Wall clock time and date at job start Wed Apr 1 2020 01:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46906 * 110.99574 * 2 1 4 4 C 1.50707 * 109.46827 * 66.04598 * 3 2 1 5 5 O 1.21281 * 119.99900 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99704 * 179.97438 * 4 3 2 7 7 C 1.46500 * 119.99953 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.53663 * 325.36291 * 7 6 4 9 9 C 1.53884 * 109.64717 * 205.00426 * 7 6 4 10 10 C 1.55047 * 106.66405 * 192.99031 * 9 7 6 11 11 S 1.83288 * 102.56602 * 42.40560 * 10 9 7 12 12 O 1.42109 * 109.34906 * 90.18801 * 11 10 9 13 13 O 1.42098 * 109.35599 * 223.38266 * 11 10 9 14 14 C 1.54189 * 109.69271 * 85.72017 * 7 6 4 15 15 C 1.46902 * 111.00404 * 236.05159 * 2 1 3 16 16 C 1.52998 * 109.46831 * 199.86297 * 15 2 1 17 17 H 1.09002 * 109.47417 * 305.13772 * 16 15 2 18 18 C 1.47203 * 109.47490 * 65.14687 * 16 15 2 19 19 N 3.66705 * 123.89361 * 157.44410 * 2 1 3 20 20 C 1.53005 * 109.46555 * 185.14601 * 16 15 2 21 21 C 1.50700 * 109.47103 * 175.00090 * 20 16 15 22 22 H 1.08008 * 119.99913 * 359.97438 * 21 20 16 23 23 C 1.37878 * 120.00470 * 179.97438 * 21 20 16 24 24 N 1.31515 * 119.99461 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00394 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46785 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47159 * 120.00039 * 25 23 21 28 28 H 1.48500 * 109.47180 * 240.00257 * 25 23 21 29 29 H 1.09006 * 109.47598 * 54.65628 * 1 2 3 30 30 H 1.09007 * 109.46996 * 174.64917 * 1 2 3 31 31 H 1.08998 * 109.47766 * 294.65213 * 1 2 3 32 32 H 1.08994 * 109.47499 * 306.05067 * 3 2 1 33 33 H 1.09002 * 109.47097 * 186.04450 * 3 2 1 34 34 H 0.97003 * 120.00420 * 0.02562 * 6 4 3 35 35 H 1.08994 * 110.02826 * 73.67309 * 9 7 6 36 36 H 1.08998 * 110.02513 * 312.30371 * 9 7 6 37 37 H 1.09000 * 110.78892 * 160.68025 * 10 9 7 38 38 H 1.09000 * 110.79091 * 284.14378 * 10 9 7 39 39 H 1.08997 * 110.27610 * 28.80910 * 14 7 6 40 40 H 1.08999 * 110.33787 * 266.63378 * 14 7 6 41 41 H 1.09007 * 109.46649 * 319.86135 * 15 2 1 42 42 H 1.08994 * 109.47280 * 79.85874 * 15 2 1 43 43 H 1.09008 * 109.46714 * 294.99321 * 20 16 15 44 44 H 1.08990 * 109.47867 * 54.99719 * 20 16 15 45 45 H 0.97002 * 119.99609 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6367 2.0472 1.2985 5 8 1.0053 1.4452 2.1411 6 7 2.0185 3.3199 1.5238 7 6 1.6704 3.9765 2.7863 8 1 0.6932 3.6284 3.1209 9 6 1.6347 5.5015 2.5836 10 6 1.5949 6.1371 3.9973 11 16 2.8124 5.1270 4.9230 12 8 4.0990 5.7197 4.8098 13 8 2.2860 4.8128 6.2050 14 6 2.7318 3.6448 3.8544 15 6 1.9955 -0.7659 -1.1376 16 6 3.4448 -1.1667 -0.8554 17 1 4.0288 -0.2768 -0.6205 18 6 3.4838 -2.0949 0.2864 19 7 3.5139 -2.8111 1.1676 20 6 4.0339 -1.8520 -2.0901 21 6 5.4954 -2.1365 -1.8573 22 1 5.9579 -1.8562 -0.9224 23 6 6.2422 -2.7546 -2.8378 24 7 5.6791 -3.0955 -3.9764 25 14 8.0539 -3.1067 -2.5495 26 1 8.4422 -2.6281 -1.1985 27 1 8.2953 -4.5688 -2.6444 28 1 8.8643 -2.4035 -3.5762 29 1 -0.3634 0.5945 -0.8383 30 1 -0.3633 -1.0233 -0.0958 31 1 -0.3634 0.4286 0.9339 32 1 1.5609 1.9275 -0.8308 33 1 3.0796 1.3446 -0.1082 34 1 2.5239 3.8012 0.8500 35 1 0.7436 5.7828 2.0227 36 1 2.5286 5.8285 2.0524 37 1 1.9061 7.1811 3.9610 38 1 0.6015 6.0433 4.4358 39 1 3.6981 3.4646 3.3835 40 1 2.4252 2.7752 4.4358 41 1 1.3922 -1.6621 -1.2826 42 1 1.9568 -0.1524 -2.0377 43 1 3.5061 -2.7881 -2.2726 44 1 3.9244 -1.1985 -2.9555 45 1 6.2045 -3.5300 -4.6663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161830278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:48 Heat of formation + Delta-G solvation = -105.619697 kcal Electronic energy + Delta-G solvation = -27548.184448 eV Core-core repulsion = 23498.991468 eV Total energy + Delta-G solvation = -4049.192980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.04413 -39.10355 -38.13800 -37.79531 -37.07330 -36.79946 -35.42642 -33.99039 -33.42415 -30.73768 -29.21407 -28.90195 -26.28617 -25.75524 -23.61039 -23.16096 -22.15375 -21.39112 -19.82014 -18.58670 -18.49780 -18.09189 -17.89395 -17.53160 -16.96486 -16.70887 -16.53235 -16.34805 -15.75881 -15.51773 -15.49976 -15.03967 -14.89181 -14.77624 -14.36042 -14.21768 -13.90230 -13.73846 -13.50781 -13.36477 -13.25881 -13.18015 -13.16410 -13.02426 -13.01599 -12.75529 -12.64562 -12.61152 -12.46447 -12.31808 -12.18647 -11.82182 -11.76884 -11.37777 -11.34148 -11.14583 -10.70737 -10.53403 -10.16385 -9.17059 -8.18182 -6.25300 -0.94739 1.39189 1.43652 1.52430 1.53016 1.71901 2.04937 2.09608 2.18011 2.42681 2.66197 3.01399 3.10571 3.17952 3.38222 3.39085 3.59633 3.65986 3.92779 3.94161 4.08087 4.10693 4.31983 4.42964 4.45805 4.56836 4.66021 4.67614 4.71364 4.82158 4.82605 4.86483 4.96428 5.00425 5.03257 5.17793 5.46316 5.50394 5.65354 5.81601 6.03178 6.09470 6.24935 6.61835 6.86041 6.96593 7.34196 7.43249 8.92703 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002335 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.506736 B =11989.249188 C =13039.869766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.555 5.555 3 C 0.028 3.972 4 C 0.515 3.485 5 O -0.561 6.561 6 N -0.710 5.710 7 C 0.150 3.850 8 H 0.102 0.898 9 C -0.123 4.123 10 C -0.551 4.551 11 S 2.392 3.608 12 O -0.975 6.975 13 O -0.987 6.987 14 C -0.611 4.611 15 C 0.073 3.927 16 C 0.022 3.978 17 H 0.120 0.880 18 C 0.265 3.735 19 N -0.523 5.523 20 C 0.038 3.962 21 C -0.536 4.536 22 H 0.051 0.949 23 C 0.013 3.987 24 N -0.922 5.922 25 Si 0.944 3.056 26 H -0.271 1.271 27 H -0.288 1.288 28 H -0.271 1.271 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.423 0.577 35 H 0.133 0.867 36 H 0.117 0.883 37 H 0.170 0.830 38 H 0.161 0.839 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.075 0.925 42 H 0.088 0.912 43 H -0.001 1.001 44 H 0.044 0.956 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.837 25.832 6.034 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.280 5.280 3 C -0.103 4.103 4 C 0.302 3.698 5 O -0.438 6.438 6 N -0.365 5.365 7 C 0.043 3.957 8 H 0.120 0.880 9 C -0.162 4.162 10 C -0.685 4.685 11 S 2.579 3.421 12 O -0.972 6.972 13 O -0.984 6.984 14 C -0.742 4.742 15 C -0.055 4.055 16 C 0.000 4.000 17 H 0.138 0.862 18 C -0.051 4.051 19 N -0.200 5.200 20 C 0.000 4.000 21 C -0.574 4.574 22 H 0.070 0.930 23 C -0.186 4.186 24 N -0.562 5.562 25 Si 0.770 3.230 26 H -0.196 1.196 27 H -0.215 1.215 28 H -0.196 1.196 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.261 0.739 35 H 0.151 0.849 36 H 0.135 0.865 37 H 0.187 0.813 38 H 0.179 0.821 39 H 0.163 0.837 40 H 0.145 0.855 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.018 0.982 44 H 0.062 0.938 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.495 24.184 9.082 28.696 hybrid contribution 0.813 -0.468 -1.601 1.856 sum -11.682 23.715 7.481 27.475 Atomic orbital electron populations 1.22445 0.85857 1.01926 1.01749 1.61500 1.09375 1.13009 1.44076 1.22239 1.03758 0.89396 0.94898 1.20973 0.78153 0.81618 0.89082 1.90688 1.40729 1.64641 1.47754 1.45790 1.58189 1.13265 1.19228 1.21396 0.97257 0.93804 0.83214 0.87984 1.22560 1.08880 0.89265 0.95478 1.30416 1.16689 1.13912 1.07479 1.08801 0.77196 0.79390 0.76694 1.93582 1.39925 1.75883 1.87828 1.93562 1.81056 1.84285 1.39539 1.31016 1.09438 1.19721 1.14045 1.22138 0.92498 0.98649 0.92223 1.19275 0.98331 0.94568 0.87843 0.86242 1.29537 0.89959 0.92648 0.92992 1.80983 1.11939 1.12825 1.14283 1.19005 0.93818 0.95483 0.91738 1.21574 0.96244 1.38768 1.00822 0.93026 1.25650 1.02153 0.95607 0.95143 1.70024 1.37574 1.42099 1.06490 0.85711 0.81263 0.77596 0.78390 1.19590 1.21470 1.19614 0.93565 0.92284 0.91147 0.87757 0.86211 0.73878 0.84893 0.86480 0.81256 0.82113 0.83681 0.85510 0.90646 0.89360 0.98221 0.93825 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 9.19 127.69 1.17 1.78 16 2 N -0.55 -13.39 4.13 -927.02 -3.83 -17.22 16 3 C 0.03 0.45 5.27 85.56 0.45 0.90 16 4 C 0.51 9.48 7.57 87.66 0.66 10.14 16 5 O -0.56 -15.75 13.97 -3.03 -0.04 -15.79 16 6 N -0.71 -6.69 5.06 -439.20 -2.22 -8.91 16 7 C 0.15 1.28 2.89 45.69 0.13 1.42 16 8 H 0.10 1.10 7.57 -2.38 -0.02 1.08 16 9 C -0.12 -0.03 5.97 31.59 0.19 0.16 16 10 C -0.55 -0.82 7.31 72.68 0.53 -0.29 16 11 S 2.39 30.25 6.11 -56.49 -0.34 29.91 16 12 O -0.98 -19.65 18.15 -127.49 -2.31 -21.96 16 13 O -0.99 -22.05 18.15 -127.49 -2.31 -24.36 16 14 C -0.61 -7.68 6.92 72.38 0.50 -7.18 16 15 C 0.07 1.87 4.36 86.30 0.38 2.25 16 16 C 0.02 0.73 2.27 -12.60 -0.03 0.70 16 17 H 0.12 3.52 6.67 -2.39 -0.02 3.50 16 18 C 0.26 11.08 13.67 89.44 1.22 12.30 16 19 N -0.52 -24.60 18.54 20.01 0.37 -24.23 16 20 C 0.04 1.67 4.42 29.85 0.13 1.80 16 21 C -0.54 -27.51 8.60 25.60 0.22 -27.29 16 22 H 0.05 2.66 7.59 -2.91 -0.02 2.63 16 23 C 0.01 0.72 5.46 84.65 0.46 1.18 16 24 N -0.92 -51.49 13.29 21.45 0.28 -51.21 16 25 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 29 H 0.05 0.75 8.07 -2.38 -0.02 0.73 16 30 H 0.06 1.35 7.85 -2.38 -0.02 1.33 16 31 H 0.07 1.75 5.99 -2.39 -0.01 1.74 16 32 H 0.10 0.97 8.07 -2.39 -0.02 0.95 16 33 H 0.12 1.77 6.58 -2.39 -0.02 1.75 16 34 H 0.42 0.89 8.60 -92.71 -0.80 0.10 16 35 H 0.13 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H 0.12 -0.37 8.12 -2.39 -0.02 -0.39 16 37 H 0.17 -0.43 8.14 -2.39 -0.02 -0.45 16 38 H 0.16 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.14 1.73 8.07 -2.39 -0.02 1.71 16 40 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.08 2.05 7.74 -2.38 -0.02 2.03 16 42 H 0.09 1.74 8.00 -2.39 -0.02 1.72 16 43 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 44 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 Total: -1.00 -89.02 388.19 -2.14 -91.16 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: 0.22 Total: -0.02 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: 6.02 Total: -2.11 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -5.40 Total: -101.56 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -4.67 Total: -62.12 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Atomic # 16 Polarization: 30.25 SS G_CDS: -0.34 Total: 29.91 kcal Total: -89.02 -2.14 -91.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161830278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.457 kcal (2) G-P(sol) polarization free energy of solvation -89.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds