Wall clock time and date at job start Wed Apr 1 2020 02:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35737 * 116.99902 * 2 1 4 4 C 1.38873 * 119.94102 * 359.97438 * 3 2 1 5 5 C 1.37748 * 120.15475 * 179.76213 * 4 3 2 6 6 C 1.39751 * 120.03655 * 0.51239 * 5 4 3 7 7 C 1.47616 * 120.06091 * 179.76725 * 6 5 4 8 8 O 1.21578 * 120.00172 * 184.88440 * 7 6 5 9 9 N 1.34782 * 119.99896 * 4.87336 * 7 6 5 10 10 C 1.46502 * 119.99900 * 185.07767 * 9 7 6 11 11 C 1.52998 * 109.46870 * 185.00036 * 10 9 7 12 12 C 1.50697 * 115.55234 * 54.23775 * 11 10 9 13 13 H 1.07998 * 120.00376 * 215.58912 * 12 11 10 14 14 C 1.37877 * 120.00011 * 35.31840 * 12 11 10 15 15 N 1.31516 * 119.99903 * 355.78295 * 14 12 11 16 16 Si 1.86799 * 120.00084 * 175.77813 * 14 12 11 17 17 H 1.48506 * 109.46688 * 90.00101 * 16 14 12 18 18 H 1.48497 * 109.47173 * 209.99718 * 16 14 12 19 19 H 1.48497 * 109.47113 * 330.00348 * 16 14 12 20 20 C 1.53003 * 117.49613 * 199.91215 * 11 10 9 21 21 C 1.53003 * 117.49603 * 268.56793 * 11 10 9 22 22 C 1.39650 * 119.87560 * 359.49228 * 6 5 4 23 23 C 1.38285 * 119.84857 * 0.24645 * 22 6 5 24 24 N 1.40361 * 120.02334 * 180.02562 * 23 22 6 25 25 C 1.35038 * 127.38344 * 359.71346 * 24 23 22 26 26 N 1.30752 * 107.27840 * 179.87365 * 25 24 23 27 27 N 1.28420 * 110.63939 * 0.40679 * 26 25 24 28 28 N 1.28944 * 110.19951 * 359.74551 * 27 26 25 29 29 H 1.08997 * 109.46681 * 299.99720 * 1 2 3 30 30 H 1.09001 * 109.47766 * 59.99529 * 1 2 3 31 31 H 1.09005 * 109.47278 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.91995 * 0.02562 * 4 3 2 33 33 H 1.08004 * 119.97862 * 180.25790 * 5 4 3 34 34 H 0.97007 * 119.99803 * 5.08361 * 9 7 6 35 35 H 1.08993 * 109.46641 * 64.99704 * 10 9 7 36 36 H 1.08997 * 109.46982 * 304.99796 * 10 9 7 37 37 H 0.97002 * 120.00199 * 185.00032 * 15 14 12 38 38 H 1.08997 * 117.49659 * 215.00496 * 20 11 10 39 39 H 1.09000 * 117.50051 * 0.02562 * 20 11 10 40 40 H 1.09000 * 117.50001 * 359.97438 * 21 11 10 41 41 H 1.08997 * 117.49884 * 144.97709 * 21 11 10 42 42 H 1.08008 * 120.07488 * 180.27819 * 22 6 5 43 43 H 1.08002 * 126.36074 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.2876 2.3733 -0.0005 5 6 1.9084 3.6030 0.0044 6 6 3.3036 3.6823 -0.0008 7 6 3.9694 4.9998 -0.0007 8 8 5.1795 5.0694 -0.0949 9 7 3.2357 6.1256 0.1036 10 6 3.8833 7.4350 -0.0080 11 6 2.8580 8.5362 0.2690 12 6 2.1150 8.4191 1.5749 13 1 1.0783 8.7157 1.6349 14 6 2.7572 7.9281 2.6918 15 7 3.9918 7.4846 2.5986 16 14 1.8738 7.8928 4.3373 17 1 1.1572 6.6007 4.4867 18 1 2.8641 8.0393 5.4341 19 1 0.8976 9.0102 4.3991 20 6 3.1790 9.9439 -0.2374 21 6 2.0968 9.1100 -0.9278 22 6 4.0668 2.5128 -0.0004 23 6 3.4386 1.2809 0.0001 24 7 4.2021 0.1032 0.0012 25 6 5.5484 -0.0011 -0.0036 26 7 5.8392 -1.2759 0.0023 27 7 4.7682 -1.9845 0.0019 28 7 3.7291 -1.2209 0.0012 29 1 -0.3632 0.5138 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 0.2092 2.3142 -0.0005 33 1 1.3164 4.5064 0.0082 34 1 2.2788 6.0688 0.2526 35 1 4.2850 7.5570 -1.0138 36 1 4.6938 7.5023 0.7177 37 1 4.4185 7.0727 3.3663 38 1 2.8529 10.7852 0.3740 39 1 4.1204 10.0852 -0.7683 40 1 2.3269 8.7032 -1.9126 41 1 1.0586 9.4024 -0.7708 42 1 5.1454 2.5704 0.0001 43 1 6.2540 0.8165 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431167807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:10:56 Heat of formation + Delta-G solvation = 115.608647 kcal Electronic energy + Delta-G solvation = -29452.454252 eV Core-core repulsion = 25309.703252 eV Total energy + Delta-G solvation = -4142.750999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.25551 -40.71978 -39.13393 -37.57716 -36.68333 -35.23612 -33.24901 -32.35653 -32.29669 -30.76430 -30.42664 -27.91353 -26.21291 -25.52595 -25.05723 -23.80480 -22.69899 -21.90702 -21.35082 -20.09897 -19.45601 -18.94330 -17.82630 -16.96194 -16.79591 -16.70992 -16.21887 -15.99578 -15.81020 -14.97893 -14.93232 -14.54236 -14.38690 -14.26681 -13.99176 -13.42652 -13.21912 -13.16357 -13.00205 -12.76873 -12.42957 -12.16554 -11.92250 -11.81950 -11.62845 -11.44515 -11.22507 -11.17164 -11.09480 -10.82981 -10.61584 -10.55430 -10.35691 -9.88209 -9.35982 -9.22887 -9.08598 -8.96517 -8.49091 -8.40594 -7.98948 -6.10622 -4.31380 0.19233 0.71064 1.39901 1.61607 2.17744 2.77341 2.95864 3.11740 3.23599 3.24649 3.70145 3.88669 3.96240 4.17371 4.20108 4.40946 4.50208 4.74823 4.81762 4.84048 4.85403 4.94797 4.97109 5.19459 5.22718 5.27607 5.32169 5.37276 5.72501 5.88553 5.90478 5.98892 6.07101 6.19227 6.25908 6.41572 6.49807 6.58551 6.78913 6.90037 6.96931 7.15158 7.41306 7.50037 7.85617 8.18521 8.31899 8.36152 8.70056 8.94761 9.32906 10.78228 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.013438 B = 0.003001 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.124490 B = 9327.762419 C = 9686.761213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.288 6.288 3 C 0.162 3.838 4 C -0.198 4.198 5 C -0.032 4.032 6 C -0.130 4.130 7 C 0.550 3.450 8 O -0.553 6.553 9 N -0.670 5.670 10 C 0.163 3.837 11 C 0.035 3.965 12 C -0.500 4.500 13 H 0.061 0.939 14 C 0.076 3.924 15 N -0.865 5.865 16 Si 0.892 3.108 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.198 4.198 21 C -0.213 4.213 22 C -0.028 4.028 23 C 0.080 3.920 24 N -0.313 5.313 25 C 0.220 3.780 26 N -0.333 5.333 27 N -0.052 5.052 28 N -0.054 5.054 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.397 0.603 35 H 0.021 0.979 36 H 0.121 0.879 37 H 0.264 0.736 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.093 -10.337 -5.624 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.199 6.199 3 C 0.112 3.888 4 C -0.217 4.217 5 C -0.051 4.051 6 C -0.135 4.135 7 C 0.335 3.665 8 O -0.434 6.434 9 N -0.317 5.317 10 C 0.041 3.959 11 C 0.034 3.966 12 C -0.538 4.538 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.501 5.501 16 Si 0.720 3.280 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.236 4.236 21 C -0.250 4.250 22 C -0.050 4.050 23 C -0.014 4.014 24 N -0.103 5.103 25 C -0.077 4.077 26 N -0.182 5.182 27 N -0.047 5.047 28 N -0.039 5.039 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.232 0.768 35 H 0.039 0.961 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.172 0.828 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.264 -11.921 -5.554 14.166 hybrid contribution -1.207 1.275 1.033 2.037 sum -6.472 -10.646 -4.521 13.253 Atomic orbital electron populations 1.23217 0.77704 1.04625 1.01734 1.86299 1.21769 1.24881 1.86945 1.18772 0.89613 0.85987 0.94412 1.21149 1.00781 0.90922 1.08878 1.21458 0.93703 0.98087 0.91900 1.19988 0.93295 0.94200 1.05969 1.17708 0.86881 0.83437 0.78486 1.90724 1.13474 1.87194 1.51991 1.45539 1.11433 1.05722 1.68963 1.21151 0.97331 0.79237 0.98210 1.19233 0.95382 0.89914 0.92037 1.20501 0.97011 1.44419 0.91820 0.92077 1.24993 0.94606 0.94556 0.98772 1.69839 1.11747 1.37835 1.30662 0.86586 0.79424 0.78450 0.83584 1.20639 1.21036 1.19801 1.22944 0.97780 0.98045 1.04875 1.22969 0.96442 1.08411 0.97171 1.20770 1.01416 0.87875 0.94945 1.16647 0.87379 0.82722 1.14603 1.48883 1.05940 1.06780 1.48724 1.27503 0.84614 0.98308 0.97259 1.74461 1.21545 1.00403 1.21792 1.78054 0.92623 1.23277 1.10784 1.82889 1.18168 0.82592 1.20296 0.92098 0.92150 0.87694 0.83451 0.83647 0.76826 0.96077 0.86200 0.92553 0.90175 0.91396 0.91310 0.90597 0.82806 0.74436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.29 -3.25 8.65 -18.92 -0.16 -3.42 16 3 C 0.16 1.88 6.71 -38.87 -0.26 1.62 16 4 C -0.20 -1.97 9.01 -39.53 -0.36 -2.33 16 5 C -0.03 -0.37 9.50 -39.20 -0.37 -0.74 16 6 C -0.13 -1.85 5.87 -104.98 -0.62 -2.46 16 7 C 0.55 10.07 7.75 -12.43 -0.10 9.98 16 8 O -0.55 -11.84 16.33 5.30 0.09 -11.76 16 9 N -0.67 -12.65 4.96 -61.33 -0.30 -12.95 16 10 C 0.16 3.51 4.62 -4.04 -0.02 3.49 16 11 C 0.04 0.76 2.04 -155.66 -0.32 0.44 16 12 C -0.50 -11.75 8.43 -34.44 -0.29 -12.04 16 13 H 0.06 1.44 7.82 -52.49 -0.41 1.03 16 14 C 0.08 1.81 5.31 -17.82 -0.09 1.71 16 15 N -0.87 -21.62 10.11 55.43 0.56 -21.06 16 16 Si 0.89 19.02 29.54 -169.99 -5.02 14.00 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 C -0.20 -4.01 9.96 -26.69 -0.27 -4.27 16 21 C -0.21 -4.02 9.92 -26.69 -0.26 -4.28 16 22 C -0.03 -0.36 9.02 -39.04 -0.35 -0.71 16 23 C 0.08 1.00 6.71 -83.46 -0.56 0.44 16 24 N -0.31 -4.12 3.86 -11.68 -0.05 -4.17 16 25 C 0.22 2.53 12.15 -90.17 -1.10 1.44 16 26 N -0.33 -4.68 12.15 29.64 0.36 -4.32 16 27 N -0.05 -0.81 13.39 60.35 0.81 0.00 16 28 N -0.05 -0.81 12.08 60.35 0.73 -0.08 16 29 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 30 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 31 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.15 1.02 6.27 -52.48 -0.33 0.69 16 33 H 0.15 1.49 6.46 -52.48 -0.34 1.15 16 34 H 0.40 6.87 6.19 -40.82 -0.25 6.62 16 35 H 0.02 0.44 8.09 -51.93 -0.42 0.02 16 36 H 0.12 3.00 5.89 -51.93 -0.31 2.70 16 37 H 0.26 6.54 8.32 -40.82 -0.34 6.20 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.15 1.78 6.47 -52.48 -0.34 1.44 16 43 H 0.24 1.66 7.19 -52.49 -0.38 1.29 16 LS Contribution 367.93 15.07 5.54 5.54 Total: -1.00 -30.35 367.93 -6.23 -36.58 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -4.82 Total: 8.23 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -3.97 Total: -6.59 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 2.11 Total: -42.59 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.08 Total: -15.18 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.35 -6.23 -36.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431167807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.190 kcal (2) G-P(sol) polarization free energy of solvation -30.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds