Wall clock time and date at job start Wed Apr 1 2020 01:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 O 1.21282 * 120.00187 * 359.97438 * 4 3 2 6 6 N 1.34778 * 120.00069 * 179.97438 * 4 3 2 7 7 C 1.46495 * 120.00167 * 179.97438 * 6 4 3 8 8 H 1.08998 * 109.64562 * 325.70105 * 7 6 4 9 9 C 1.53885 * 109.64518 * 86.12948 * 7 6 4 10 10 C 1.54973 * 106.65556 * 167.15124 * 9 7 6 11 11 S 1.83288 * 102.48289 * 317.38136 * 10 9 7 12 12 O 1.42096 * 109.35195 * 269.90446 * 11 10 9 13 13 O 1.42101 * 109.47548 * 136.73763 * 11 10 9 14 14 C 1.54167 * 109.64889 * 205.26829 * 7 6 4 15 15 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 16 16 C 1.53000 * 109.47048 * 293.95182 * 15 2 1 17 17 H 1.08993 * 109.47179 * 54.99982 * 16 15 2 18 18 C 1.47198 * 109.47159 * 295.00214 * 16 15 2 19 19 N 3.66497 * 112.02758 * 160.58753 * 2 1 3 20 20 C 1.53005 * 109.46706 * 175.00233 * 16 15 2 21 21 C 1.50699 * 109.46806 * 185.00054 * 20 16 15 22 22 H 1.08006 * 120.00321 * 359.97438 * 21 20 16 23 23 C 1.37872 * 120.00153 * 180.02562 * 21 20 16 24 24 N 1.31514 * 120.00101 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00302 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47157 * 59.99622 * 25 23 21 27 27 H 1.48500 * 109.47505 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.46905 * 299.99957 * 25 23 21 29 29 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 30 30 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 31 31 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 32 32 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 33 33 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 34 34 H 0.97002 * 119.99460 * 359.97438 * 6 4 3 35 35 H 1.08997 * 110.02371 * 286.31993 * 9 7 6 36 36 H 1.09000 * 110.02653 * 47.74350 * 9 7 6 37 37 H 1.09005 * 110.75544 * 199.17693 * 10 9 7 38 38 H 1.09000 * 111.07502 * 75.73479 * 10 9 7 39 39 H 1.09003 * 110.31539 * 331.14518 * 14 7 6 40 40 H 1.08998 * 110.31599 * 93.23254 * 14 7 6 41 41 H 1.08992 * 109.47062 * 53.95734 * 15 2 1 42 42 H 1.09003 * 109.46753 * 173.95421 * 15 2 1 43 43 H 1.08995 * 109.46995 * 304.99643 * 20 16 15 44 44 H 1.08996 * 109.46819 * 65.00191 * 20 16 15 45 45 H 0.96992 * 120.00362 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0048 1.4456 2.1408 6 7 2.0188 3.3199 1.5238 7 6 1.6699 3.9769 2.7858 8 1 0.6952 3.6257 3.1245 9 6 2.7343 3.6535 3.8490 10 6 2.4901 4.6247 5.0317 11 16 2.1653 6.2141 4.1787 12 8 3.3908 6.9098 3.9966 13 8 1.0655 6.8676 4.7973 14 6 1.6280 5.5043 2.5808 15 6 1.9955 -0.7660 -1.1376 16 6 1.6315 -2.2426 -0.9703 17 1 0.5533 -2.3389 -0.8432 18 6 2.3156 -2.7854 0.2147 19 7 2.8436 -3.2043 1.1292 20 6 2.0701 -3.0198 -2.2131 21 6 1.6032 -4.4484 -2.1027 22 1 1.0495 -4.7700 -1.2330 23 6 1.8838 -5.3453 -3.1116 24 7 2.5585 -4.9540 -4.1705 25 14 1.3058 -7.1163 -2.9745 26 1 -0.1751 -7.1469 -2.8690 27 1 1.7313 -7.8708 -4.1807 28 1 1.9012 -7.7391 -1.7650 29 1 -0.3632 -1.0253 0.0709 30 1 -0.3634 0.5739 0.8525 31 1 -0.3633 0.4512 -0.9233 32 1 3.0797 1.3444 -0.1082 33 1 1.5611 1.9274 -0.8309 34 1 2.5247 3.8008 0.8502 35 1 2.6241 2.6229 4.1861 36 1 3.7318 3.8075 3.4374 37 1 3.3771 4.6976 5.6611 38 1 1.6251 4.3170 5.6193 39 1 2.3138 5.7984 1.7863 40 1 0.6142 5.8266 2.3434 41 1 1.5612 -0.3872 -2.0627 42 1 3.0798 -0.6611 -1.1756 43 1 1.6331 -2.5624 -3.1007 44 1 3.1570 -2.9977 -2.2906 45 1 2.7556 -5.5848 -4.8804 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245749052.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:54:57 Heat of formation + Delta-G solvation = -103.521003 kcal Electronic energy + Delta-G solvation = -27186.117324 eV Core-core repulsion = 23137.015350 eV Total energy + Delta-G solvation = -4049.101974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.06575 -39.15435 -38.14341 -37.81023 -37.08974 -36.76980 -35.41990 -34.06200 -33.40265 -30.80530 -29.30832 -28.62677 -26.57085 -25.61256 -23.77847 -23.01330 -22.13729 -21.47277 -19.83469 -18.65030 -18.32187 -18.10476 -17.91029 -17.43454 -16.97365 -16.74254 -16.60772 -16.44555 -15.87315 -15.55623 -15.44218 -14.99705 -14.92069 -14.75255 -14.46010 -14.20172 -13.86633 -13.69325 -13.55379 -13.44519 -13.24984 -13.19481 -13.14123 -13.05893 -13.00248 -12.72504 -12.64420 -12.54743 -12.42164 -12.38450 -12.20482 -11.87725 -11.75925 -11.38483 -11.34814 -11.19233 -10.70185 -10.53037 -10.16304 -9.17232 -8.18311 -6.25640 -0.97031 1.41382 1.43128 1.48656 1.50015 1.67839 2.05268 2.13273 2.17338 2.42610 2.59064 3.01785 3.10564 3.17356 3.27853 3.38590 3.59108 3.66071 3.90457 3.95892 3.99333 4.09434 4.34721 4.45123 4.47069 4.51027 4.62062 4.64955 4.71756 4.79097 4.83200 4.86230 4.90145 5.00562 5.01772 5.24060 5.44262 5.48980 5.65066 5.80879 6.02324 6.10124 6.24487 6.59342 6.84906 6.96021 7.31814 7.42457 8.92070 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.035368 B = 0.001752 C = 0.001732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.484824 B =15980.744847 C =16165.682599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.553 5.553 3 C 0.034 3.966 4 C 0.515 3.485 5 O -0.559 6.559 6 N -0.711 5.711 7 C 0.151 3.849 8 H 0.102 0.898 9 C -0.140 4.140 10 C -0.570 4.570 11 S 2.407 3.593 12 O -0.970 6.970 13 O -0.977 6.977 14 C -0.588 4.588 15 C 0.075 3.925 16 C 0.019 3.981 17 H 0.112 0.888 18 C 0.266 3.734 19 N -0.518 5.518 20 C 0.040 3.960 21 C -0.540 4.540 22 H 0.050 0.950 23 C 0.013 3.987 24 N -0.920 5.920 25 Si 0.945 3.055 26 H -0.264 1.264 27 H -0.281 1.281 28 H -0.283 1.283 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.123 0.877 33 H 0.099 0.901 34 H 0.422 0.578 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.170 0.830 40 H 0.163 0.837 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.039 0.961 44 H 0.005 0.995 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 26.628 9.318 28.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.277 5.277 3 C -0.096 4.096 4 C 0.302 3.698 5 O -0.436 6.436 6 N -0.366 5.366 7 C 0.044 3.956 8 H 0.120 0.880 9 C -0.180 4.180 10 C -0.702 4.702 11 S 2.593 3.407 12 O -0.967 6.967 13 O -0.974 6.974 14 C -0.718 4.718 15 C -0.054 4.054 16 C -0.003 4.003 17 H 0.130 0.870 18 C -0.050 4.050 19 N -0.196 5.196 20 C 0.001 3.999 21 C -0.578 4.578 22 H 0.068 0.932 23 C -0.186 4.186 24 N -0.560 5.560 25 Si 0.771 3.229 26 H -0.189 1.189 27 H -0.206 1.206 28 H -0.209 1.209 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.063 0.937 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.260 0.740 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.188 0.812 40 H 0.181 0.819 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.232 26.264 11.865 28.846 hybrid contribution -0.451 -1.450 -1.486 2.125 sum -1.684 24.814 10.378 26.950 Atomic orbital electron populations 1.22534 0.86395 1.02558 1.01329 1.61553 1.09325 1.12941 1.43917 1.22092 1.03596 0.89232 0.94716 1.20970 0.78192 0.81543 0.89142 1.90706 1.40462 1.64700 1.47707 1.45841 1.58279 1.13252 1.19226 1.21276 1.00320 0.88799 0.85177 0.88038 1.22687 1.01058 1.01645 0.92596 1.30497 1.13687 1.17140 1.08866 1.08369 0.74218 0.78536 0.79531 1.93593 1.45417 1.71856 1.85871 1.93582 1.54809 1.73961 1.75084 1.30765 1.15613 1.03663 1.21790 1.22122 1.01308 0.89644 0.92315 1.19246 0.99522 0.94597 0.86961 0.87049 1.29422 0.91961 0.90539 0.93093 1.80977 1.12096 1.12180 1.14321 1.18981 0.96136 0.93298 0.91453 1.21520 1.35506 0.96554 1.04239 0.93204 1.25658 0.95323 1.02349 0.95254 1.70001 1.40552 1.36499 1.08966 0.85805 0.79324 0.80616 0.77157 1.18906 1.20619 1.20920 0.92203 0.90880 0.93692 0.85872 0.88351 0.73999 0.89260 0.87627 0.82689 0.83083 0.81208 0.81871 0.90220 0.89551 0.94262 0.97689 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 8.97 127.69 1.15 1.59 16 2 N -0.55 -13.03 4.20 -927.05 -3.89 -16.93 16 3 C 0.03 0.50 5.45 85.56 0.47 0.97 16 4 C 0.51 8.65 7.50 87.66 0.66 9.31 16 5 O -0.56 -14.79 13.99 -3.03 -0.04 -14.83 16 6 N -0.71 -5.83 5.09 -439.26 -2.24 -8.07 16 7 C 0.15 1.17 2.89 45.69 0.13 1.31 16 8 H 0.10 1.07 7.57 -2.39 -0.02 1.05 16 9 C -0.14 -1.13 6.07 31.57 0.19 -0.94 16 10 C -0.57 -3.27 7.31 72.66 0.53 -2.74 16 11 S 2.41 21.21 6.10 -56.49 -0.34 20.87 16 12 O -0.97 -15.68 18.14 -127.47 -2.31 -18.00 16 13 O -0.98 -16.89 18.15 -127.47 -2.31 -19.20 16 14 C -0.59 -1.69 6.92 72.38 0.50 -1.19 16 15 C 0.07 1.87 4.32 86.30 0.37 2.24 16 16 C 0.02 0.65 2.13 -12.60 -0.03 0.62 16 17 H 0.11 3.72 6.33 -2.39 -0.02 3.70 16 18 C 0.27 11.09 13.67 89.44 1.22 12.32 16 19 N -0.52 -23.93 18.54 20.01 0.37 -23.56 16 20 C 0.04 1.78 4.42 29.85 0.13 1.91 16 21 C -0.54 -28.29 8.60 25.60 0.22 -28.07 16 22 H 0.05 2.62 7.59 -2.91 -0.02 2.60 16 23 C 0.01 0.72 5.46 84.65 0.46 1.18 16 24 N -0.92 -51.73 13.29 21.45 0.28 -51.45 16 25 Si 0.94 43.15 29.54 68.60 2.03 45.18 16 26 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 29 H 0.06 1.53 6.37 -2.39 -0.02 1.51 16 30 H 0.07 1.81 5.82 -2.39 -0.01 1.80 16 31 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.12 1.39 7.93 -2.39 -0.02 1.37 16 33 H 0.10 0.86 8.12 -2.39 -0.02 0.84 16 34 H 0.42 0.46 8.37 -92.71 -0.78 -0.31 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.16 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.17 -0.32 7.77 -2.39 -0.02 -0.34 16 40 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 41 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 42 H 0.09 2.08 7.93 -2.39 -0.02 2.06 16 43 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -85.44 387.44 -2.22 -87.65 By element: Atomic # 1 Polarization: -0.43 SS G_CDS: 0.24 Total: -0.19 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: 6.01 Total: -1.49 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -5.48 Total: -100.00 kcal Atomic # 8 Polarization: -47.36 SS G_CDS: -4.67 Total: -52.03 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 21.21 SS G_CDS: -0.34 Total: 20.87 kcal Total: -85.44 -2.22 -87.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245749052.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.869 kcal (2) G-P(sol) polarization free energy of solvation -85.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds