Wall clock time and date at job start Wed Apr 1 2020 02:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00239 * 2 1 4 4 O 1.21672 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.46965 * 120.00319 * 180.02562 * 3 2 1 6 6 N 1.34559 * 125.95857 * 0.13753 * 5 3 2 7 7 N 1.28670 * 109.73340 * 180.27150 * 6 5 3 8 8 N 1.40145 * 108.87163 * 359.75935 * 7 6 5 9 9 H 0.96998 * 126.56074 * 179.97438 * 8 7 6 10 10 C 1.35340 * 106.88484 * 0.02562 * 8 7 6 11 11 N 1.38509 * 126.78008 * 179.97438 * 10 8 7 12 12 C 1.34781 * 120.00498 * 0.02562 * 11 10 8 13 13 O 1.21264 * 119.99548 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46932 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.46947 * 55.00183 * 15 14 12 17 17 C 1.50696 * 109.47470 * 295.00310 * 15 14 12 18 18 H 1.08006 * 119.99994 * 325.12789 * 17 15 14 19 19 C 1.37874 * 120.00268 * 145.12587 * 17 15 14 20 20 N 1.31518 * 119.99722 * 184.98945 * 19 17 15 21 21 Si 1.86797 * 120.00125 * 4.98942 * 19 17 15 22 22 H 1.48495 * 109.47033 * 84.72874 * 21 19 17 23 23 H 1.48498 * 109.46960 * 204.73068 * 21 19 17 24 24 H 1.48501 * 109.46796 * 324.72674 * 21 19 17 25 25 C 1.50698 * 109.47074 * 175.00106 * 15 14 12 26 26 C 1.38235 * 119.99994 * 64.69343 * 25 15 14 27 27 C 1.38231 * 119.99645 * 179.79003 * 26 25 15 28 28 C 1.38234 * 120.00299 * 0.44105 * 27 26 25 29 29 C 1.38231 * 120.00055 * 359.80941 * 28 27 26 30 30 C 1.38233 * 119.99691 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46620 * 299.99792 * 1 2 3 32 32 H 1.09000 * 109.46960 * 59.99455 * 1 2 3 33 33 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 34 34 H 0.97004 * 119.99707 * 180.02562 * 2 1 3 35 35 H 0.97001 * 119.99968 * 179.74962 * 11 10 8 36 36 H 1.09004 * 109.47104 * 300.00234 * 14 12 11 37 37 H 1.08998 * 109.46902 * 60.00082 * 14 12 11 38 38 H 0.96998 * 119.99612 * 180.02562 * 20 19 17 39 39 H 1.07997 * 119.99687 * 359.97438 * 26 25 15 40 40 H 1.08008 * 119.99667 * 180.27428 * 27 26 25 41 41 H 1.08008 * 120.00170 * 179.83810 * 28 27 26 42 42 H 1.07995 * 120.00298 * 180.02562 * 29 28 27 43 43 H 1.08005 * 119.99917 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5306 2.2209 0.0005 5 6 3.6086 1.1672 -0.0006 6 7 4.3987 0.0780 -0.0037 7 7 5.6342 0.4375 0.0025 8 7 5.6989 1.8375 0.0047 9 1 6.5038 2.3787 0.0095 10 6 4.4234 2.2900 0.0000 11 7 4.0127 3.6128 0.0006 12 6 4.9275 4.6025 0.0059 13 8 6.1102 4.3349 0.0095 14 6 4.4805 6.0417 0.0060 15 6 5.7069 6.9565 0.0118 16 1 6.3538 6.7024 -0.8280 17 6 6.4638 6.7740 1.3020 18 1 5.9282 6.5772 2.2191 19 6 7.8399 6.8581 1.3119 20 7 8.5064 6.6022 2.4164 21 14 8.7577 7.3355 -0.2435 22 1 8.8044 8.8155 -0.3561 23 1 10.1413 6.7995 -0.1860 24 1 8.0568 6.7710 -1.4247 25 6 5.2637 8.3916 -0.1119 26 6 4.5117 8.9717 0.8924 27 6 4.1089 10.2893 0.7809 28 6 4.4503 11.0241 -0.3391 29 6 5.1979 10.4424 -1.3459 30 6 5.6045 9.1261 -1.2323 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.0666 3.8269 -0.0067 36 1 3.8858 6.2376 -0.8863 37 1 3.8784 6.2351 0.8937 38 1 9.4745 6.6617 2.4234 39 1 4.2415 8.3964 1.7655 40 1 3.5251 10.7440 1.5677 41 1 4.1333 12.0528 -0.4275 42 1 5.4650 11.0165 -2.2207 43 1 6.1883 8.6715 -2.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411095649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:26 Heat of formation + Delta-G solvation = 44.382018 kcal Electronic energy + Delta-G solvation = -29356.158590 eV Core-core repulsion = 25210.318972 eV Total energy + Delta-G solvation = -4145.839618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.29219 -39.84171 -39.36428 -38.61540 -35.47946 -34.63002 -34.32760 -32.82805 -31.86538 -30.50147 -30.31011 -29.09099 -27.15759 -26.19139 -23.67175 -23.20367 -22.57046 -21.99122 -20.90976 -20.77349 -19.48147 -18.82223 -17.28729 -17.17959 -17.02016 -16.29827 -16.23825 -16.01248 -15.56227 -15.17652 -14.79642 -14.68896 -14.28904 -14.13226 -14.05936 -13.66482 -13.04036 -12.88714 -12.77646 -12.57171 -12.51092 -12.36469 -12.29367 -12.05739 -11.60815 -11.50902 -11.35551 -10.93954 -10.64774 -10.53936 -10.44040 -10.33723 -10.12069 -9.87731 -9.70152 -9.36703 -9.26968 -8.63358 -8.49328 -8.34082 -7.96523 -6.15732 -4.15313 1.13547 1.62404 1.96625 2.00301 2.13190 2.76620 3.01534 3.18336 3.25504 3.27529 3.31093 3.34238 4.24988 4.36143 4.42175 4.52203 4.84052 4.98320 5.02427 5.22824 5.28986 5.39871 5.44259 5.49940 5.54147 5.60941 5.67448 5.73153 5.88872 5.93249 6.09658 6.16887 6.18116 6.35973 6.54213 6.68101 6.82366 7.02870 7.03653 7.10541 7.19323 7.24438 7.40325 7.55566 7.66412 7.91899 8.06024 8.09475 8.34022 8.82398 9.47115 10.96732 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.003305 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.933630 B = 8469.129115 C =10075.553101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.721 5.721 3 C 0.616 3.384 4 O -0.550 6.550 5 C -0.164 4.164 6 N -0.188 5.188 7 N -0.064 5.064 8 N -0.456 5.456 9 H 0.462 0.538 10 C 0.388 3.612 11 N -0.640 5.640 12 C 0.519 3.481 13 O -0.481 6.481 14 C -0.112 4.112 15 C 0.046 3.954 16 H 0.060 0.940 17 C -0.497 4.497 18 H 0.074 0.926 19 C 0.089 3.911 20 N -0.893 5.893 21 Si 0.869 3.131 22 H -0.274 1.274 23 H -0.290 1.290 24 H -0.262 1.262 25 C -0.043 4.043 26 C -0.101 4.101 27 C -0.125 4.125 28 C -0.147 4.147 29 C -0.124 4.124 30 C -0.139 4.139 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.439 0.561 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.264 0.736 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.212 -6.191 -6.727 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.372 5.372 3 C 0.403 3.597 4 O -0.427 6.427 5 C -0.307 4.307 6 N -0.063 5.063 7 N -0.047 5.047 8 N -0.182 5.182 9 H 0.318 0.682 10 C 0.149 3.851 11 N -0.294 5.294 12 C 0.309 3.691 13 O -0.349 6.349 14 C -0.152 4.152 15 C 0.027 3.973 16 H 0.078 0.922 17 C -0.534 4.534 18 H 0.092 0.908 19 C -0.115 4.115 20 N -0.529 5.529 21 Si 0.698 3.302 22 H -0.200 1.200 23 H -0.216 1.216 24 H -0.187 1.187 25 C -0.044 4.044 26 C -0.119 4.119 27 C -0.143 4.143 28 C -0.165 4.165 29 C -0.142 4.142 30 C -0.157 4.157 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.245 0.755 35 H 0.282 0.718 36 H 0.102 0.898 37 H 0.117 0.883 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.859 -6.841 -6.623 16.001 hybrid contribution 0.533 1.308 -0.598 1.534 sum -12.326 -5.532 -7.221 15.319 Atomic orbital electron populations 1.21573 0.78974 1.02379 1.02538 1.45452 1.07720 1.08683 1.75366 1.16486 0.83859 0.84039 0.75359 1.90738 1.68761 1.31143 1.52097 1.20842 0.94826 0.87587 1.27460 1.74445 0.97891 1.25113 1.08855 1.81855 1.11471 0.86557 1.24793 1.48532 1.07436 1.08236 1.54044 0.68179 1.18895 0.85930 0.86823 0.93409 1.43836 1.13676 1.00375 1.71524 1.21658 0.85386 0.88231 0.73860 1.90571 1.16893 1.83049 1.44401 1.21740 1.01649 0.88376 1.03443 1.18325 0.92266 0.86091 1.00631 0.92192 1.20617 0.91286 1.49023 0.92479 0.90840 1.24874 0.97454 0.93572 0.95566 1.69879 1.07740 1.48055 1.27261 0.86988 0.79193 0.79169 0.84896 1.19978 1.21643 1.18728 1.20668 0.93044 0.98664 0.91976 1.20978 0.97857 0.94529 0.98517 1.21082 1.00792 0.94860 0.97587 1.20896 1.01144 0.99268 0.95183 1.20971 0.99182 0.95271 0.98765 1.21071 1.01713 0.94738 0.98209 0.91953 0.92010 0.90506 0.75455 0.71776 0.89787 0.88331 0.92589 0.86096 0.87018 0.87271 0.87226 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 10.70 59.85 0.64 1.27 16 2 N -0.72 -6.91 5.71 -68.32 -0.39 -7.30 16 3 C 0.62 8.00 7.80 -12.73 -0.10 7.91 16 4 O -0.55 -7.98 15.09 5.21 0.08 -7.90 16 5 C -0.16 -2.35 7.05 -82.96 -0.59 -2.93 16 6 N -0.19 -2.73 12.03 33.14 0.40 -2.33 16 7 N -0.06 -1.00 13.85 60.35 0.84 -0.16 16 8 N -0.46 -7.31 7.04 31.48 0.22 -7.09 16 9 H 0.46 7.68 6.56 -182.56 -1.20 6.49 16 10 C 0.39 5.99 7.77 -153.08 -1.19 4.80 16 11 N -0.64 -9.35 5.36 -11.07 -0.06 -9.41 16 12 C 0.52 8.94 7.54 -10.98 -0.08 8.85 16 13 O -0.48 -9.91 12.58 5.57 0.07 -9.84 16 14 C -0.11 -1.83 4.96 -27.88 -0.14 -1.97 16 15 C 0.05 0.95 1.21 -92.93 -0.11 0.84 16 16 H 0.06 1.33 4.70 -51.93 -0.24 1.08 16 17 C -0.50 -12.57 6.87 -34.44 -0.24 -12.81 16 18 H 0.07 2.02 8.06 -52.48 -0.42 1.60 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 21 Si 0.87 21.29 27.15 -169.99 -4.62 16.67 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.26 -6.09 6.06 56.52 0.34 -5.74 16 25 C -0.04 -0.83 4.55 -104.62 -0.48 -1.30 16 26 C -0.10 -1.81 8.87 -39.58 -0.35 -2.16 16 27 C -0.13 -1.99 10.05 -39.59 -0.40 -2.39 16 28 C -0.15 -2.24 10.05 -39.59 -0.40 -2.63 16 29 C -0.12 -1.98 10.05 -39.59 -0.40 -2.38 16 30 C -0.14 -2.53 9.43 -39.58 -0.37 -2.90 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.41 3.32 8.51 -40.82 -0.35 2.97 16 35 H 0.44 5.64 6.85 -40.82 -0.28 5.36 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.49 7.86 -51.93 -0.41 1.08 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.12 2.13 7.80 -52.49 -0.41 1.72 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 41 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.11 1.91 7.95 -52.48 -0.42 1.49 16 LS Contribution 368.74 15.07 5.56 5.56 Total: -1.00 -31.81 368.74 -7.30 -39.11 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.88 Total: 13.79 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -4.29 Total: -5.46 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 1.78 Total: -51.94 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: 0.15 Total: -17.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.62 Total: 16.67 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.81 -7.30 -39.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411095649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.490 kcal (2) G-P(sol) polarization free energy of solvation -31.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds