.42 16 34 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.12 0.69 7.11 -51.93 -0.37 0.32 16 36 H 0.11 0.61 6.44 -51.93 -0.33 0.28 16 37 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 1.04 7.35 -51.93 -0.38 0.65 16 39 H 0.11 1.52 5.42 -51.93 -0.28 1.24 16 40 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 43 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.11 2.60 8.06 -52.49 -0.42 2.18 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -36.91 375.65 -5.57 -42.48 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.64 Total: 3.46 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -0.74 Total: -11.40 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.35 Total: -32.83 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.25 Total: -19.22 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.07 Total: -4.33 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.91 -5.57 -42.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089791815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.345 kcal (2) G-P(sol) polarization free energy of solvation -36.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds