Wall clock time and date at job start Wed Apr 1 2020 02:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46498 * 120.00231 * 2 1 4 4 C 1.34773 * 119.99884 * 179.97438 * 2 1 3 5 5 O 1.21278 * 120.00209 * 0.02562 * 4 2 1 6 6 C 1.50703 * 119.99939 * 179.97438 * 4 2 1 7 7 N 1.46497 * 109.47039 * 180.02562 * 6 4 2 8 8 C 1.34382 * 126.76739 * 125.00075 * 7 6 4 9 9 N 1.30856 * 108.20561 * 180.02562 * 8 7 6 10 10 C 1.33644 * 109.78019 * 0.02562 * 9 8 7 11 11 N 1.39787 * 125.60333 * 179.97438 * 10 9 8 12 12 C 1.34777 * 120.00173 * 0.02631 * 11 10 9 13 13 O 1.21556 * 119.99923 * 0.02562 * 12 11 10 14 14 C 1.47850 * 119.99931 * 179.97438 * 12 11 10 15 15 C 1.39936 * 120.02688 * 359.72149 * 14 12 11 16 16 C 1.38329 * 120.35352 * 179.74223 * 15 14 12 17 17 C 1.37753 * 120.41347 * 0.56498 * 16 15 14 18 18 C 1.40745 * 120.04380 * 359.69006 * 17 16 15 19 19 C 1.41446 * 120.17747 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99609 * 24.44827 * 19 18 17 21 21 C 1.39934 * 120.00135 * 204.44448 * 19 18 17 22 22 N 1.30831 * 119.99972 * 17.87645 * 21 19 18 23 23 Si 1.86801 * 119.99917 * 197.88405 * 21 19 18 24 24 H 1.48497 * 109.47148 * 59.99616 * 23 21 19 25 25 H 1.48494 * 109.47007 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46729 * 299.99665 * 23 21 19 27 27 C 1.39008 * 120.02709 * 180.02562 * 14 12 11 28 28 N 1.31181 * 108.78863 * 359.97438 * 10 9 8 29 29 H 1.08991 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47093 * 300.00339 * 1 2 3 31 31 H 1.09003 * 109.46604 * 59.99784 * 1 2 3 32 32 H 1.09002 * 109.47466 * 269.99776 * 3 2 1 33 33 H 1.09007 * 109.47271 * 29.99754 * 3 2 1 34 34 H 1.09003 * 109.47574 * 149.99408 * 3 2 1 35 35 H 1.08998 * 109.46823 * 60.00285 * 6 4 2 36 36 H 1.09002 * 109.47273 * 300.00170 * 6 4 2 37 37 H 1.07999 * 125.89377 * 0.02562 * 8 7 6 38 38 H 0.97006 * 119.99629 * 180.02562 * 11 10 9 39 39 H 1.07999 * 119.82202 * 0.02562 * 15 14 12 40 40 H 1.08004 * 119.78750 * 180.28119 * 16 15 14 41 41 H 1.08006 * 119.97703 * 179.72500 * 17 16 15 42 42 H 0.96997 * 120.00065 * 179.97438 * 22 21 19 43 43 H 1.08008 * 120.20290 * 359.95475 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5325 -2.2175 0.0005 6 6 3.6459 -1.1672 -0.0001 7 7 4.1342 -2.5484 0.0001 8 6 4.9841 -3.1012 -0.8820 9 7 5.1720 -4.3504 -0.5408 10 6 4.4586 -4.6327 0.5535 11 7 4.4154 -5.8715 1.1997 12 6 5.1355 -6.9060 0.7224 13 8 5.8229 -6.7617 -0.2697 14 6 5.0903 -8.2160 1.4063 15 6 4.3045 -8.3809 2.5525 16 6 4.2531 -9.6050 3.1946 17 6 4.9833 -10.6725 2.7203 18 6 5.7834 -10.5243 1.5719 19 6 6.5339 -11.6187 1.0822 20 1 6.2242 -12.6289 1.3055 21 6 7.6776 -11.3924 0.3084 22 7 8.2548 -10.2183 0.3218 23 14 8.3802 -12.7665 -0.7440 24 1 7.3605 -13.2053 -1.7304 25 1 9.5833 -12.2744 -1.4620 26 1 8.7548 -13.9122 0.1235 27 6 5.8331 -9.2833 0.9149 28 7 3.8056 -3.5561 0.9214 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 2.3793 1.5834 -1.0277 33 1 1.6085 2.0284 0.5138 34 1 3.1500 1.1384 0.5139 35 1 4.0095 -0.6528 0.8895 36 1 4.0089 -0.6539 -0.8905 37 1 5.4343 -2.6007 -1.7265 38 1 3.8672 -5.9865 1.9916 39 1 3.7317 -7.5491 2.9351 40 1 3.6400 -9.7233 4.0759 41 1 4.9413 -11.6239 3.2298 42 1 9.0478 -10.0616 -0.2143 43 1 6.4443 -9.1595 0.0330 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173767974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:52 Heat of formation + Delta-G solvation = 48.736699 kcal Electronic energy + Delta-G solvation = -28304.576034 eV Core-core repulsion = 24158.925250 eV Total energy + Delta-G solvation = -4145.650785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.20593 -41.06329 -40.70965 -38.86399 -36.64277 -36.26876 -35.59417 -34.48921 -32.34084 -31.79275 -31.30369 -29.97027 -28.24262 -27.26635 -26.45289 -25.17349 -23.44130 -22.91999 -22.40952 -21.04800 -20.50499 -19.55415 -18.91679 -18.31199 -17.97851 -17.38722 -17.08581 -16.98633 -16.76033 -16.49756 -16.25268 -15.75274 -15.58944 -15.36719 -15.05964 -14.67732 -14.51727 -14.42048 -14.30310 -13.69011 -13.50169 -13.34766 -13.33082 -13.00579 -12.97682 -12.81744 -12.79553 -12.55067 -12.22179 -12.14588 -11.94316 -11.54282 -11.23485 -11.19585 -11.06262 -10.81770 -10.66841 -9.79198 -9.72683 -9.49210 -9.41283 -8.66459 -6.38162 0.17203 0.62812 0.98324 1.00372 1.37471 1.45112 1.48622 1.51861 1.70607 1.82464 2.12527 2.19583 2.30500 2.78466 3.26644 3.38552 3.67691 3.69347 3.90547 4.06305 4.18737 4.32015 4.40424 4.42291 4.44327 4.52897 4.57119 4.79977 4.87852 4.91159 4.99337 5.06679 5.14566 5.17148 5.29227 5.41043 5.47603 5.50334 5.74230 5.85292 5.90993 6.02551 6.13817 6.24811 6.28057 6.57285 6.86622 6.92352 7.02936 7.05825 7.24978 8.30344 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.022650 B = 0.002094 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.930893 B =13366.986893 C =14225.663699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.617 5.617 3 C 0.063 3.937 4 C 0.488 3.512 5 O -0.574 6.574 6 C 0.114 3.886 7 N -0.369 5.369 8 C 0.282 3.718 9 N -0.574 5.574 10 C 0.428 3.572 11 N -0.621 5.621 12 C 0.565 3.435 13 O -0.524 6.524 14 C -0.132 4.132 15 C -0.203 4.203 16 C -0.092 4.092 17 C -0.213 4.213 18 C 0.068 3.932 19 C -0.494 4.494 20 H 0.087 0.913 21 C 0.028 3.972 22 N -0.823 5.823 23 Si 0.985 3.015 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.251 1.251 27 C -0.125 4.125 28 N -0.336 5.336 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.188 0.812 37 H 0.280 0.720 38 H 0.430 0.570 39 H 0.131 0.869 40 H 0.141 0.859 41 H 0.113 0.887 42 H 0.288 0.712 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.481 27.668 -1.167 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.352 5.352 3 C -0.078 4.078 4 C 0.275 3.725 5 O -0.452 6.452 6 C -0.010 4.010 7 N -0.162 5.162 8 C -0.014 4.014 9 N -0.304 5.304 10 C 0.059 3.941 11 N -0.276 5.276 12 C 0.354 3.646 13 O -0.397 6.397 14 C -0.136 4.136 15 C -0.222 4.222 16 C -0.110 4.110 17 C -0.233 4.233 18 C 0.066 3.934 19 C -0.523 4.523 20 H 0.105 0.895 21 C -0.187 4.187 22 N -0.448 5.448 23 Si 0.805 3.195 24 H -0.186 1.186 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.145 4.145 28 N -0.172 5.172 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.165 0.835 36 H 0.205 0.795 37 H 0.295 0.705 38 H 0.271 0.729 39 H 0.149 0.851 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.372 27.191 -1.503 28.800 hybrid contribution 0.048 -0.529 -0.202 0.568 sum -9.324 26.662 -1.705 28.297 Atomic orbital electron populations 1.21750 0.78865 1.02787 1.03150 1.47869 1.07711 1.06745 1.72840 1.22252 0.97979 0.83365 1.04180 1.21183 0.91068 0.83823 0.76417 1.90818 1.70667 1.33180 1.50555 1.22175 0.90816 0.77478 1.10537 1.49961 1.35269 1.10335 1.20619 1.27146 0.90476 0.87954 0.95860 1.70564 1.28519 1.16057 1.15308 1.20588 0.94029 0.87798 0.91715 1.42514 1.48424 1.05527 1.31179 1.18969 0.78022 0.84110 0.83507 1.90775 1.39623 1.83378 1.25925 1.19515 1.03384 0.91501 0.99196 1.20840 1.04622 0.98868 0.97903 1.20912 0.98413 0.92227 0.99422 1.21432 1.04467 0.99546 0.97809 1.17944 0.91894 0.92658 0.90945 1.19851 1.08296 0.94466 1.29678 0.89456 1.26903 0.96415 0.99161 0.96254 1.69883 1.16869 1.25235 1.32833 0.85213 0.77816 0.78082 0.78406 1.18561 1.19656 1.17460 1.21435 0.99506 0.93206 1.00373 1.78146 1.25550 0.96723 1.16799 0.92890 0.90336 0.90076 0.90005 0.89176 0.88726 0.83514 0.79501 0.70526 0.72895 0.85128 0.84123 0.86866 0.90179 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.84 10.69 127.77 1.37 2.20 16 2 N -0.62 -6.33 3.27 -871.88 -2.85 -9.18 16 3 C 0.06 -0.04 10.29 127.77 1.31 1.27 16 4 C 0.49 8.84 7.71 87.66 0.68 9.51 16 5 O -0.57 -18.26 15.06 -3.02 -0.05 -18.31 16 6 C 0.11 1.18 5.58 85.63 0.48 1.66 16 7 N -0.37 -8.74 3.41 -355.83 -1.21 -9.95 16 8 C 0.28 6.87 12.61 180.37 2.28 9.14 16 9 N -0.57 -22.53 9.37 -201.17 -1.88 -24.41 16 10 C 0.43 17.31 8.81 260.83 2.30 19.61 16 11 N -0.62 -25.85 5.38 -315.49 -1.70 -27.55 16 12 C 0.56 28.15 7.74 86.79 0.67 28.82 16 13 O -0.52 -29.91 15.00 -3.89 -0.06 -29.97 16 14 C -0.13 -6.71 5.87 -20.14 -0.12 -6.83 16 15 C -0.20 -8.60 9.55 22.70 0.22 -8.39 16 16 C -0.09 -3.81 10.01 22.18 0.22 -3.58 16 17 C -0.21 -10.18 9.78 22.77 0.22 -9.96 16 18 C 0.07 3.78 5.57 -21.32 -0.12 3.67 16 19 C -0.49 -27.29 9.05 23.47 0.21 -27.07 16 20 H 0.09 4.51 7.91 -2.91 -0.02 4.49 16 21 C 0.03 1.49 5.14 85.25 0.44 1.93 16 22 N -0.82 -46.85 10.95 21.82 0.24 -46.61 16 23 Si 0.98 40.35 29.60 68.60 2.03 42.38 16 24 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 25 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 26 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 27 C -0.12 -7.19 8.24 23.01 0.19 -7.00 16 28 N -0.34 -11.70 11.83 -58.93 -0.70 -12.39 16 29 H 0.05 0.98 6.90 -2.39 -0.02 0.96 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 -0.30 8.14 -2.39 -0.02 -0.32 16 33 H 0.09 -0.23 8.07 -2.38 -0.02 -0.25 16 34 H 0.09 -0.42 6.44 -2.39 -0.02 -0.44 16 35 H 0.15 0.69 7.40 -2.39 -0.02 0.67 16 36 H 0.19 -0.28 8.05 -2.39 -0.02 -0.30 16 37 H 0.28 2.75 8.06 -2.91 -0.02 2.72 16 38 H 0.43 15.19 6.84 -92.70 -0.63 14.56 16 39 H 0.13 4.44 6.38 -2.91 -0.02 4.42 16 40 H 0.14 4.56 8.06 -2.91 -0.02 4.54 16 41 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 42 H 0.29 15.13 8.30 -92.71 -0.77 14.36 16 43 H 0.10 6.51 5.74 -2.91 -0.02 6.50 16 Total: -1.00 -96.50 372.45 4.60 -91.90 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.44 Total: 29.13 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 10.34 Total: 14.98 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -8.11 Total: -130.10 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -0.10 Total: -48.28 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -96.50 4.60 -91.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173767974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.632 kcal (2) G-P(sol) polarization free energy of solvation -96.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds