Wall clock time and date at job start Wed Apr 1 2020 02:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34780 * 120.00377 * 2 1 4 4 O 1.21667 * 119.99533 * 0.02562 * 3 2 1 5 5 C 1.46962 * 120.00263 * 179.97438 * 3 2 1 6 6 N 1.34559 * 125.96373 * 0.17510 * 5 3 2 7 7 N 1.28666 * 109.73784 * 180.29219 * 6 5 3 8 8 N 1.40148 * 108.86833 * 359.72313 * 7 6 5 9 9 H 0.96996 * 126.55773 * 179.97438 * 8 7 6 10 10 C 1.35339 * 106.89025 * 0.02562 * 8 7 6 11 11 N 1.38505 * 126.78713 * 179.97438 * 10 8 7 12 12 C 1.34776 * 119.99756 * 0.02562 * 11 10 8 13 13 O 1.21267 * 119.99940 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.99866 * 179.97438 * 12 11 10 15 15 C 1.53002 * 109.47070 * 180.02562 * 14 12 11 16 16 H 1.09007 * 109.46917 * 305.37219 * 15 14 12 17 17 C 1.50697 * 109.47176 * 65.36736 * 15 14 12 18 18 H 1.08006 * 120.00073 * 34.62267 * 17 15 14 19 19 C 1.37873 * 120.00151 * 214.62088 * 17 15 14 20 20 N 1.31516 * 119.99841 * 186.45364 * 19 17 15 21 21 Si 1.86800 * 120.00035 * 6.44725 * 19 17 15 22 22 H 1.48504 * 109.47085 * 85.00991 * 21 19 17 23 23 H 1.48496 * 109.47009 * 205.00807 * 21 19 17 24 24 H 1.48498 * 109.47189 * 325.01255 * 21 19 17 25 25 C 1.50698 * 109.47095 * 185.37244 * 15 14 12 26 26 C 1.38239 * 119.99546 * 296.35782 * 25 15 14 27 27 C 1.38239 * 119.99533 * 179.78899 * 26 25 15 28 28 C 1.38233 * 119.99961 * 0.44305 * 27 26 25 29 29 C 1.38234 * 120.00362 * 359.80747 * 28 27 26 30 30 C 1.38230 * 120.00442 * 116.63134 * 25 15 14 31 31 H 1.09004 * 109.46724 * 300.00146 * 1 2 3 32 32 H 1.08993 * 109.47039 * 59.99914 * 1 2 3 33 33 H 1.08997 * 109.47476 * 180.02562 * 1 2 3 34 34 H 0.97004 * 120.00018 * 180.02562 * 2 1 3 35 35 H 0.97002 * 120.00089 * 180.02562 * 11 10 8 36 36 H 1.09005 * 109.46926 * 60.00058 * 14 12 11 37 37 H 1.08999 * 109.46933 * 300.00090 * 14 12 11 38 38 H 0.97002 * 119.99757 * 180.02562 * 20 19 17 39 39 H 1.07998 * 120.00160 * 359.97438 * 26 25 15 40 40 H 1.08000 * 119.99653 * 180.27359 * 27 26 25 41 41 H 1.07999 * 119.99753 * 179.83453 * 28 27 26 42 42 H 1.07994 * 120.00427 * 180.02562 * 29 28 27 43 43 H 1.08006 * 119.99413 * 359.97438 * 30 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 1.5306 2.2208 0.0005 5 6 3.6086 1.1672 0.0006 6 7 4.3988 0.0780 -0.0022 7 7 5.6342 0.4375 0.0055 8 7 5.6989 1.8375 0.0075 9 1 6.5038 2.3787 0.0132 10 6 4.4234 2.2900 0.0011 11 7 4.0126 3.6128 0.0010 12 6 4.9275 4.6025 0.0072 13 8 6.1102 4.3348 0.0124 14 6 4.4805 6.0417 0.0065 15 6 5.7069 6.9566 0.0136 16 1 6.3496 6.6961 0.8546 17 6 6.4701 6.7837 -1.2742 18 1 5.9394 6.5897 -2.1947 19 6 7.8460 6.8730 -1.2775 20 7 8.5037 6.8492 -2.4162 21 14 8.7758 7.0281 0.3352 22 1 9.0072 5.6764 0.9050 23 1 10.0811 7.6929 0.0920 24 1 7.9780 7.8380 1.2906 25 6 5.2631 8.3906 0.1459 26 6 4.4976 8.9717 -0.8478 27 6 4.0868 10.2858 -0.7244 28 6 4.4491 11.0216 0.3884 29 6 5.2189 10.4422 1.3796 30 6 5.6260 9.1268 1.2582 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.0665 3.8268 -0.0035 36 1 3.8772 6.2353 0.8935 37 1 3.8869 6.2374 -0.8865 38 1 9.4717 6.9117 -2.4185 39 1 4.2180 8.3980 -1.7191 40 1 3.4850 10.7384 -1.4986 41 1 4.1304 12.0491 0.4835 42 1 5.5016 11.0169 2.2491 43 1 6.2275 8.6739 2.0326 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411095648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:21 Heat of formation + Delta-G solvation = 20.449785 kcal Electronic energy + Delta-G solvation = -29359.755181 eV Core-core repulsion = 25212.877784 eV Total energy + Delta-G solvation = -4146.877397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.51914 -41.23305 -40.36653 -39.93220 -36.77932 -35.93549 -35.53040 -34.12386 -33.70868 -31.73321 -31.57524 -30.38016 -28.25234 -27.61941 -25.07940 -24.45215 -23.83068 -23.29858 -22.20234 -21.84830 -20.97266 -19.91762 -19.07175 -18.49951 -18.37936 -17.48810 -17.38952 -17.17073 -16.67341 -16.55184 -16.32154 -15.90464 -15.67915 -15.47542 -15.14467 -15.02571 -14.69354 -14.22244 -14.00628 -13.81762 -13.77917 -13.54384 -13.37556 -13.06282 -13.04955 -12.79305 -12.73132 -12.70917 -12.13903 -11.93548 -11.86044 -11.62711 -11.59047 -11.46296 -11.25575 -11.05823 -10.62435 -10.22271 -9.69160 -9.61262 -9.32327 -8.25524 -6.23995 -0.12051 0.45875 0.68365 0.71845 0.89742 1.32871 1.37203 1.40461 1.43772 1.82118 2.14853 2.18360 2.38153 3.05681 3.08685 3.21933 3.47907 3.59718 3.77952 4.06989 4.23363 4.30218 4.33100 4.38412 4.47326 4.53358 4.57973 4.70957 4.72432 4.80042 4.84840 4.98831 5.03343 5.14865 5.35033 5.36561 5.39913 5.62809 5.73193 5.77839 5.81677 5.96350 6.00525 6.30548 6.35646 6.36206 6.71750 6.77444 6.79953 7.08531 7.41208 8.90617 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012308 B = 0.003328 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.465082 B = 8410.834594 C =10032.167587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.708 5.708 3 C 0.611 3.389 4 O -0.567 6.567 5 C -0.154 4.154 6 N -0.181 5.181 7 N -0.077 5.077 8 N -0.462 5.462 9 H 0.458 0.542 10 C 0.372 3.628 11 N -0.623 5.623 12 C 0.521 3.479 13 O -0.523 6.523 14 C -0.111 4.111 15 C 0.057 3.943 16 H 0.040 0.960 17 C -0.474 4.474 18 H 0.039 0.961 19 C 0.029 3.971 20 N -0.949 5.949 21 Si 0.918 3.082 22 H -0.280 1.280 23 H -0.303 1.303 24 H -0.230 1.230 25 C -0.063 4.063 26 C -0.118 4.118 27 C -0.127 4.127 28 C -0.140 4.140 29 C -0.126 4.126 30 C -0.151 4.151 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.419 0.581 35 H 0.449 0.551 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.259 0.741 39 H 0.113 0.887 40 H 0.138 0.862 41 H 0.144 0.856 42 H 0.138 0.862 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.027 -5.903 8.603 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.358 5.358 3 C 0.396 3.604 4 O -0.446 6.446 5 C -0.298 4.298 6 N -0.055 5.055 7 N -0.060 5.060 8 N -0.187 5.187 9 H 0.313 0.687 10 C 0.133 3.867 11 N -0.278 5.278 12 C 0.312 3.688 13 O -0.395 6.395 14 C -0.150 4.150 15 C 0.038 3.962 16 H 0.059 0.941 17 C -0.512 4.512 18 H 0.057 0.943 19 C -0.168 4.168 20 N -0.590 5.590 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.231 1.231 24 H -0.154 1.154 25 C -0.064 4.064 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.158 4.158 29 C -0.144 4.144 30 C -0.169 4.169 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.255 0.745 35 H 0.294 0.706 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.131 0.869 40 H 0.155 0.845 41 H 0.162 0.838 42 H 0.156 0.844 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.761 -6.578 8.536 19.093 hybrid contribution 1.211 0.810 0.026 1.457 sum -14.549 -5.768 8.562 17.840 Atomic orbital electron populations 1.21814 0.77035 1.04725 1.02280 1.45488 1.08927 1.07926 1.73425 1.16436 0.83207 0.84856 0.75903 1.90725 1.68716 1.31926 1.53242 1.21170 0.95683 0.86966 1.25967 1.74424 0.97581 1.25010 1.08483 1.81866 1.12046 0.86441 1.25686 1.48552 1.07640 1.08362 1.54139 0.68712 1.19124 0.85956 0.87310 0.94266 1.43546 1.13697 0.99773 1.70769 1.21823 0.85026 0.88967 0.73015 1.90567 1.18557 1.83674 1.46707 1.21733 1.00417 0.86846 1.06035 1.18030 0.92977 0.88502 0.96715 0.94139 1.20825 0.91002 1.46204 0.93121 0.94295 1.25583 0.98850 0.94318 0.98041 1.70037 1.07886 1.53416 1.27639 0.86199 0.77987 0.78593 0.82749 1.20604 1.23074 1.15357 1.20408 0.94992 0.97477 0.93521 1.21037 0.98608 0.95874 0.98065 1.21400 1.00427 0.93975 0.98650 1.21336 0.99467 1.00664 0.94321 1.21331 0.98465 0.94566 1.00002 1.21265 1.01639 0.95797 0.98210 0.92110 0.92311 0.86960 0.74504 0.70566 0.85868 0.86989 0.93227 0.86922 0.84459 0.83829 0.84394 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.95 10.70 127.77 1.37 2.32 16 2 N -0.71 -11.91 5.71 -488.32 -2.79 -14.69 16 3 C 0.61 14.83 7.80 86.53 0.67 15.51 16 4 O -0.57 -15.49 15.09 -4.24 -0.06 -15.56 16 5 C -0.15 -4.25 7.05 41.13 0.29 -3.96 16 6 N -0.18 -5.09 12.03 -49.05 -0.59 -5.68 16 7 N -0.08 -2.43 13.85 37.02 0.51 -1.92 16 8 N -0.46 -14.97 7.04 -54.33 -0.38 -15.35 16 9 H 0.46 15.78 6.56 -213.29 -1.40 14.38 16 10 C 0.37 11.32 7.77 132.24 1.03 12.34 16 11 N -0.62 -17.70 5.36 -307.31 -1.65 -19.34 16 12 C 0.52 17.70 7.54 87.66 0.66 18.36 16 13 O -0.52 -21.86 12.59 -2.99 -0.04 -21.90 16 14 C -0.11 -3.49 4.94 29.85 0.15 -3.34 16 15 C 0.06 2.34 1.28 -12.29 -0.02 2.32 16 16 H 0.04 1.74 4.79 -2.38 -0.01 1.73 16 17 C -0.47 -24.65 6.94 25.60 0.18 -24.47 16 18 H 0.04 2.24 8.06 -2.91 -0.02 2.22 16 19 C 0.03 1.66 5.47 84.65 0.46 2.12 16 20 N -0.95 -59.01 13.96 21.45 0.30 -58.71 16 21 Si 0.92 44.75 27.04 68.60 1.85 46.60 16 22 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 24 H -0.23 -9.98 5.15 99.48 0.51 -9.47 16 25 C -0.06 -2.38 4.77 -19.87 -0.09 -2.47 16 26 C -0.12 -4.10 8.87 22.27 0.20 -3.91 16 27 C -0.13 -3.67 10.05 22.27 0.22 -3.45 16 28 C -0.14 -3.71 10.05 22.27 0.22 -3.48 16 29 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 30 C -0.15 -5.19 9.13 22.27 0.20 -4.99 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.42 5.74 8.51 -92.71 -0.79 4.95 16 35 H 0.45 10.89 6.85 -92.71 -0.63 10.25 16 36 H 0.12 2.95 8.14 -2.38 -0.02 2.93 16 37 H 0.11 3.26 7.80 -2.39 -0.02 3.25 16 38 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.11 3.98 7.77 -2.91 -0.02 3.96 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.11 3.75 6.96 -2.91 -0.02 3.73 16 Total: -1.00 -71.92 366.77 1.01 -70.90 By element: Atomic # 1 Polarization: 38.03 SS G_CDS: -1.91 Total: 36.11 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 5.77 Total: -0.47 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.60 Total: -115.70 kcal Atomic # 8 Polarization: -37.35 SS G_CDS: -0.10 Total: -37.45 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.85 Total: 46.60 kcal Total: -71.92 1.01 -70.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411095648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.350 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds