Wall clock time and date at job start Wed Apr 1 2020 02:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99773 * 2 1 4 4 N 1.46494 * 109.47332 * 126.18486 * 3 2 1 5 5 C 1.46499 * 120.00435 * 277.39860 * 4 3 2 6 6 C 1.50692 * 109.47197 * 270.00281 * 5 4 3 7 7 H 1.07995 * 120.00357 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99867 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00082 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99985 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47354 * 59.99665 * 10 8 6 12 12 H 1.48497 * 109.47344 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47139 * 299.99843 * 10 8 6 14 14 C 1.34776 * 120.00131 * 97.39692 * 4 3 2 15 15 O 1.21579 * 120.00281 * 185.65461 * 14 4 3 16 16 C 1.47621 * 119.99772 * 5.65984 * 14 4 3 17 17 C 1.39749 * 120.05513 * 311.15838 * 16 14 4 18 18 C 1.37749 * 120.03145 * 180.02562 * 17 16 14 19 19 C 1.38870 * 120.16065 * 359.97438 * 18 17 16 20 20 O 1.35738 * 119.94612 * 180.02562 * 19 18 17 21 21 C 1.42901 * 116.99411 * 359.97438 * 20 19 18 22 22 C 1.39526 * 120.11904 * 359.78845 * 19 18 17 23 23 N 1.40366 * 120.01571 * 180.25860 * 22 19 18 24 24 C 1.35040 * 127.37713 * 179.91225 * 23 22 19 25 25 N 1.30755 * 107.26875 * 179.84264 * 24 23 22 26 26 N 1.28417 * 110.64449 * 0.43995 * 25 24 23 27 27 N 1.28948 * 110.20172 * 359.72551 * 26 25 24 28 28 C 1.38284 * 119.96146 * 0.46318 * 22 19 18 29 29 H 1.07997 * 120.00395 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.99528 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00395 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46978 * 6.18539 * 3 2 1 33 33 H 1.09002 * 109.47137 * 246.18780 * 3 2 1 34 34 H 1.09010 * 109.46659 * 30.00186 * 5 4 3 35 35 H 1.08995 * 109.47646 * 149.99496 * 5 4 3 36 36 H 0.97000 * 119.99989 * 179.97438 * 9 8 6 37 37 H 1.08004 * 119.98732 * 0.04690 * 17 16 14 38 38 H 1.08007 * 119.92084 * 179.97438 * 18 17 16 39 39 H 1.09004 * 109.46996 * 60.00322 * 21 20 19 40 40 H 1.09000 * 109.47013 * 179.97438 * 21 20 19 41 41 H 1.08995 * 109.47585 * 300.00297 * 21 20 19 42 42 H 1.07995 * 126.36759 * 0.02562 * 24 23 22 43 43 H 1.07991 * 120.07812 * 179.79100 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0138 1.3204 1.1147 5 6 2.5605 1.6863 2.4589 6 6 2.7011 3.1746 2.6487 7 1 3.0896 3.7867 1.8484 8 6 2.3336 3.7548 3.8443 9 7 1.8600 3.0095 4.8188 10 14 2.5085 5.5997 4.0799 11 1 1.6836 6.3083 3.0687 12 1 2.0478 5.9707 5.4419 13 1 3.9329 5.9868 3.9161 14 6 4.3053 0.9979 0.9038 15 8 5.0714 0.9102 1.8437 16 6 4.7897 0.7510 -0.4687 17 6 4.0828 -0.1056 -1.3169 18 6 4.5355 -0.3360 -2.5973 19 6 5.6941 0.2818 -3.0495 20 8 6.1360 0.0521 -4.3122 21 6 5.3602 -0.8360 -5.1194 22 6 6.4022 1.1422 -2.2098 23 7 7.5701 1.7697 -2.6708 24 6 8.3644 2.6245 -1.9912 25 7 9.3408 2.9663 -2.7909 26 7 9.2126 2.3928 -3.9327 27 7 8.1601 1.6478 -3.9412 28 6 5.9551 1.3730 -0.9217 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3603 2.1306 0.1107 33 1 2.6045 1.4124 -0.9402 34 1 1.5152 1.4017 2.5798 35 1 3.1666 1.1665 3.2009 36 1 1.6018 3.4177 5.6600 37 1 3.1810 -0.5871 -0.9685 38 1 3.9880 -0.9987 -3.2513 39 1 4.3512 -0.4388 -5.2299 40 1 5.8224 -0.9313 -6.1019 41 1 5.3150 -1.8149 -4.6422 42 1 8.2215 2.9609 -0.9749 43 1 6.5036 2.0359 -0.2691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359414828.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:00 Heat of formation + Delta-G solvation = 100.192488 kcal Electronic energy + Delta-G solvation = -29599.339618 eV Core-core repulsion = 25455.920124 eV Total energy + Delta-G solvation = -4143.419494 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.28781 -41.83398 -40.61437 -38.51536 -37.37925 -36.25031 -35.05866 -33.70544 -33.39588 -31.82465 -31.55717 -29.56690 -28.31088 -27.02675 -26.21507 -25.52739 -24.52404 -23.42941 -22.84382 -21.39542 -20.64124 -19.59192 -18.83266 -18.54337 -17.84268 -17.77148 -17.64268 -17.24067 -16.92118 -16.71399 -16.32937 -16.06536 -15.48247 -15.42623 -15.18311 -14.75461 -14.51155 -14.35442 -14.20660 -14.00259 -13.69220 -13.50077 -13.30211 -13.03122 -13.01587 -12.92619 -12.64915 -12.54469 -12.35282 -12.21424 -12.17658 -12.06676 -12.01875 -11.66424 -11.60544 -10.83987 -10.62132 -10.33276 -10.13129 -9.54472 -9.31933 -8.21124 -6.35452 -0.77241 -0.21363 0.42441 0.63848 1.14284 1.33018 1.39760 1.42542 1.49688 1.71175 2.04516 2.22218 2.41390 2.52085 2.93952 3.09693 3.24627 3.51274 3.59254 3.60867 3.85281 3.99371 4.06256 4.11722 4.22425 4.29287 4.36432 4.40431 4.41584 4.44546 4.68964 4.77747 4.85833 4.92002 5.03650 5.06321 5.09159 5.17220 5.26116 5.33855 5.50395 5.72480 5.76460 5.95105 6.06657 6.15999 6.64268 6.74473 7.23211 7.26802 7.39213 8.85942 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.003468 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.589746 B = 8072.110437 C =10000.551589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.192 4.192 3 C 0.125 3.875 4 N -0.586 5.586 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.057 0.943 8 C 0.013 3.987 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.275 1.275 14 C 0.549 3.451 15 O -0.585 6.585 16 C -0.146 4.146 17 C -0.034 4.034 18 C -0.177 4.177 19 C 0.165 3.835 20 O -0.308 6.308 21 C 0.009 3.991 22 C 0.070 3.930 23 N -0.315 5.315 24 C 0.228 3.772 25 N -0.352 5.352 26 N -0.071 5.071 27 N -0.067 5.067 28 C -0.033 4.033 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.124 0.876 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.026 0.974 35 H 0.002 0.998 36 H 0.267 0.733 37 H 0.166 0.834 38 H 0.189 0.811 39 H 0.080 0.920 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.274 0.726 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 -9.208 -19.765 21.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.211 4.211 3 C 0.003 3.997 4 N -0.315 5.315 5 C 0.144 3.856 6 C -0.584 4.584 7 H 0.075 0.925 8 C -0.187 4.187 9 N -0.566 5.566 10 Si 0.787 3.213 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.201 1.201 14 C 0.338 3.662 15 O -0.467 6.467 16 C -0.151 4.151 17 C -0.052 4.052 18 C -0.196 4.196 19 C 0.115 3.885 20 O -0.219 6.219 21 C -0.084 4.084 22 C -0.023 4.023 23 N -0.105 5.105 24 C -0.068 4.068 25 N -0.202 5.202 26 N -0.066 5.066 27 N -0.053 5.053 28 C -0.054 4.054 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.142 0.858 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.044 0.956 35 H 0.020 0.980 36 H 0.076 0.924 37 H 0.183 0.817 38 H 0.206 0.794 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.290 0.710 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.855 -9.149 -20.466 22.435 hybrid contribution -0.587 0.810 1.652 1.931 sum 0.267 -8.339 -18.814 20.581 Atomic orbital electron populations 1.24089 0.95520 1.03045 0.97071 1.23320 0.96790 0.97970 1.03004 1.21015 0.92240 0.96807 0.89615 1.48102 1.07931 1.64485 1.10961 1.18743 0.94029 0.94272 0.78587 1.21681 1.43248 0.93562 0.99889 0.92521 1.25778 0.94528 1.03073 0.95306 1.70034 1.43800 1.37555 1.05163 0.85551 0.78637 0.79539 0.77618 1.18663 1.20659 1.20081 1.18580 0.82193 0.76890 0.88583 1.90759 1.56281 1.54104 1.45522 1.19478 0.97640 1.03793 0.94158 1.21894 0.98412 0.92984 0.91930 1.21453 0.96164 1.04298 0.97658 1.18979 0.92223 0.92185 0.85089 1.86308 1.51618 1.63493 1.20463 1.23581 0.97042 0.92727 0.95061 1.16685 0.88410 1.03026 0.94200 1.48925 1.19368 1.31471 1.10688 1.28189 0.86461 0.89664 1.02450 1.74414 1.23123 1.24208 0.98459 1.78031 1.10124 1.04410 1.14048 1.82816 1.05291 1.19379 0.97793 1.20628 0.94765 0.98349 0.91695 0.88431 0.86198 0.85816 0.90570 0.87484 0.95611 0.97981 0.92421 0.81667 0.79368 0.90186 0.86634 0.90368 0.71046 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 14.32 67.78 0.97 -2.14 16 2 C -0.19 -4.19 8.56 25.65 0.22 -3.97 16 3 C 0.13 3.44 5.34 85.64 0.46 3.90 16 4 N -0.59 -22.68 2.45 -834.19 -2.04 -24.72 16 5 C 0.26 13.38 5.21 85.63 0.45 13.83 16 6 C -0.55 -29.70 9.39 25.60 0.24 -29.46 16 7 H 0.06 3.02 7.81 -2.91 -0.02 3.00 16 8 C 0.01 0.70 5.46 84.66 0.46 1.16 16 9 N -0.93 -53.99 13.29 21.45 0.28 -53.71 16 10 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 11 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 C 0.55 21.00 7.22 86.72 0.63 21.62 16 15 O -0.59 -28.31 16.58 -3.97 -0.07 -28.38 16 16 C -0.15 -3.90 4.96 -20.09 -0.10 -4.00 16 17 C -0.03 -0.61 7.47 22.52 0.17 -0.44 16 18 C -0.18 -2.40 9.01 22.31 0.20 -2.20 16 19 C 0.17 3.13 6.71 22.73 0.15 3.28 16 20 O -0.31 -5.64 8.65 -90.62 -0.78 -6.43 16 21 C 0.01 0.08 9.81 113.37 1.11 1.19 16 22 C 0.07 1.59 6.71 38.10 0.26 1.84 16 23 N -0.31 -7.85 3.86 -190.85 -0.74 -8.59 16 24 C 0.23 5.12 12.15 180.19 2.19 7.31 16 25 N -0.35 -9.87 12.15 -60.14 -0.73 -10.60 16 26 N -0.07 -2.17 13.39 37.02 0.50 -1.68 16 27 N -0.07 -1.93 12.08 37.02 0.45 -1.48 16 28 C -0.03 -0.80 9.15 22.62 0.21 -0.59 16 29 H 0.10 1.97 7.85 -2.91 -0.02 1.94 16 30 H 0.12 1.79 8.06 -2.91 -0.02 1.77 16 31 H 0.12 2.29 6.51 -2.91 -0.02 2.27 16 32 H 0.08 2.27 7.78 -2.39 -0.02 2.25 16 33 H 0.11 2.34 5.26 -2.39 -0.01 2.32 16 34 H 0.03 1.33 8.07 -2.38 -0.02 1.32 16 35 H 0.00 0.12 7.35 -2.39 -0.02 0.10 16 36 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.17 2.54 4.14 -2.91 -0.01 2.53 16 38 H 0.19 1.00 6.27 -2.91 -0.02 0.98 16 39 H 0.08 0.34 7.65 -2.38 -0.02 0.33 16 40 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.08 0.35 7.65 -2.39 -0.02 0.34 16 42 H 0.27 3.65 7.19 -2.91 -0.02 3.63 16 43 H 0.15 3.48 6.87 -2.91 -0.02 3.46 16 Total: -1.00 -79.38 369.68 7.57 -71.81 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: 1.07 Total: 7.36 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 7.61 Total: 11.34 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.28 Total: -100.76 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.85 Total: -34.80 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -79.38 7.57 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359414828.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.001 kcal (2) G-P(sol) polarization free energy of solvation -79.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds