Wall clock time and date at job start Wed Apr 1 2020 01:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 113.99721 * 2 1 4 4 C 1.52998 * 109.46991 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.47021 * 64.99999 * 4 3 2 6 6 C 1.46498 * 120.00094 * 275.00086 * 5 4 3 7 7 C 1.50697 * 109.46918 * 274.91511 * 6 5 4 8 8 H 1.07997 * 120.00282 * 5.31852 * 7 6 5 9 9 C 1.37881 * 120.00060 * 185.31521 * 7 6 5 10 10 N 1.31509 * 120.00279 * 184.79291 * 9 7 6 11 11 Si 1.86807 * 119.99628 * 4.79790 * 9 7 6 12 12 H 1.48506 * 109.46979 * 90.00107 * 11 9 7 13 13 H 1.48500 * 109.46872 * 209.99812 * 11 9 7 14 14 H 1.48496 * 109.47242 * 329.99785 * 11 9 7 15 15 S 1.65603 * 119.99893 * 95.00345 * 5 4 3 16 16 O 1.42101 * 106.40094 * 335.18860 * 15 5 4 17 17 O 1.42098 * 106.40126 * 202.27289 * 15 5 4 18 18 N 1.65597 * 107.22108 * 88.72917 * 15 5 4 19 19 C 1.46495 * 119.99533 * 91.67331 * 18 15 5 20 20 C 1.46498 * 120.00159 * 271.67190 * 18 15 5 21 21 C 1.50695 * 109.47381 * 263.30334 * 20 18 15 22 22 C 1.38226 * 119.61853 * 94.71624 * 21 20 18 23 23 C 1.38629 * 119.16207 * 179.74684 * 22 21 20 24 24 C 1.38674 * 118.41714 * 0.47523 * 23 22 21 25 25 C 1.38180 * 119.16659 * 359.50602 * 24 23 22 26 26 N 1.31850 * 119.61744 * 274.69604 * 21 20 18 27 27 H 1.09004 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47266 * 299.99997 * 1 2 3 29 29 H 1.09001 * 109.47574 * 59.99759 * 1 2 3 30 30 H 1.08999 * 109.47198 * 60.00363 * 3 2 1 31 31 H 1.08996 * 109.47294 * 300.00184 * 3 2 1 32 32 H 1.09000 * 109.47312 * 305.00441 * 4 3 2 33 33 H 1.09002 * 109.47371 * 184.99787 * 4 3 2 34 34 H 1.08995 * 109.46865 * 34.91527 * 6 5 4 35 35 H 1.09001 * 109.46777 * 154.91809 * 6 5 4 36 36 H 0.97004 * 120.00230 * 185.03956 * 10 9 7 37 37 H 1.09007 * 109.47360 * 269.99731 * 19 18 15 38 38 H 1.08994 * 109.47555 * 30.00157 * 19 18 15 39 39 H 1.09008 * 109.47198 * 150.00372 * 19 18 15 40 40 H 1.08999 * 109.46908 * 143.29711 * 20 18 15 41 41 H 1.09001 * 109.47039 * 23.30476 * 20 18 15 42 42 H 1.08004 * 120.42009 * 359.95672 * 22 21 20 43 43 H 1.07999 * 120.79256 * 180.23016 * 23 22 21 44 44 H 1.08005 * 120.42112 * 179.78089 * 24 23 22 45 45 H 1.08000 * 119.62081 * 180.25515 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.0003 -0.8950 -1.3783 7 6 5.3002 -1.4243 -0.8296 8 1 5.9972 -0.7531 -0.3500 9 6 5.5997 -2.7657 -0.9397 10 7 6.6885 -3.2446 -0.3789 11 14 4.4587 -3.9028 -1.8857 12 1 4.8742 -3.9474 -3.3107 13 1 4.5291 -5.2684 -1.3065 14 1 3.0658 -3.3965 -1.7918 15 16 4.4453 1.5131 -2.5263 16 8 3.7940 2.7645 -2.3561 17 8 4.3039 0.7158 -3.6941 18 7 6.0664 1.8019 -2.3508 19 6 7.0419 0.9104 -2.9830 20 6 6.5250 2.9490 -1.5632 21 6 6.8221 4.1042 -2.4842 22 6 5.8514 5.0607 -2.7153 23 6 6.1366 6.1222 -3.5600 24 6 7.3898 6.1768 -4.1513 25 6 8.3097 5.1840 -3.8727 26 7 8.0050 4.1909 -3.0600 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8463 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8514 0.5682 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.1686 -1.3219 -0.8179 35 1 3.9102 -1.1708 -2.4289 36 1 6.9378 -4.1718 -0.5172 37 1 7.2967 0.1042 -2.2951 38 1 6.6136 0.4900 -3.8928 39 1 7.9414 1.4738 -3.2315 40 1 7.4288 2.6772 -1.0179 41 1 5.7475 3.2385 -0.8563 42 1 4.8841 4.9840 -2.2410 43 1 5.3991 6.8864 -3.7562 44 1 7.6453 6.9875 -4.8177 45 1 9.2893 5.2215 -4.3259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282898620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:35 Heat of formation + Delta-G solvation = -94.874232 kcal Electronic energy + Delta-G solvation = -29660.172133 eV Core-core repulsion = 25611.445111 eV Total energy + Delta-G solvation = -4048.727022 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09919 -39.09335 -38.38947 -37.28985 -36.99793 -36.90007 -34.51948 -33.34560 -32.60163 -31.34423 -28.86817 -28.60076 -26.99231 -25.96650 -24.36809 -24.23424 -23.23089 -22.90210 -19.93775 -19.10231 -18.76389 -18.46076 -17.84344 -17.48203 -17.11709 -16.97761 -16.81911 -16.45164 -16.33529 -15.85450 -15.71674 -15.34111 -14.95026 -14.50197 -14.45051 -14.18645 -14.04208 -13.99179 -13.80774 -13.62872 -13.43634 -13.41844 -13.31023 -13.00718 -12.71424 -12.65595 -12.61747 -12.54352 -12.46977 -12.12088 -12.05631 -11.85627 -11.61295 -10.78508 -10.69464 -10.56430 -10.50955 -10.03705 -9.95072 -9.68215 -8.23779 -6.24861 -0.42075 0.18903 0.40345 1.36926 1.40305 1.49651 1.91111 2.38836 2.45809 2.92090 2.97185 3.12360 3.30958 3.36224 3.67345 3.92471 4.00019 4.06544 4.19676 4.27163 4.28237 4.38828 4.46038 4.50474 4.54011 4.56523 4.60552 4.72568 4.76962 4.80478 4.87363 4.90860 4.98482 5.02389 5.07465 5.20128 5.27604 5.31705 5.39244 5.50628 5.57113 5.82411 5.86872 6.37138 6.38246 6.79227 7.08433 7.38678 8.90848 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012159 B = 0.004518 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.336011 B = 6196.022719 C = 7736.517437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.411 6.411 3 C 0.042 3.958 4 C 0.123 3.877 5 N -0.984 5.984 6 C 0.230 3.770 7 C -0.524 4.524 8 H 0.059 0.941 9 C 0.028 3.972 10 N -0.934 5.934 11 Si 0.911 3.089 12 H -0.274 1.274 13 H -0.280 1.280 14 H -0.251 1.251 15 S 2.791 3.209 16 O -0.984 6.984 17 O -1.016 7.016 18 N -0.995 5.995 19 C 0.098 3.902 20 C 0.173 3.827 21 C 0.086 3.914 22 C -0.168 4.168 23 C -0.084 4.084 24 C -0.166 4.166 25 C 0.080 3.920 26 N -0.498 5.498 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.051 0.949 35 H 0.022 0.978 36 H 0.265 0.735 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.146 0.854 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 19.312 -2.279 19.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.330 6.330 3 C -0.036 4.036 4 C -0.002 4.002 5 N -0.824 5.824 6 C 0.105 3.895 7 C -0.563 4.563 8 H 0.077 0.923 9 C -0.171 4.171 10 N -0.575 5.575 11 Si 0.736 3.264 12 H -0.199 1.199 13 H -0.206 1.206 14 H -0.174 1.174 15 S 2.801 3.199 16 O -0.967 6.967 17 O -1.000 7.000 18 N -0.834 5.834 19 C -0.048 4.048 20 C 0.047 3.953 21 C -0.052 4.052 22 C -0.188 4.188 23 C -0.109 4.109 24 C -0.185 4.185 25 C -0.077 4.077 26 N -0.208 5.208 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.130 0.870 34 H 0.069 0.931 35 H 0.040 0.960 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.164 0.836 43 H 0.180 0.820 44 H 0.186 0.814 45 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.220 18.605 -2.710 19.270 hybrid contribution -0.644 -0.461 -0.331 0.858 sum -4.864 18.144 -3.041 19.030 Atomic orbital electron populations 1.22905 0.80292 1.03286 1.00779 1.87996 1.20883 1.28640 1.95514 1.23176 0.94018 0.84755 1.01621 1.21465 0.92871 0.98908 0.86966 1.57466 1.79198 1.16796 1.28913 1.19260 0.97115 0.76618 0.96479 1.21644 1.03576 0.93650 1.37460 0.92294 1.25464 0.96465 0.99259 0.95868 1.70005 1.26916 1.16051 1.44509 0.86257 0.81490 0.79145 0.79517 1.19905 1.20560 1.17428 1.01532 0.72988 0.72342 0.73083 1.93507 1.73816 1.42428 1.86987 1.93499 1.86223 1.71544 1.48738 1.57611 1.24592 1.35799 1.65350 1.21437 0.93027 0.93192 0.97128 1.20208 1.02847 0.81448 0.90819 1.21696 0.90146 0.95973 0.97428 1.22395 1.00812 0.95425 1.00182 1.22022 0.97655 0.97404 0.93868 1.22551 0.94086 1.00965 1.00946 1.23294 1.00995 0.89578 0.93872 1.67449 1.20180 1.24541 1.08678 0.89518 0.92163 0.93933 0.89332 0.93398 0.89790 0.87033 0.93149 0.95993 0.92576 0.92968 0.92157 0.89302 0.88284 0.87237 0.83621 0.82031 0.81403 0.80450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -13.57 9.02 -148.98 -1.34 -14.92 16 3 C 0.04 1.20 6.28 71.98 0.45 1.65 16 4 C 0.12 3.90 5.79 86.38 0.50 4.40 16 5 N -0.98 -39.16 2.81 -519.85 -1.46 -40.62 16 6 C 0.23 11.04 4.32 85.63 0.37 11.41 16 7 C -0.52 -28.36 9.93 25.60 0.25 -28.11 16 8 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 9 C 0.03 1.61 5.47 84.66 0.46 2.07 16 10 N -0.93 -56.03 13.95 21.45 0.30 -55.73 16 11 Si 0.91 44.30 27.36 68.60 1.88 46.17 16 12 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.25 -11.65 6.76 99.48 0.67 -10.98 16 15 S 2.79 108.47 6.01 -56.49 -0.34 108.13 16 16 O -0.98 -34.68 14.87 -128.00 -1.90 -36.59 16 17 O -1.02 -47.57 15.24 -128.00 -1.95 -49.52 16 18 N -0.99 -34.91 3.23 -543.24 -1.75 -36.66 16 19 C 0.10 3.62 10.66 127.77 1.36 4.98 16 20 C 0.17 4.94 5.65 85.63 0.48 5.42 16 21 C 0.09 2.40 6.35 42.55 0.27 2.67 16 22 C -0.17 -4.11 9.38 22.36 0.21 -3.90 16 23 C -0.08 -1.57 10.18 22.47 0.23 -1.34 16 24 C -0.17 -2.75 10.11 22.36 0.23 -2.53 16 25 C 0.08 1.65 11.18 84.67 0.95 2.60 16 26 N -0.50 -13.72 10.16 -183.89 -1.87 -15.59 16 27 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.82 8.11 -2.39 -0.02 2.80 16 33 H 0.11 2.73 7.15 -2.39 -0.02 2.72 16 34 H 0.05 2.45 6.24 -2.39 -0.01 2.43 16 35 H 0.02 1.13 5.89 -2.39 -0.01 1.11 16 36 H 0.27 15.05 8.32 -92.71 -0.77 14.28 16 37 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.06 2.36 7.01 -2.39 -0.02 2.34 16 39 H 0.09 2.91 7.96 -2.38 -0.02 2.89 16 40 H 0.10 2.73 8.12 -2.39 -0.02 2.71 16 41 H 0.11 2.62 7.01 -2.39 -0.02 2.61 16 42 H 0.15 3.51 7.12 -2.91 -0.02 3.49 16 43 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 44 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 45 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 Total: -1.00 -73.66 383.94 -0.48 -74.14 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.95 Total: 20.02 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: 7.02 Total: 1.15 kcal Atomic # 7 Polarization: -143.81 SS G_CDS: -4.79 Total: -148.60 kcal Atomic # 8 Polarization: -95.82 SS G_CDS: -5.20 Total: -101.02 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.17 kcal Atomic # 16 Polarization: 108.47 SS G_CDS: -0.34 Total: 108.13 kcal Total: -73.66 -0.48 -74.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282898620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.734 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds