Wall clock time and date at job start Wed Apr 1 2020 01:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 O 1.21282 * 120.00187 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00167 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.64562 * 325.70105 * 7 6 4 9 9 C 1.53885 * 109.64518 * 86.12948 * 7 6 4 10 10 C 1.54973 * 106.65556 * 167.15124 * 9 7 6 11 11 S 1.83288 * 102.48289 * 317.38136 * 10 9 7 12 12 O 1.42096 * 109.35195 * 269.90446 * 11 10 9 13 13 O 1.42101 * 109.47548 * 136.73763 * 11 10 9 14 14 C 1.54167 * 109.64889 * 205.26829 * 7 6 4 15 15 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 16 16 C 1.53000 * 109.47048 * 293.95182 * 15 2 1 17 17 H 1.08993 * 109.47179 * 54.99982 * 16 15 2 18 18 C 1.47198 * 109.47159 * 295.00214 * 16 15 2 19 19 N 3.66497 * 112.02758 * 160.58753 * 2 1 3 20 20 C 1.53005 * 109.46706 * 175.00233 * 16 15 2 21 21 C 1.50699 * 109.46806 * 185.00054 * 20 16 15 22 22 H 1.08006 * 120.00321 * 359.97438 * 21 20 16 23 23 C 1.37872 * 120.00153 * 180.02562 * 21 20 16 24 24 N 1.31514 * 120.00101 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00302 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47157 * 59.99622 * 25 23 21 27 27 H 1.48500 * 109.47505 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46905 * 299.99957 * 25 23 21 29 29 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 30 30 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 31 31 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 32 32 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 33 33 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 34 34 H 0.97002 * 119.99460 * 359.97438 * 6 4 3 35 35 H 1.08997 * 110.02371 * 286.31993 * 9 7 6 36 36 H 1.09000 * 110.02653 * 47.74350 * 9 7 6 37 37 H 1.09005 * 110.75544 * 199.17693 * 10 9 7 38 38 H 1.09000 * 111.07502 * 75.73479 * 10 9 7 39 39 H 1.09003 * 110.31539 * 331.14518 * 14 7 6 40 40 H 1.08998 * 110.31599 * 93.23254 * 14 7 6 41 41 H 1.08992 * 109.47062 * 53.95734 * 15 2 1 42 42 H 1.09003 * 109.46753 * 173.95421 * 15 2 1 43 43 H 1.08995 * 109.46995 * 304.99643 * 20 16 15 44 44 H 1.08996 * 109.46819 * 65.00191 * 20 16 15 45 45 H 0.96992 * 120.00362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0048 1.4456 2.1408 6 7 2.0188 3.3199 1.5238 7 6 1.6699 3.9769 2.7858 8 1 0.6952 3.6257 3.1245 9 6 2.7343 3.6535 3.8490 10 6 2.4901 4.6247 5.0317 11 16 2.1653 6.2141 4.1787 12 8 3.3908 6.9098 3.9966 13 8 1.0655 6.8676 4.7973 14 6 1.6280 5.5043 2.5808 15 6 1.9955 -0.7660 -1.1376 16 6 1.6315 -2.2426 -0.9703 17 1 0.5533 -2.3389 -0.8432 18 6 2.3156 -2.7854 0.2147 19 7 2.8436 -3.2043 1.1292 20 6 2.0701 -3.0198 -2.2131 21 6 1.6032 -4.4484 -2.1027 22 1 1.0495 -4.7700 -1.2330 23 6 1.8838 -5.3453 -3.1116 24 7 2.5585 -4.9540 -4.1705 25 14 1.3058 -7.1163 -2.9745 26 1 -0.1751 -7.1469 -2.8690 27 1 1.7313 -7.8708 -4.1807 28 1 1.9012 -7.7391 -1.7650 29 1 -0.3632 -1.0253 0.0709 30 1 -0.3634 0.5739 0.8525 31 1 -0.3633 0.4512 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5247 3.8008 0.8502 35 1 2.6241 2.6229 4.1861 36 1 3.7318 3.8075 3.4374 37 1 3.3771 4.6976 5.6611 38 1 1.6251 4.3170 5.6193 39 1 2.3138 5.7984 1.7863 40 1 0.6142 5.8266 2.3434 41 1 1.5612 -0.3872 -2.0627 42 1 3.0798 -0.6611 -1.1756 43 1 1.6331 -2.5624 -3.1007 44 1 3.1570 -2.9977 -2.2906 45 1 2.7556 -5.5848 -4.8804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245749052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:59 Heat of formation + Delta-G solvation = -71.863060 kcal Electronic energy + Delta-G solvation = -27184.744533 eV Core-core repulsion = 23137.015350 eV Total energy + Delta-G solvation = -4047.729182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -40.38655 -38.13785 -37.59374 -37.02101 -36.53637 -35.43208 -33.60562 -33.48398 -31.73387 -30.37176 -28.37249 -27.33232 -25.63277 -24.72143 -22.46659 -21.74940 -21.43032 -20.80949 -19.40245 -17.82284 -17.47656 -17.02727 -16.69668 -16.50115 -16.28665 -16.07511 -15.88294 -15.08285 -14.87265 -14.64583 -14.57393 -14.30830 -14.28276 -13.54165 -13.24065 -13.04439 -12.86176 -12.84009 -12.78104 -12.64911 -12.56231 -12.38007 -12.04262 -11.94006 -11.79585 -11.63342 -11.43861 -11.41099 -11.25586 -11.06269 -10.93272 -10.70491 -10.58265 -10.20361 -10.00429 -9.60824 -9.55069 -9.25658 -8.47431 -8.29275 -6.11687 -4.14706 -0.58086 1.87149 2.34346 2.62327 2.97276 3.30216 3.34316 3.38447 3.42937 3.62979 3.73805 3.84325 3.93108 4.00623 4.04359 4.17028 4.33906 4.39983 4.50698 4.78451 4.87546 4.91345 4.97871 5.06116 5.08705 5.26565 5.27740 5.36134 5.40840 5.49518 5.68114 5.72498 5.89136 5.93052 6.16313 6.33790 6.46624 6.84622 7.06203 7.12358 7.38797 7.49604 7.83594 7.92047 8.21053 8.60223 8.89765 9.50849 10.99145 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.001752 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.484824 B =15980.744847 C =16165.682599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.529 5.529 3 C 0.036 3.964 4 C 0.516 3.484 5 O -0.510 6.510 6 N -0.729 5.729 7 C 0.158 3.842 8 H 0.111 0.889 9 C -0.138 4.138 10 C -0.582 4.582 11 S 2.396 3.604 12 O -0.932 6.932 13 O -0.934 6.934 14 C -0.611 4.611 15 C 0.063 3.937 16 C 0.011 3.989 17 H 0.102 0.898 18 C 0.255 3.745 19 N -0.478 5.478 20 C 0.032 3.968 21 C -0.526 4.526 22 H 0.056 0.944 23 C 0.063 3.937 24 N -0.892 5.892 25 Si 0.892 3.108 26 H -0.275 1.275 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.024 0.976 32 H 0.106 0.894 33 H 0.066 0.934 34 H 0.404 0.596 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.037 0.963 44 H 0.026 0.974 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.642 25.419 10.220 27.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.253 5.253 3 C -0.095 4.095 4 C 0.302 3.698 5 O -0.383 6.383 6 N -0.384 5.384 7 C 0.051 3.949 8 H 0.129 0.871 9 C -0.177 4.177 10 C -0.713 4.713 11 S 2.577 3.423 12 O -0.929 6.929 13 O -0.931 6.931 14 C -0.739 4.739 15 C -0.066 4.066 16 C -0.011 4.011 17 H 0.119 0.881 18 C -0.062 4.062 19 N -0.154 5.154 20 C -0.006 4.006 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.140 4.140 24 N -0.531 5.531 25 Si 0.720 3.280 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.202 1.202 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.042 0.958 32 H 0.124 0.876 33 H 0.084 0.916 34 H 0.239 0.761 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.074 0.926 42 H 0.099 0.901 43 H 0.055 0.945 44 H 0.044 0.956 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.018 24.979 12.763 28.069 hybrid contribution -0.529 -1.066 -1.774 2.136 sum -1.546 23.913 10.989 26.362 Atomic orbital electron populations 1.22621 0.86440 1.03573 1.00634 1.61713 1.09019 1.10358 1.44183 1.21956 1.02492 0.91076 0.93969 1.20826 0.78767 0.80760 0.89452 1.90715 1.38021 1.63307 1.46255 1.46024 1.59281 1.14361 1.18720 1.21204 1.00642 0.87688 0.85386 0.87073 1.22684 1.00355 1.02554 0.92150 1.30568 1.12579 1.19117 1.08989 1.08944 0.75768 0.78494 0.79045 1.93644 1.44097 1.70112 1.85090 1.93638 1.53726 1.72179 1.73582 1.30942 1.13981 1.05865 1.23132 1.22306 1.00731 0.92633 0.90885 1.19235 0.99405 0.92159 0.90290 0.88075 1.28810 0.92787 0.91561 0.93046 1.80983 1.10682 1.10836 1.12940 1.19166 0.97696 0.94405 0.89359 1.21098 1.36073 0.94477 1.04791 0.92534 1.24947 0.94918 0.98848 0.95246 1.69920 1.39405 1.35399 1.08356 0.86646 0.79256 0.84626 0.77506 1.20054 1.21206 1.20208 0.90533 0.90094 0.95765 0.87601 0.91572 0.76090 0.87405 0.88947 0.83991 0.84004 0.83785 0.83510 0.92556 0.90128 0.94463 0.95558 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 8.97 60.07 0.54 0.72 16 2 N -0.53 -6.81 4.20 -244.37 -1.03 -7.83 16 3 C 0.04 0.33 5.45 -4.98 -0.03 0.30 16 4 C 0.52 4.89 7.50 -10.98 -0.08 4.81 16 5 O -0.51 -6.93 13.99 5.56 0.08 -6.85 16 6 N -0.73 -4.03 5.09 -52.77 -0.27 -4.30 16 7 C 0.16 0.77 2.89 -66.86 -0.19 0.58 16 8 H 0.11 0.65 7.57 -51.93 -0.39 0.26 16 9 C -0.14 -0.66 6.07 -25.23 -0.15 -0.81 16 10 C -0.58 -2.01 7.31 38.20 0.28 -1.73 16 11 S 2.40 11.71 6.10 -107.50 -0.66 11.05 16 12 O -0.93 -7.88 18.14 -57.73 -1.05 -8.93 16 13 O -0.93 -8.15 18.15 -57.73 -1.05 -9.20 16 14 C -0.61 -1.68 6.92 37.77 0.26 -1.42 16 15 C 0.06 0.86 4.32 -3.82 -0.02 0.85 16 16 C 0.01 0.20 2.13 -93.41 -0.20 0.00 16 17 H 0.10 1.74 6.33 -51.93 -0.33 1.42 16 18 C 0.25 5.35 13.67 -20.76 -0.28 5.07 16 19 N -0.48 -10.99 18.54 42.16 0.78 -10.20 16 20 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 21 C -0.53 -13.84 8.60 -34.44 -0.30 -14.13 16 22 H 0.06 1.49 7.59 -52.48 -0.40 1.09 16 23 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 24 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 25 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H 0.08 1.01 6.37 -51.93 -0.33 0.68 16 30 H 0.08 1.04 5.82 -51.93 -0.30 0.74 16 31 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.11 0.79 7.93 -51.93 -0.41 0.38 16 33 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.40 1.02 8.37 -40.82 -0.34 0.68 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.14 0.15 7.77 -51.93 -0.40 -0.26 16 40 H 0.15 0.26 8.14 -51.93 -0.42 -0.17 16 41 H 0.06 0.69 8.12 -51.93 -0.42 0.26 16 42 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -39.03 387.44 -8.71 -47.74 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -6.68 Total: -5.50 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.39 Total: -3.57 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.22 Total: -46.73 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -2.02 Total: -24.97 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 11.71 SS G_CDS: -0.66 Total: 11.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.03 -8.71 -47.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245749052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.121 kcal (2) G-P(sol) polarization free energy of solvation -39.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds