Wall clock time and date at job start Wed Apr 1 2020 02:04:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00239 * 2 1 4 4 O 1.21672 * 120.00047 * 0.02562 * 3 2 1 5 5 C 1.46965 * 120.00319 * 180.02562 * 3 2 1 6 6 N 1.34559 * 125.95857 * 0.13753 * 5 3 2 7 7 N 1.28670 * 109.73340 * 180.27150 * 6 5 3 8 8 N 1.40145 * 108.87163 * 359.75935 * 7 6 5 9 9 H 0.96998 * 126.56074 * 179.97438 * 8 7 6 10 10 C 1.35340 * 106.88484 * 0.02562 * 8 7 6 11 11 N 1.38509 * 126.78008 * 179.97438 * 10 8 7 12 12 C 1.34781 * 120.00498 * 0.02562 * 11 10 8 13 13 O 1.21264 * 119.99548 * 0.02562 * 12 11 10 14 14 C 1.50700 * 120.00188 * 179.97438 * 12 11 10 15 15 C 1.52998 * 109.46932 * 180.02562 * 14 12 11 16 16 H 1.09005 * 109.46947 * 55.00183 * 15 14 12 17 17 C 1.50696 * 109.47470 * 295.00310 * 15 14 12 18 18 H 1.08006 * 119.99994 * 325.12789 * 17 15 14 19 19 C 1.37874 * 120.00268 * 145.12587 * 17 15 14 20 20 N 1.31518 * 119.99722 * 184.98945 * 19 17 15 21 21 Si 1.86797 * 120.00125 * 4.98942 * 19 17 15 22 22 H 1.48495 * 109.47033 * 84.72874 * 21 19 17 23 23 H 1.48498 * 109.46960 * 204.73068 * 21 19 17 24 24 H 1.48501 * 109.46796 * 324.72674 * 21 19 17 25 25 C 1.50698 * 109.47074 * 175.00106 * 15 14 12 26 26 C 1.38235 * 119.99994 * 64.69343 * 25 15 14 27 27 C 1.38231 * 119.99645 * 179.79003 * 26 25 15 28 28 C 1.38234 * 120.00299 * 0.44105 * 27 26 25 29 29 C 1.38231 * 120.00055 * 359.80941 * 28 27 26 30 30 C 1.38233 * 119.99691 * 359.97438 * 29 28 27 31 31 H 1.09001 * 109.46620 * 299.99792 * 1 2 3 32 32 H 1.09000 * 109.46960 * 59.99455 * 1 2 3 33 33 H 1.08996 * 109.47166 * 179.97438 * 1 2 3 34 34 H 0.97004 * 119.99707 * 180.02562 * 2 1 3 35 35 H 0.97001 * 119.99968 * 179.74962 * 11 10 8 36 36 H 1.09004 * 109.47104 * 300.00234 * 14 12 11 37 37 H 1.08998 * 109.46902 * 60.00082 * 14 12 11 38 38 H 0.96998 * 119.99612 * 180.02562 * 20 19 17 39 39 H 1.07997 * 119.99687 * 359.97438 * 26 25 15 40 40 H 1.08008 * 119.99667 * 180.27428 * 27 26 25 41 41 H 1.08008 * 120.00170 * 179.83810 * 28 27 26 42 42 H 1.07995 * 120.00298 * 180.02562 * 29 28 27 43 43 H 1.08005 * 119.99917 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5306 2.2209 0.0005 5 6 3.6086 1.1672 -0.0006 6 7 4.3987 0.0780 -0.0037 7 7 5.6342 0.4375 0.0025 8 7 5.6989 1.8375 0.0047 9 1 6.5038 2.3787 0.0095 10 6 4.4234 2.2900 0.0000 11 7 4.0127 3.6128 0.0006 12 6 4.9275 4.6025 0.0059 13 8 6.1102 4.3349 0.0095 14 6 4.4805 6.0417 0.0060 15 6 5.7069 6.9565 0.0118 16 1 6.3538 6.7024 -0.8280 17 6 6.4638 6.7740 1.3020 18 1 5.9282 6.5772 2.2191 19 6 7.8399 6.8581 1.3119 20 7 8.5064 6.6022 2.4164 21 14 8.7577 7.3355 -0.2435 22 1 8.8044 8.8155 -0.3561 23 1 10.1413 6.7995 -0.1860 24 1 8.0568 6.7710 -1.4247 25 6 5.2637 8.3916 -0.1119 26 6 4.5117 8.9717 0.8924 27 6 4.1089 10.2893 0.7809 28 6 4.4503 11.0241 -0.3391 29 6 5.1979 10.4424 -1.3459 30 6 5.6045 9.1261 -1.2323 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.9500 -0.8401 -0.0004 35 1 3.0666 3.8269 -0.0067 36 1 3.8858 6.2376 -0.8863 37 1 3.8784 6.2351 0.8937 38 1 9.4745 6.6617 2.4234 39 1 4.2415 8.3964 1.7655 40 1 3.5251 10.7440 1.5677 41 1 4.1333 12.0528 -0.4275 42 1 5.4650 11.0165 -2.2207 43 1 6.1883 8.6715 -2.0191 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411095649.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:25 Heat of formation + Delta-G solvation = 21.291459 kcal Electronic energy + Delta-G solvation = -29357.159872 eV Core-core repulsion = 25210.318972 eV Total energy + Delta-G solvation = -4146.840899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.50999 -41.22001 -40.36250 -39.94286 -36.76955 -35.93514 -35.52630 -34.11595 -33.70819 -31.72852 -31.58517 -30.38237 -28.25232 -27.61962 -25.07663 -24.44861 -23.82800 -23.29539 -22.20076 -21.84289 -20.97949 -19.91054 -19.08797 -18.49154 -18.37651 -17.47628 -17.39086 -17.16974 -16.66726 -16.53085 -16.30623 -15.92291 -15.68842 -15.49071 -15.14931 -15.02157 -14.71097 -14.21546 -13.96371 -13.82819 -13.80771 -13.54080 -13.40522 -13.14314 -13.04909 -12.82740 -12.74735 -12.70090 -12.11442 -11.90121 -11.88145 -11.64356 -11.58039 -11.45775 -11.19638 -11.05990 -10.66146 -10.22013 -9.68396 -9.63557 -9.33754 -8.25541 -6.24007 -0.11014 0.46488 0.66403 0.70355 0.90706 1.31363 1.31942 1.37377 1.45054 1.83029 2.15208 2.18875 2.35800 3.05189 3.09415 3.18672 3.48513 3.60841 3.78933 4.06886 4.22957 4.29276 4.33279 4.37990 4.46224 4.53730 4.56734 4.71689 4.72542 4.80226 4.84204 4.97767 5.03413 5.15389 5.33952 5.36721 5.39086 5.63197 5.74312 5.76118 5.80417 5.97267 5.99269 6.30086 6.34545 6.36492 6.73038 6.77581 6.80760 7.08839 7.40585 8.90889 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012475 B = 0.003305 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.933630 B = 8469.129115 C =10075.553101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.708 5.708 3 C 0.611 3.389 4 O -0.567 6.567 5 C -0.154 4.154 6 N -0.181 5.181 7 N -0.077 5.077 8 N -0.461 5.461 9 H 0.459 0.541 10 C 0.372 3.628 11 N -0.624 5.624 12 C 0.520 3.480 13 O -0.521 6.521 14 C -0.109 4.109 15 C 0.048 3.952 16 H 0.046 0.954 17 C -0.471 4.471 18 H 0.040 0.960 19 C 0.031 3.969 20 N -0.948 5.948 21 Si 0.917 3.083 22 H -0.270 1.270 23 H -0.301 1.301 24 H -0.244 1.244 25 C -0.065 4.065 26 C -0.118 4.118 27 C -0.125 4.125 28 C -0.140 4.140 29 C -0.125 4.125 30 C -0.155 4.155 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.419 0.581 35 H 0.448 0.552 36 H 0.123 0.877 37 H 0.112 0.888 38 H 0.259 0.741 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.939 -5.253 -8.474 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.358 5.358 3 C 0.396 3.604 4 O -0.446 6.446 5 C -0.298 4.298 6 N -0.055 5.055 7 N -0.060 5.060 8 N -0.186 5.186 9 H 0.313 0.687 10 C 0.133 3.867 11 N -0.278 5.278 12 C 0.310 3.690 13 O -0.393 6.393 14 C -0.148 4.148 15 C 0.029 3.971 16 H 0.064 0.936 17 C -0.509 4.509 18 H 0.058 0.942 19 C -0.166 4.166 20 N -0.589 5.589 21 Si 0.744 3.256 22 H -0.195 1.195 23 H -0.228 1.228 24 H -0.168 1.168 25 C -0.065 4.065 26 C -0.136 4.136 27 C -0.143 4.143 28 C -0.158 4.158 29 C -0.143 4.143 30 C -0.173 4.173 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.255 0.745 35 H 0.294 0.706 36 H 0.141 0.859 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.162 0.838 42 H 0.157 0.843 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.662 -5.947 -8.400 18.741 hybrid contribution 1.170 0.999 -0.044 1.539 sum -14.493 -4.948 -8.444 17.488 Atomic orbital electron populations 1.21815 0.77036 1.04726 1.02276 1.45486 1.08927 1.07922 1.73427 1.16437 0.83210 0.84854 0.75894 1.90725 1.68729 1.31926 1.53259 1.21166 0.95684 0.86974 1.26012 1.74425 0.97584 1.25000 1.08503 1.81862 1.12040 0.86459 1.25676 1.48551 1.07643 1.08347 1.54107 0.68683 1.19127 0.85974 0.87306 0.94258 1.43552 1.13680 0.99786 1.70820 1.21823 0.85053 0.88970 0.73106 1.90570 1.18554 1.83648 1.46500 1.21698 1.00316 0.86869 1.05946 1.18188 0.93292 0.88472 0.97178 0.93588 1.20834 0.90974 1.45790 0.93315 0.94200 1.25546 0.98732 0.94667 0.97703 1.70025 1.07561 1.51876 1.29461 0.86217 0.77625 0.78960 0.82842 1.19514 1.22817 1.16830 1.20440 0.95061 0.97488 0.93536 1.21049 0.98561 0.95836 0.98123 1.21415 1.00333 0.93926 0.98650 1.21347 0.99604 1.00719 0.94122 1.21339 0.98414 0.94502 0.99997 1.21226 1.02161 0.95884 0.98052 0.92320 0.92109 0.86951 0.74500 0.70608 0.85932 0.87043 0.93205 0.86833 0.84379 0.83765 0.84313 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.70 127.77 1.37 2.33 16 2 N -0.71 -12.04 5.71 -488.31 -2.79 -14.83 16 3 C 0.61 14.99 7.80 86.53 0.67 15.66 16 4 O -0.57 -15.65 15.09 -4.26 -0.06 -15.71 16 5 C -0.15 -4.31 7.05 41.13 0.29 -4.02 16 6 N -0.18 -5.14 12.03 -49.05 -0.59 -5.73 16 7 N -0.08 -2.45 13.85 37.02 0.51 -1.94 16 8 N -0.46 -15.09 7.04 -54.33 -0.38 -15.48 16 9 H 0.46 15.93 6.56 -213.29 -1.40 14.53 16 10 C 0.37 11.45 7.77 132.23 1.03 12.47 16 11 N -0.62 -17.97 5.36 -307.32 -1.65 -19.62 16 12 C 0.52 17.93 7.54 87.66 0.66 18.59 16 13 O -0.52 -22.08 12.58 -2.98 -0.04 -22.12 16 14 C -0.11 -3.46 4.96 29.85 0.15 -3.32 16 15 C 0.05 1.98 1.21 -12.29 -0.01 1.96 16 16 H 0.05 2.02 4.70 -2.38 -0.01 2.01 16 17 C -0.47 -24.58 6.87 25.60 0.18 -24.40 16 18 H 0.04 2.30 8.06 -2.91 -0.02 2.27 16 19 C 0.03 1.75 5.47 84.65 0.46 2.21 16 20 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 21 Si 0.92 44.89 27.15 68.60 1.86 46.76 16 22 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 24 H -0.24 -11.09 6.06 99.48 0.60 -10.48 16 25 C -0.06 -2.42 4.55 -19.87 -0.09 -2.51 16 26 C -0.12 -4.08 8.87 22.27 0.20 -3.88 16 27 C -0.13 -3.60 10.05 22.27 0.22 -3.38 16 28 C -0.14 -3.68 10.05 22.27 0.22 -3.45 16 29 C -0.12 -3.54 10.05 22.27 0.22 -3.32 16 30 C -0.16 -5.30 9.43 22.27 0.21 -5.09 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.42 5.82 8.51 -92.71 -0.79 5.03 16 35 H 0.45 11.05 6.85 -92.71 -0.63 10.41 16 36 H 0.12 2.98 8.14 -2.38 -0.02 2.96 16 37 H 0.11 3.28 7.86 -2.39 -0.02 3.26 16 38 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.11 3.99 7.80 -2.91 -0.02 3.97 16 40 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 41 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.06 16 43 H 0.11 3.66 7.95 -2.91 -0.02 3.64 16 Total: -1.00 -71.85 368.74 1.12 -70.72 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -1.82 Total: 36.70 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 5.78 Total: -0.12 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -4.60 Total: -116.22 kcal Atomic # 8 Polarization: -37.73 SS G_CDS: -0.10 Total: -37.83 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.86 Total: 46.76 kcal Total: -71.85 1.12 -70.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411095649.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.016 kcal (2) G-P(sol) polarization free energy of solvation -71.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds