Wall clock time and date at job start Wed Apr 1 2020 02:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99778 * 2 1 4 4 C 1.53001 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46845 * 66.13685 * 4 3 2 6 6 C 1.46501 * 120.00168 * 274.38464 * 5 4 3 7 7 C 1.50704 * 109.47008 * 280.59259 * 6 5 4 8 8 H 1.07990 * 120.00164 * 3.92772 * 7 6 5 9 9 C 1.37882 * 119.99585 * 183.92394 * 7 6 5 10 10 N 1.31513 * 119.99569 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00331 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.47133 * 89.99405 * 11 9 7 13 13 H 1.48499 * 109.47302 * 209.99812 * 11 9 7 14 14 H 1.48503 * 109.47020 * 330.00177 * 11 9 7 15 15 S 1.65601 * 119.99798 * 94.38745 * 5 4 3 16 16 O 1.42105 * 106.39891 * 330.06102 * 15 5 4 17 17 O 1.42101 * 106.39974 * 197.14658 * 15 5 4 18 18 N 1.65597 * 107.21971 * 83.60497 * 15 5 4 19 19 C 1.46495 * 120.00057 * 64.29149 * 18 15 5 20 20 C 1.53003 * 109.47123 * 164.85912 * 19 18 15 21 21 C 1.50700 * 109.47229 * 180.02562 * 20 19 18 22 22 C 1.38223 * 119.61731 * 124.72688 * 21 20 19 23 23 C 1.38628 * 119.15705 * 179.74709 * 22 21 20 24 24 C 1.38675 * 118.42255 * 0.51860 * 23 22 21 25 25 C 1.38181 * 119.15993 * 359.72188 * 24 23 22 26 26 N 1.31852 * 119.61716 * 304.99745 * 21 20 19 27 27 H 1.09003 * 109.47023 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47033 * 299.99099 * 1 2 3 29 29 H 1.09002 * 109.47371 * 59.99785 * 1 2 3 30 30 H 1.09002 * 109.46674 * 60.00456 * 3 2 1 31 31 H 1.09001 * 109.47350 * 300.00149 * 3 2 1 32 32 H 1.08998 * 109.47283 * 306.14416 * 4 3 2 33 33 H 1.09001 * 109.47553 * 186.13829 * 4 3 2 34 34 H 1.08996 * 109.46996 * 40.59176 * 6 5 4 35 35 H 1.08998 * 109.47053 * 160.59497 * 6 5 4 36 36 H 0.97004 * 120.00094 * 179.97438 * 10 9 7 37 37 H 0.97001 * 119.99813 * 244.29407 * 18 15 5 38 38 H 1.08996 * 109.47191 * 44.86577 * 19 18 15 39 39 H 1.08995 * 109.47348 * 284.86084 * 19 18 15 40 40 H 1.08998 * 109.46942 * 59.99912 * 20 19 18 41 41 H 1.09009 * 109.47024 * 300.00195 * 20 19 18 42 42 H 1.07997 * 120.42280 * 359.97438 * 22 21 20 43 43 H 1.08009 * 120.79115 * 180.26137 * 23 22 21 44 44 H 1.07995 * 120.41778 * 179.70465 * 24 23 22 45 45 H 1.07999 * 119.61632 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9776 0.5894 -1.2641 6 6 4.0154 -0.8675 -1.4138 7 6 5.2574 -1.4082 -0.7534 8 1 5.9166 -0.7428 -0.2160 9 6 5.5519 -2.7527 -0.8352 10 7 6.6360 -3.2246 -0.2593 11 14 4.4120 -3.9038 -1.7653 12 1 4.8357 -3.9782 -3.1866 13 1 4.4734 -5.2579 -1.1589 14 1 3.0207 -3.3901 -1.6898 15 16 4.4347 1.5633 -2.5231 16 8 3.6809 2.7614 -2.3977 17 8 4.4131 0.7497 -3.6880 18 7 6.0180 1.9784 -2.2719 19 6 7.0572 0.9459 -2.2870 20 6 8.4314 1.6073 -2.4106 21 6 9.5004 0.5452 -2.4268 22 6 10.4009 0.4982 -3.4744 23 6 11.3836 -0.4795 -3.4769 24 6 11.4174 -1.3842 -2.4265 25 6 10.4805 -1.2782 -1.4163 26 7 9.5626 -0.3318 -1.4441 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8463 0.8901 31 1 1.6886 1.8464 -0.8900 32 1 3.8502 0.5517 0.8290 33 1 3.9784 2.1746 0.1092 34 1 3.1343 -1.3040 -0.9435 35 1 4.0264 -1.1237 -2.4732 36 1 6.8431 -4.1705 -0.3165 37 1 6.2573 2.9052 -2.1148 38 1 6.8965 0.2810 -3.1356 39 1 7.0123 0.3716 -1.3617 40 1 8.5922 2.2723 -1.5621 41 1 8.4763 2.1816 -3.3360 42 1 10.3419 1.2163 -4.2788 43 1 12.1034 -0.5379 -4.2801 44 1 12.1662 -2.1619 -2.3985 45 1 10.5002 -1.9786 -0.5945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283458494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:10 Heat of formation + Delta-G solvation = -81.370707 kcal Electronic energy + Delta-G solvation = -29194.882682 eV Core-core repulsion = 25146.741218 eV Total energy + Delta-G solvation = -4048.141465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.92019 -37.77236 -36.69923 -35.65493 -35.34862 -35.23746 -32.39924 -32.37971 -31.91386 -29.71228 -28.21652 -27.10429 -25.74180 -23.72110 -23.07161 -22.56841 -21.56216 -21.14722 -18.81943 -17.41974 -16.96814 -16.69949 -16.55688 -16.01575 -15.95141 -15.69974 -15.47832 -15.16315 -14.75530 -14.53974 -14.31859 -14.01115 -13.54226 -13.34589 -13.19516 -12.75037 -12.51333 -12.36509 -12.19217 -12.01750 -11.92132 -11.75210 -11.55044 -11.45479 -11.33832 -11.25566 -11.13169 -11.07899 -10.82063 -10.57457 -10.25223 -10.10208 -9.62282 -9.48504 -9.32265 -9.08262 -8.79990 -8.71239 -8.47414 -7.99599 -5.99179 -3.97333 1.23106 1.37999 1.54369 3.36566 3.43321 3.50387 3.51288 4.07468 4.12398 4.13866 4.50039 4.58696 4.83694 5.02880 5.08735 5.22300 5.30422 5.33188 5.37635 5.39825 5.43540 5.52401 5.57801 5.63876 5.65296 5.68155 5.78815 5.87716 5.90873 6.02898 6.04534 6.24595 6.31210 6.36899 6.47853 6.58638 6.81711 6.95516 7.12370 7.27419 7.38975 7.52148 7.59349 7.74588 8.37596 8.56688 9.04397 9.62190 11.11790 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.011185 B = 0.004520 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.702615 B = 6193.747731 C = 7833.527034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.042 3.958 4 C 0.137 3.863 5 N -0.979 5.979 6 C 0.213 3.787 7 C -0.535 4.535 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.886 5.886 11 Si 0.860 3.140 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.262 1.262 15 S 2.785 3.215 16 O -1.002 7.002 17 O -0.981 6.981 18 N -1.131 6.131 19 C 0.124 3.876 20 C -0.073 4.073 21 C 0.134 3.866 22 C -0.177 4.177 23 C -0.080 4.080 24 C -0.185 4.185 25 C 0.118 3.882 26 N -0.454 5.454 27 H 0.081 0.919 28 H 0.035 0.965 29 H 0.036 0.964 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.260 0.740 37 H 0.406 0.594 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.130 0.870 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.316 9.297 -1.878 10.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.037 4.037 4 C 0.010 3.990 5 N -0.819 5.819 6 C 0.090 3.910 7 C -0.574 4.574 8 H 0.102 0.898 9 C -0.123 4.123 10 N -0.524 5.524 11 Si 0.688 3.312 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.186 1.186 15 S 2.793 3.207 16 O -0.986 6.986 17 O -0.965 6.965 18 N -0.890 5.890 19 C -0.002 4.002 20 C -0.113 4.113 21 C -0.005 4.005 22 C -0.197 4.197 23 C -0.106 4.106 24 C -0.205 4.205 25 C -0.039 4.039 26 N -0.163 5.163 27 H 0.100 0.900 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.238 0.762 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.148 0.852 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.322 9.052 -1.953 9.547 hybrid contribution 0.329 -0.438 -0.817 0.984 sum 2.651 8.614 -2.771 9.429 Atomic orbital electron populations 1.22704 0.82377 1.02332 0.99276 1.88067 1.18446 1.27416 1.95199 1.23152 0.95434 0.84983 1.00087 1.21075 0.91093 0.98206 0.88607 1.57399 1.78991 1.18488 1.27046 1.19684 0.99140 0.74437 0.97787 1.21424 1.07072 0.94156 1.34704 0.89762 1.24761 0.94703 0.97865 0.94956 1.69917 1.24778 1.13870 1.43847 0.87085 0.82782 0.80726 0.80650 1.20169 1.21363 1.18610 1.01714 0.72676 0.72350 0.73965 1.93545 1.69459 1.47974 1.87640 1.93563 1.86538 1.69665 1.46726 1.55948 1.26094 1.16298 1.90680 1.21391 0.84347 0.88911 1.05521 1.20704 0.92281 0.95323 1.02956 1.21122 0.94565 0.94511 0.90314 1.21922 0.97160 1.00681 0.99935 1.21480 0.97375 0.94011 0.97717 1.22138 1.01496 1.00657 0.96233 1.22846 0.89032 0.94622 0.97425 1.67595 1.20716 1.02637 1.25320 0.90003 0.94614 0.94585 0.93025 0.93000 0.88622 0.90227 0.93148 0.94366 0.92984 0.76245 0.90816 0.87505 0.89696 0.90373 0.85244 0.85369 0.85216 0.82562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.64 9.09 -35.23 -0.32 -6.96 16 3 C 0.04 0.67 6.28 37.16 0.23 0.90 16 4 C 0.14 2.35 5.72 -4.04 -0.02 2.33 16 5 N -0.98 -19.88 2.83 -115.66 -0.33 -20.20 16 6 C 0.21 5.10 4.41 -5.19 -0.02 5.08 16 7 C -0.53 -14.13 9.07 -34.44 -0.31 -14.44 16 8 H 0.08 2.34 6.69 -52.49 -0.35 1.99 16 9 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 10 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 11 Si 0.86 21.50 27.39 -169.99 -4.66 16.85 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.26 -6.38 6.66 56.52 0.38 -6.01 16 15 S 2.78 54.21 6.06 -107.50 -0.65 53.56 16 16 O -1.00 -19.55 17.11 -57.17 -0.98 -20.53 16 17 O -0.98 -22.53 16.03 -57.17 -0.92 -23.45 16 18 N -1.13 -18.25 6.05 -10.62 -0.06 -18.31 16 19 C 0.12 2.22 6.05 -4.04 -0.02 2.19 16 20 C -0.07 -1.03 5.76 -27.88 -0.16 -1.20 16 21 C 0.13 2.11 6.18 -82.59 -0.51 1.60 16 22 C -0.18 -2.32 9.71 -39.44 -0.38 -2.70 16 23 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 24 C -0.19 -2.40 10.11 -39.44 -0.40 -2.80 16 25 C 0.12 1.90 11.18 -17.55 -0.20 1.70 16 26 N -0.45 -8.30 9.88 -9.48 -0.09 -8.40 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.85 7.89 -51.93 -0.41 0.44 16 32 H 0.10 1.71 8.07 -51.93 -0.42 1.30 16 33 H 0.08 1.14 7.81 -51.93 -0.41 0.73 16 34 H 0.05 1.24 5.97 -51.93 -0.31 0.93 16 35 H 0.04 0.97 5.98 -51.93 -0.31 0.66 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.41 5.14 8.66 -34.47 -0.30 4.84 16 38 H 0.07 1.48 7.76 -51.93 -0.40 1.08 16 39 H 0.11 2.25 5.72 -51.93 -0.30 1.95 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.90 7.87 -51.92 -0.41 0.49 16 42 H 0.13 1.34 7.95 -52.49 -0.42 0.92 16 43 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 44 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.16 2.36 8.06 -52.49 -0.42 1.94 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -34.37 383.95 -9.20 -43.57 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.57 Total: 7.94 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.18 Total: -5.05 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: 0.29 Total: -71.71 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.22 Total: -50.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.66 Total: 16.85 kcal Atomic # 16 Polarization: 54.21 SS G_CDS: -0.65 Total: 53.56 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.37 -9.20 -43.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283458494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.801 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds