Wall clock time and date at job start Wed Apr 1 2020 01:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46899 * 111.00031 * 2 1 4 4 C 1.50698 * 109.47226 * 66.04592 * 3 2 1 5 5 O 1.21282 * 119.99819 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00232 * 179.97438 * 4 3 2 7 7 C 1.46499 * 120.00342 * 180.02562 * 6 4 3 8 8 H 1.09008 * 110.00930 * 34.30175 * 7 6 4 9 9 C 1.53870 * 110.03021 * 272.92102 * 7 6 4 10 10 C 1.54190 * 108.69153 * 193.57140 * 9 7 6 11 11 S 1.82920 * 105.11098 * 27.83641 * 10 9 7 12 12 O 1.42102 * 109.35137 * 244.51755 * 11 10 9 13 13 O 1.42101 * 109.35175 * 111.31427 * 11 10 9 14 14 C 1.55046 * 110.02814 * 155.67907 * 7 6 4 15 15 C 1.46897 * 110.99497 * 236.04635 * 2 1 3 16 16 C 1.52996 * 109.47615 * 293.94957 * 15 2 1 17 17 H 1.09006 * 109.46862 * 55.00392 * 16 15 2 18 18 C 1.47194 * 109.47302 * 295.00862 * 16 15 2 19 19 N 3.66493 * 112.02608 * 160.59170 * 2 1 3 20 20 C 1.53002 * 109.47535 * 174.99971 * 16 15 2 21 21 C 1.50696 * 109.46997 * 185.00050 * 20 16 15 22 22 H 1.07999 * 120.00319 * 0.02562 * 21 20 16 23 23 C 1.37885 * 119.99717 * 180.02562 * 21 20 16 24 24 N 1.31516 * 119.99913 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99766 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.47353 * 269.99586 * 25 23 21 27 27 H 1.48501 * 109.47293 * 30.00037 * 25 23 21 28 28 H 1.48504 * 109.46680 * 149.99835 * 25 23 21 29 29 H 1.08997 * 109.47627 * 183.95415 * 1 2 3 30 30 H 1.09004 * 109.47134 * 303.95665 * 1 2 3 31 31 H 1.09000 * 109.47353 * 63.94897 * 1 2 3 32 32 H 1.09003 * 109.46871 * 186.04723 * 3 2 1 33 33 H 1.09002 * 109.46998 * 306.04890 * 3 2 1 34 34 H 0.97002 * 119.99715 * 0.02562 * 6 4 3 35 35 H 1.09005 * 109.64817 * 313.38179 * 9 7 6 36 36 H 1.09007 * 109.64368 * 73.67248 * 9 7 6 37 37 H 1.08998 * 110.27326 * 268.94147 * 10 9 7 38 38 H 1.09003 * 110.42361 * 146.80814 * 10 9 7 39 39 H 1.09001 * 110.79091 * 279.99446 * 14 7 6 40 40 H 1.08995 * 110.79262 * 43.45518 * 14 7 6 41 41 H 1.09010 * 109.46747 * 173.95144 * 15 2 1 42 42 H 1.08995 * 109.47428 * 53.96003 * 15 2 1 43 43 H 1.09005 * 109.46767 * 65.00401 * 20 16 15 44 44 H 1.09002 * 109.47113 * 305.00741 * 20 16 15 45 45 H 0.97001 * 119.99646 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0055 1.4453 2.1410 6 7 2.0189 3.3198 1.5237 7 6 1.6709 3.9765 2.7862 8 1 1.6818 3.2508 3.5995 9 6 0.2797 4.6249 2.6770 10 6 0.0860 5.5828 3.8696 11 16 1.7723 6.1291 4.3212 12 8 2.0851 5.6617 5.6261 13 8 1.9212 7.5067 4.0058 14 6 2.6730 5.1217 3.0829 15 6 1.9953 -0.7660 -1.1376 16 6 1.6314 -2.2426 -0.9704 17 1 0.5531 -2.3389 -0.8433 18 6 2.3155 -2.7854 0.2145 19 7 2.8435 -3.2044 1.1290 20 6 2.0698 -3.0199 -2.2132 21 6 1.6030 -4.4485 -2.1028 22 1 1.0487 -4.7698 -1.2334 23 6 1.8835 -5.3454 -3.1118 24 7 1.4757 -6.5920 -3.0157 25 14 2.8429 -4.7897 -4.6152 26 1 1.8989 -4.2997 -5.6516 27 1 3.7709 -3.6950 -4.2335 28 1 3.6216 -5.9328 -5.1557 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3634 0.4513 -0.9232 32 1 3.0797 1.3443 -0.1083 33 1 1.5610 1.9273 -0.8309 34 1 2.5242 3.8010 0.8499 35 1 0.2078 5.1833 1.7436 36 1 -0.4879 3.8512 2.6988 37 1 -0.3780 5.0575 4.7044 38 1 -0.5229 6.4378 3.5757 39 1 3.5978 4.7272 3.5040 40 1 2.8736 5.7032 2.1831 41 1 3.0797 -0.6611 -1.1757 42 1 1.5611 -0.3872 -2.0628 43 1 3.1569 -2.9979 -2.2908 44 1 1.6328 -2.5623 -3.1008 45 1 1.6728 -7.2228 -3.7257 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161830113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:42 Heat of formation + Delta-G solvation = -67.563084 kcal Electronic energy + Delta-G solvation = -27225.878645 eV Core-core repulsion = 23178.335924 eV Total energy + Delta-G solvation = -4047.542721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -40.41695 -38.20667 -37.61449 -37.07714 -36.55122 -35.49042 -33.63742 -33.53415 -31.87308 -30.40133 -28.55520 -27.64955 -25.72583 -24.84924 -22.42856 -21.50183 -21.47661 -20.84592 -19.39671 -17.84626 -17.56929 -17.12969 -16.93143 -16.68814 -16.31145 -16.12098 -15.73106 -15.24944 -15.02137 -14.81550 -14.60138 -14.33156 -14.11200 -13.58838 -13.34011 -13.11084 -12.94292 -12.89768 -12.87902 -12.68825 -12.57713 -12.44972 -12.21407 -11.98547 -11.80437 -11.78503 -11.62483 -11.42301 -11.36588 -11.22896 -11.04481 -10.73659 -10.40977 -10.14174 -9.93133 -9.73081 -9.64743 -9.33894 -8.63916 -8.36907 -6.12288 -4.13041 -0.60546 1.84515 2.30231 2.57366 2.95330 3.22853 3.31725 3.32569 3.37426 3.62499 3.70165 3.79165 3.88688 3.96634 4.01533 4.14614 4.25183 4.35763 4.48266 4.76874 4.80626 4.82920 4.90375 5.00965 5.04512 5.22092 5.22513 5.27534 5.32185 5.40939 5.59115 5.63490 5.78988 5.84324 6.08683 6.16874 6.31079 6.77669 6.87907 6.97224 7.06583 7.10763 7.61437 7.88032 8.39213 8.56909 8.91872 9.47116 11.00823 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.032168 B = 0.001809 C = 0.001789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.208055 B =15474.554734 C =15647.531059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.528 5.528 3 C 0.037 3.963 4 C 0.515 3.485 5 O -0.508 6.508 6 N -0.725 5.725 7 C 0.151 3.849 8 H 0.114 0.886 9 C -0.130 4.130 10 C -0.588 4.588 11 S 2.397 3.603 12 O -0.929 6.929 13 O -0.934 6.934 14 C -0.607 4.607 15 C 0.060 3.940 16 C 0.021 3.979 17 H 0.107 0.893 18 C 0.251 3.749 19 N -0.468 5.468 20 C -0.005 4.005 21 C -0.528 4.528 22 H 0.074 0.926 23 C 0.070 3.930 24 N -0.896 5.896 25 Si 0.878 3.122 26 H -0.275 1.275 27 H -0.264 1.264 28 H -0.287 1.287 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.024 0.976 32 H 0.106 0.894 33 H 0.067 0.933 34 H 0.405 0.595 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.081 0.919 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.032 0.968 45 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 30.751 6.019 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.252 5.252 3 C -0.094 4.094 4 C 0.301 3.699 5 O -0.381 6.381 6 N -0.380 5.380 7 C 0.044 3.956 8 H 0.132 0.868 9 C -0.170 4.170 10 C -0.718 4.718 11 S 2.579 3.421 12 O -0.926 6.926 13 O -0.931 6.931 14 C -0.736 4.736 15 C -0.068 4.068 16 C -0.001 4.001 17 H 0.125 0.875 18 C -0.066 4.066 19 N -0.145 5.145 20 C -0.044 4.044 21 C -0.565 4.565 22 H 0.092 0.908 23 C -0.132 4.132 24 N -0.534 5.534 25 Si 0.705 3.295 26 H -0.201 1.201 27 H -0.189 1.189 28 H -0.213 1.213 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.043 0.957 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.240 0.760 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.159 0.841 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.050 0.950 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.746 29.871 9.056 31.223 hybrid contribution -0.018 0.310 -2.925 2.941 sum -0.764 30.182 6.132 30.808 Atomic orbital electron populations 1.22635 0.86266 1.03750 1.00676 1.61671 1.09142 1.10425 1.43962 1.21950 1.02472 0.90989 0.94003 1.20815 0.78944 0.80636 0.89508 1.90728 1.37918 1.63493 1.45935 1.45878 1.59203 1.14134 1.18775 1.21482 0.90623 0.93473 0.90057 0.86779 1.22364 0.98381 0.99170 0.97051 1.30468 1.22584 1.10262 1.08507 1.08872 0.79972 0.76322 0.76934 1.93662 1.82474 1.82438 1.34054 1.93638 1.84922 1.29203 1.85368 1.31063 1.11358 1.12076 1.19083 1.22329 1.00766 0.92672 0.91048 1.18965 0.99855 0.91728 0.89515 0.87539 1.28639 0.92987 0.91784 0.93189 1.81001 1.10477 1.10335 1.12667 1.19641 0.97396 0.96334 0.90983 1.21020 1.36646 0.92074 1.06806 0.90751 1.25006 0.95211 0.94735 0.98247 1.69909 1.46112 1.03589 1.33792 0.86810 0.80682 0.78683 0.83302 1.20093 1.18884 1.21317 0.90386 0.89990 0.95741 0.87623 0.91554 0.76028 0.89302 0.88073 0.84055 0.83993 0.83572 0.83757 0.90096 0.92581 0.95646 0.94978 0.92558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 8.97 60.06 0.54 0.71 16 2 N -0.53 -6.49 4.20 -244.37 -1.03 -7.52 16 3 C 0.04 0.31 5.45 -4.98 -0.03 0.28 16 4 C 0.51 4.70 7.51 -10.99 -0.08 4.62 16 5 O -0.51 -6.84 14.00 5.56 0.08 -6.76 16 6 N -0.73 -3.73 5.13 -52.32 -0.27 -4.00 16 7 C 0.15 0.73 2.90 -66.40 -0.19 0.54 16 8 H 0.11 0.75 7.59 -51.92 -0.39 0.36 16 9 C -0.13 -0.48 6.03 -25.66 -0.15 -0.63 16 10 C -0.59 -1.66 7.26 37.78 0.27 -1.39 16 11 S 2.40 11.48 6.11 -107.50 -0.66 10.82 16 12 O -0.93 -8.42 18.15 -57.71 -1.05 -9.47 16 13 O -0.93 -7.62 18.15 -57.71 -1.05 -8.67 16 14 C -0.61 -1.65 6.85 38.24 0.26 -1.39 16 15 C 0.06 0.77 4.32 -3.83 -0.02 0.75 16 16 C 0.02 0.37 2.13 -93.41 -0.20 0.17 16 17 H 0.11 1.79 6.34 -51.93 -0.33 1.46 16 18 C 0.25 5.24 13.67 -20.76 -0.28 4.96 16 19 N -0.47 -10.84 18.54 42.15 0.78 -10.06 16 20 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 21 C -0.53 -14.04 9.15 -34.44 -0.32 -14.35 16 22 H 0.07 2.19 7.84 -52.49 -0.41 1.78 16 23 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 24 N -0.90 -26.83 13.96 55.43 0.77 -26.06 16 25 Si 0.88 20.22 27.47 -169.99 -4.67 15.56 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 27 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 28 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 29 H 0.08 1.00 6.37 -51.93 -0.33 0.67 16 30 H 0.08 1.01 5.83 -51.93 -0.30 0.71 16 31 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.11 0.72 7.93 -51.93 -0.41 0.31 16 33 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 34 H 0.40 0.79 8.59 -40.82 -0.35 0.44 16 35 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.14 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.15 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.14 0.06 8.10 -51.93 -0.42 -0.36 16 41 H 0.08 0.97 7.93 -51.92 -0.41 0.56 16 42 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 43 H 0.03 0.54 7.20 -51.93 -0.37 0.16 16 44 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 384.33 15.07 5.79 5.79 Total: -1.00 -40.68 384.33 -8.36 -49.04 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -6.68 Total: -4.59 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -0.39 Total: -4.08 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.26 Total: -47.63 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -2.02 Total: -24.90 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.56 kcal Atomic # 16 Polarization: 11.48 SS G_CDS: -0.66 Total: 10.82 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.68 -8.36 -49.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161830113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.524 kcal (2) G-P(sol) polarization free energy of solvation -40.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds