Wall clock time and date at job start Wed Apr 1 2020 02:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00140 * 2 1 4 4 C 1.34783 * 119.99984 * 179.97438 * 2 1 3 5 5 O 1.21280 * 119.99690 * 0.02562 * 4 2 1 6 6 C 1.50701 * 119.99962 * 180.02562 * 4 2 1 7 7 N 1.46494 * 109.47179 * 180.02562 * 6 4 2 8 8 C 1.34382 * 126.77055 * 124.99906 * 7 6 4 9 9 N 1.30847 * 108.21319 * 180.02562 * 8 7 6 10 10 C 1.33657 * 109.78095 * 359.97438 * 9 8 7 11 11 N 1.39741 * 125.60922 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00055 * 0.30555 * 11 10 9 13 13 O 1.21606 * 119.99633 * 359.72185 * 12 11 10 14 14 C 1.47585 * 120.00141 * 179.72207 * 12 11 10 15 15 C 1.40039 * 119.89473 * 359.72123 * 14 12 11 16 16 C 1.36306 * 120.10039 * 179.75882 * 15 14 12 17 17 C 1.40895 * 119.89331 * 0.51559 * 16 15 14 18 18 C 1.41098 * 120.09804 * 179.71517 * 17 16 15 19 19 H 1.08002 * 119.99966 * 205.08367 * 18 17 16 20 20 C 1.40232 * 119.99841 * 25.09041 * 18 17 16 21 21 N 1.30640 * 120.00018 * 18.01766 * 20 18 17 22 22 Si 1.86806 * 119.99534 * 198.01714 * 20 18 17 23 23 H 1.48495 * 109.47050 * 94.52597 * 22 20 18 24 24 H 1.48503 * 109.46816 * 214.52389 * 22 20 18 25 25 H 1.48504 * 109.47150 * 334.52320 * 22 20 18 26 26 C 1.40893 * 119.79974 * 359.74331 * 17 16 15 27 27 C 1.36303 * 119.89378 * 359.97438 * 26 17 16 28 28 N 1.31203 * 108.78069 * 0.23077 * 10 9 8 29 29 H 1.08997 * 109.47580 * 270.00061 * 1 2 3 30 30 H 1.09004 * 109.47176 * 30.00363 * 1 2 3 31 31 H 1.09004 * 109.47082 * 149.99709 * 1 2 3 32 32 H 1.09000 * 109.47231 * 180.02562 * 3 2 1 33 33 H 1.09003 * 109.47115 * 299.99860 * 3 2 1 34 34 H 1.08997 * 109.47398 * 59.99785 * 3 2 1 35 35 H 1.08998 * 109.47451 * 59.99846 * 6 4 2 36 36 H 1.09003 * 109.47150 * 300.00091 * 6 4 2 37 37 H 1.08004 * 125.89315 * 359.97438 * 8 7 6 38 38 H 0.96996 * 119.99491 * 180.02562 * 11 10 9 39 39 H 1.07997 * 119.94894 * 0.02562 * 15 14 12 40 40 H 1.07999 * 120.04817 * 180.23268 * 16 15 14 41 41 H 0.97009 * 119.99442 * 180.02562 * 21 20 18 42 42 H 1.08006 * 120.05230 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.94859 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1673 0.0005 5 8 1.5324 -2.2175 0.0005 6 6 3.6459 -1.1673 0.0011 7 7 4.1342 -2.5484 0.0010 8 6 4.9848 -3.1008 -0.8806 9 7 5.1726 -4.3501 -0.5400 10 6 4.4592 -4.6327 0.5544 11 7 4.4159 -5.8713 1.2000 12 6 5.1401 -6.9042 0.7257 13 8 5.8273 -6.7597 -0.2672 14 6 5.0991 -8.2106 1.4111 15 6 4.3115 -8.3729 2.5576 16 6 4.2667 -9.5789 3.1911 17 6 5.0229 -10.6602 2.6970 18 6 4.9844 -11.9088 3.3529 19 1 5.8143 -12.5936 3.2595 20 6 3.8685 -12.2607 4.1258 21 7 2.7384 -11.6244 3.9690 22 14 3.9982 -13.6393 5.3798 23 1 4.3107 -13.0670 6.7139 24 1 2.7080 -14.3718 5.4452 25 1 5.0788 -14.5749 4.9769 26 6 5.8180 -10.4906 1.5463 27 6 5.8521 -9.2825 0.9161 28 7 3.8020 -3.5575 0.9196 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8900 -0.5139 31 1 -0.3633 -0.8900 -0.5139 32 1 3.2691 1.0695 -0.0005 33 1 1.9342 1.8403 -0.8900 34 1 1.9342 1.8403 0.8899 35 1 4.0089 -0.6532 0.8911 36 1 4.0096 -0.6536 -0.8889 37 1 5.4351 -2.6002 -1.7251 38 1 3.8677 -5.9864 1.9919 39 1 3.7354 -7.5423 2.9379 40 1 3.6561 -9.7041 4.0731 41 1 1.9666 -11.8677 4.5040 42 1 6.3997 -11.3166 1.1642 43 1 6.4616 -9.1514 0.0342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270318517.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:00:56 Heat of formation + Delta-G solvation = 46.679185 kcal Electronic energy + Delta-G solvation = -28047.127584 eV Core-core repulsion = 23901.387579 eV Total energy + Delta-G solvation = -4145.740005 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.15396 -40.98584 -40.64412 -38.94018 -36.65463 -36.14722 -35.70313 -34.46018 -32.31066 -31.80181 -31.32821 -30.01883 -28.31448 -27.77120 -26.39824 -24.55450 -23.39901 -22.94010 -22.44193 -21.01606 -20.49997 -19.39813 -18.99318 -18.47215 -18.13924 -17.43925 -17.19676 -17.07220 -16.70164 -16.29973 -15.91297 -15.76439 -15.52064 -15.32520 -15.05362 -14.69232 -14.51268 -14.42985 -13.94124 -13.72854 -13.66128 -13.37801 -13.36756 -13.24256 -12.92041 -12.87915 -12.81807 -12.63814 -12.40411 -12.07945 -11.77642 -11.39689 -11.21625 -11.17390 -11.11748 -10.78993 -10.58613 -9.76493 -9.71860 -9.59483 -9.42491 -8.81761 -6.50607 0.25979 0.65471 1.05425 1.13805 1.38216 1.42227 1.45281 1.54613 1.76583 1.88589 2.15868 2.16474 2.32036 2.78823 3.29449 3.44592 3.66417 3.73423 4.03941 4.08826 4.22609 4.29124 4.33399 4.40281 4.42742 4.49963 4.53979 4.78504 4.88617 4.91200 4.98291 5.00812 5.11910 5.21157 5.25864 5.40712 5.54754 5.58681 5.72758 5.83558 5.95257 5.97099 6.18926 6.23168 6.28646 6.51220 6.74203 6.85403 7.04353 7.16508 7.33922 8.13638 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.001977 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.412542 B =14156.246722 C =15345.510829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.618 5.618 3 C 0.063 3.937 4 C 0.486 3.514 5 O -0.574 6.574 6 C 0.113 3.887 7 N -0.371 5.371 8 C 0.281 3.719 9 N -0.569 5.569 10 C 0.430 3.570 11 N -0.631 5.631 12 C 0.574 3.426 13 O -0.544 6.544 14 C -0.291 4.291 15 C -0.055 4.055 16 C -0.195 4.195 17 C 0.102 3.898 18 C -0.466 4.466 19 H 0.090 0.910 20 C 0.036 3.964 21 N -0.797 5.797 22 Si 0.991 3.009 23 H -0.259 1.259 24 H -0.266 1.266 25 H -0.255 1.255 26 C -0.248 4.248 27 C -0.025 4.025 28 N -0.345 5.345 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.146 0.854 36 H 0.191 0.809 37 H 0.281 0.719 38 H 0.425 0.575 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.298 0.702 42 H 0.110 0.890 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.239 27.901 -4.330 28.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.352 5.352 3 C -0.078 4.078 4 C 0.273 3.727 5 O -0.452 6.452 6 C -0.011 4.011 7 N -0.164 5.164 8 C -0.015 4.015 9 N -0.300 5.300 10 C 0.061 3.939 11 N -0.285 5.285 12 C 0.368 3.632 13 O -0.420 6.420 14 C -0.296 4.296 15 C -0.074 4.074 16 C -0.215 4.215 17 C 0.099 3.901 18 C -0.493 4.493 19 H 0.108 0.892 20 C -0.184 4.184 21 N -0.420 5.420 22 Si 0.810 3.190 23 H -0.183 1.183 24 H -0.190 1.190 25 H -0.178 1.178 26 C -0.267 4.267 27 C -0.044 4.044 28 N -0.181 5.181 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.208 0.792 37 H 0.296 0.704 38 H 0.264 0.736 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.615 27.294 -4.523 27.790 hybrid contribution -0.734 -0.646 0.737 1.224 sum -3.349 26.648 -3.786 27.123 Atomic orbital electron populations 1.21682 0.78904 1.03374 1.02032 1.47896 1.07663 1.06786 1.72857 1.22281 0.98063 0.83317 1.04095 1.21264 0.91178 0.83750 0.76511 1.90830 1.70795 1.33268 1.50314 1.22182 0.90683 0.77648 1.10540 1.49943 1.35311 1.10225 1.20911 1.27183 0.90488 0.88036 0.95808 1.70554 1.28587 1.15802 1.15009 1.20632 0.93758 0.87821 0.91698 1.42606 1.48701 1.05886 1.31298 1.18633 0.77753 0.83556 0.83265 1.90719 1.41352 1.83547 1.26414 1.18901 1.13434 0.93076 1.04154 1.20710 0.95838 0.97137 0.93765 1.20975 1.05628 0.92308 1.02542 1.18173 0.89018 0.93563 0.89362 1.20171 1.03238 1.01319 1.24556 0.89190 1.27005 0.93409 1.00289 0.97689 1.69778 1.01676 1.37534 1.32991 0.85053 0.79327 0.77038 0.77578 1.18338 1.19036 1.17803 1.20857 1.09223 0.97345 0.99319 1.20492 0.94877 0.91968 0.97105 1.78178 1.25645 0.96997 1.17307 0.92877 0.87710 0.93386 0.87784 0.89563 0.90559 0.83616 0.79247 0.70389 0.73566 0.86483 0.86816 0.89107 0.87160 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 10.48 127.77 1.34 2.32 16 2 N -0.62 -6.77 3.27 -871.88 -2.85 -9.62 16 3 C 0.06 -0.02 10.60 127.77 1.35 1.33 16 4 C 0.49 9.16 7.71 87.66 0.68 9.84 16 5 O -0.57 -18.98 15.31 -3.03 -0.05 -19.03 16 6 C 0.11 1.18 5.34 85.63 0.46 1.64 16 7 N -0.37 -8.80 3.41 -355.84 -1.21 -10.02 16 8 C 0.28 6.59 12.61 180.37 2.28 8.86 16 9 N -0.57 -21.60 9.37 -201.19 -1.88 -23.49 16 10 C 0.43 17.43 8.80 260.84 2.30 19.73 16 11 N -0.63 -26.63 5.38 -315.72 -1.70 -28.33 16 12 C 0.57 27.49 7.73 86.71 0.67 28.16 16 13 O -0.54 -28.57 14.99 -4.05 -0.06 -28.63 16 14 C -0.29 -14.22 5.89 -19.94 -0.12 -14.33 16 15 C -0.06 -2.61 9.47 22.26 0.21 -2.40 16 16 C -0.20 -10.03 8.63 22.47 0.19 -9.83 16 17 C 0.10 5.42 5.57 -21.28 -0.12 5.30 16 18 C -0.47 -23.73 9.04 23.46 0.21 -23.52 16 19 H 0.09 4.36 7.91 -2.91 -0.02 4.33 16 20 C 0.04 1.67 5.13 85.35 0.44 2.11 16 21 N -0.80 -39.03 10.99 21.87 0.24 -38.79 16 22 Si 0.99 35.27 29.60 68.60 2.03 37.30 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 24 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 25 H -0.25 -8.85 7.11 99.48 0.71 -8.14 16 26 C -0.25 -12.52 9.73 22.47 0.22 -12.30 16 27 C -0.03 -1.25 9.52 22.26 0.21 -1.04 16 28 N -0.35 -12.30 11.82 -58.94 -0.70 -13.00 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.10 0.50 8.07 -2.38 -0.02 0.48 16 31 H 0.05 0.87 7.42 -2.39 -0.02 0.85 16 32 H 0.10 -0.57 5.77 -2.39 -0.01 -0.59 16 33 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 34 H 0.08 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.15 0.72 7.79 -2.39 -0.02 0.70 16 36 H 0.19 -0.39 7.73 -2.39 -0.02 -0.41 16 37 H 0.28 2.38 8.06 -2.91 -0.02 2.35 16 38 H 0.42 16.09 6.82 -92.71 -0.63 15.45 16 39 H 0.12 4.71 6.37 -2.91 -0.02 4.69 16 40 H 0.11 5.90 6.19 -2.91 -0.02 5.88 16 41 H 0.30 12.98 8.29 -92.70 -0.77 12.21 16 42 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 43 H 0.11 5.17 7.63 -2.91 -0.02 5.14 16 Total: -1.00 -90.54 372.27 4.58 -85.96 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: 0.44 Total: 31.78 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 10.32 Total: 15.86 kcal Atomic # 7 Polarization: -115.14 SS G_CDS: -8.11 Total: -123.24 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.11 Total: -47.66 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.03 Total: 37.30 kcal Total: -90.54 4.58 -85.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270318517.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.643 kcal (2) G-P(sol) polarization free energy of solvation -90.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds