Wall clock time and date at job start Wed Apr 1 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46505 * 119.99591 * 2 1 4 4 C 1.39562 * 120.00053 * 180.02562 * 2 1 3 5 5 N 1.31140 * 125.52734 * 179.69604 * 4 2 1 6 6 N 1.40421 * 106.93570 * 179.85503 * 5 4 2 7 7 H 0.96995 * 126.77784 * 180.11698 * 6 5 4 8 8 C 1.34899 * 106.45073 * 0.39578 * 6 5 4 9 9 N 1.38615 * 125.99627 * 179.73516 * 8 6 5 10 10 C 1.34776 * 120.00191 * 0.02562 * 9 8 6 11 11 O 1.21718 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.46180 * 119.99857 * 180.02562 * 10 9 8 13 13 C 1.35062 * 119.99847 * 180.02562 * 12 10 9 14 14 C 1.46940 * 120.00050 * 180.02562 * 13 12 10 15 15 C 1.40033 * 120.10226 * 359.71836 * 14 13 12 16 16 C 1.37598 * 119.89674 * 179.73966 * 15 14 13 17 17 C 1.39175 * 120.10088 * 0.54428 * 16 15 14 18 18 O 1.35578 * 119.89518 * 179.74045 * 17 16 15 19 19 C 1.34785 * 116.99484 * 174.41740 * 18 17 16 20 20 H 1.07997 * 120.00256 * 5.05845 * 19 18 17 21 21 C 1.38716 * 119.99454 * 185.05372 * 19 18 17 22 22 N 1.31512 * 120.00039 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47186 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47077 * 120.00140 * 23 21 19 26 26 H 1.48494 * 109.47393 * 240.00023 * 23 21 19 27 27 C 1.39180 * 120.20687 * 359.71019 * 17 16 15 28 28 C 1.37589 * 120.10167 * 0.02873 * 27 17 16 29 29 N 1.31570 * 108.00055 * 359.76185 * 8 6 5 30 30 H 1.08998 * 109.46950 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46671 * 239.99712 * 1 2 3 32 32 H 1.08997 * 109.47258 * 119.99719 * 1 2 3 33 33 H 1.09010 * 109.46660 * 90.00338 * 3 2 1 34 34 H 1.08997 * 109.46789 * 210.00155 * 3 2 1 35 35 H 1.08996 * 109.47085 * 330.00499 * 3 2 1 36 36 H 0.97002 * 119.99945 * 179.97438 * 9 8 6 37 37 H 1.08001 * 120.00009 * 0.02562 * 12 10 9 38 38 H 1.08006 * 120.00159 * 359.97438 * 13 12 10 39 39 H 1.08003 * 120.04846 * 0.02562 * 15 14 13 40 40 H 1.08003 * 119.94729 * 180.22871 * 16 15 14 41 41 H 0.97000 * 120.00059 * 180.02562 * 22 21 19 42 42 H 1.07993 * 119.94767 * 180.02562 * 27 17 16 43 43 H 1.07997 * 120.05487 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1629 -1.2086 -0.0005 5 7 3.4682 -1.3349 -0.0063 6 7 3.7460 -2.7114 -0.0011 7 1 4.6224 -3.1270 -0.0018 8 6 2.5534 -3.3418 -0.0013 9 7 2.3572 -4.7140 -0.0022 10 6 3.4173 -5.5463 -0.0026 11 8 4.5469 -5.0931 -0.0016 12 6 3.2103 -6.9934 -0.0041 13 6 4.2726 -7.8275 -0.0039 14 6 4.0646 -9.2821 -0.0061 15 6 2.7660 -9.8059 -0.0024 16 6 2.5761 -11.1687 -0.0099 17 6 3.6723 -12.0262 -0.0096 18 8 3.4804 -13.3683 -0.0117 19 6 4.5772 -14.1430 -0.1281 20 1 5.5586 -13.6924 -0.1322 21 6 4.4452 -15.5191 -0.2427 22 7 3.2500 -16.0677 -0.2382 23 14 5.9651 -16.5928 -0.4049 24 1 7.1794 -15.7383 -0.3839 25 1 6.0162 -17.5526 0.7271 26 1 5.9081 -17.3413 -1.6862 27 6 4.9649 -11.5102 -0.0079 28 6 5.1646 -10.1489 -0.0059 29 7 1.6092 -2.4256 -0.0010 30 1 -0.3633 1.0277 0.0005 31 1 -0.3632 -0.5139 0.8900 32 1 -0.3633 -0.5138 -0.8900 33 1 2.3792 1.5834 1.0278 34 1 3.1499 1.1385 -0.5139 35 1 1.6084 2.0284 -0.5137 36 1 1.4570 -5.0752 -0.0019 37 1 2.2080 -7.3956 -0.0055 38 1 5.2750 -7.4253 -0.0030 39 1 1.9147 -9.1412 0.0016 40 1 1.5748 -11.5735 -0.0107 41 1 3.1577 -17.0300 -0.3180 42 1 5.8125 -12.1794 -0.0082 43 1 6.1679 -9.7494 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492879476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:39 Heat of formation + Delta-G solvation = 92.879174 kcal Electronic energy + Delta-G solvation = -27004.477062 eV Core-core repulsion = 22860.740439 eV Total energy + Delta-G solvation = -4143.736623 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27226 -40.06919 -39.28886 -37.12443 -36.84892 -35.17938 -33.48323 -32.46808 -32.20685 -30.56619 -30.33549 -28.55452 -28.12145 -25.87171 -25.34696 -24.43050 -22.47162 -22.03487 -21.26916 -20.53088 -19.48669 -18.34196 -18.29073 -17.40299 -17.26987 -16.77007 -16.39503 -16.11398 -15.29671 -15.28330 -14.94792 -14.68408 -14.51720 -14.36833 -14.31964 -13.95864 -13.63285 -13.19174 -12.85943 -12.74927 -12.72921 -12.24621 -12.13323 -12.10812 -11.94745 -11.86952 -11.56120 -11.26326 -11.23041 -10.82484 -10.61698 -10.59897 -10.52875 -10.07437 -9.82958 -9.62027 -9.25943 -8.99225 -8.50856 -8.01745 -7.27538 -6.76875 -4.30579 0.65610 1.59691 2.01473 2.02991 2.27817 2.31611 2.88624 2.97667 2.99053 3.04128 3.29090 3.36388 3.72993 4.37636 4.45878 4.57573 4.72744 4.80699 4.90624 5.05517 5.07610 5.11499 5.23457 5.35922 5.39402 5.39931 5.48674 5.51599 5.54666 5.74216 5.87925 5.93867 6.07027 6.22612 6.31768 6.43827 6.49023 6.64870 6.79030 6.94003 6.99674 7.10127 7.15530 7.17465 7.24876 7.50837 7.64201 7.68397 8.14391 8.67553 9.32908 10.39179 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.001435 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.927288 B =19507.127095 C =20097.356817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.599 5.599 3 C 0.111 3.889 4 C 0.491 3.509 5 N -0.368 5.368 6 N -0.471 5.471 7 H 0.451 0.549 8 C 0.530 3.470 9 N -0.628 5.628 10 C 0.570 3.430 11 O -0.546 6.546 12 C -0.296 4.296 13 C 0.066 3.934 14 C -0.211 4.211 15 C -0.037 4.037 16 C -0.200 4.200 17 C 0.169 3.831 18 O -0.157 6.157 19 C -0.393 4.393 20 H 0.100 0.900 21 C 0.042 3.958 22 N -0.847 5.847 23 Si 0.946 3.054 24 H -0.264 1.264 25 H -0.273 1.273 26 H -0.273 1.273 27 C -0.244 4.244 28 C -0.028 4.028 29 N -0.590 5.590 30 H 0.073 0.927 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.434 0.566 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.132 0.868 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 23.539 0.179 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.326 5.326 3 C -0.033 4.033 4 C 0.122 3.878 5 N -0.210 5.210 6 N -0.201 5.201 7 H 0.305 0.695 8 C 0.162 3.838 9 N -0.281 5.281 10 C 0.366 3.634 11 O -0.424 6.424 12 C -0.318 4.318 13 C 0.046 3.954 14 C -0.212 4.212 15 C -0.055 4.055 16 C -0.219 4.219 17 C 0.112 3.888 18 O -0.057 6.057 19 C -0.468 4.468 20 H 0.117 0.883 21 C -0.165 4.165 22 N -0.478 5.478 23 Si 0.770 3.230 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.263 4.263 28 C -0.047 4.047 29 N -0.333 5.333 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.274 0.726 37 H 0.152 0.848 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.086 0.914 42 H 0.150 0.850 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.720 23.967 0.176 24.121 hybrid contribution 0.669 -1.218 -0.050 1.390 sum -2.051 22.749 0.127 22.842 Atomic orbital electron populations 1.21493 0.77518 1.01774 1.01958 1.45157 1.04899 0.99927 1.82583 1.21580 0.97130 0.83227 1.01317 1.19933 0.86957 0.86284 0.94657 1.78168 1.12908 0.91519 1.38424 1.48109 1.08924 1.03218 1.59870 0.69488 1.19976 0.83723 0.85752 0.94301 1.42636 1.12698 0.99869 1.72896 1.18747 0.82739 0.87999 0.73930 1.90609 1.23209 1.77738 1.50837 1.22044 1.01069 0.88882 1.19777 1.22373 0.98379 0.91961 0.82644 1.18390 0.93755 0.91126 1.17929 1.20902 0.95613 0.93984 0.95050 1.20166 0.97613 0.92102 1.12017 1.19643 0.93152 0.84876 0.91171 1.83902 1.35573 1.11529 1.74700 1.21581 0.85366 0.88022 1.51808 0.88292 1.25436 0.98936 0.96277 0.95811 1.70018 1.22283 1.12478 1.43068 0.85558 0.79398 0.79444 0.78596 1.18775 1.19813 1.19797 1.21101 0.97317 0.95387 1.12472 1.20998 0.97245 0.92708 0.93704 1.70212 1.30174 0.97230 1.35666 0.90822 0.92625 0.92620 0.93411 0.91007 0.91224 0.72587 0.84807 0.85618 0.86200 0.85966 0.91446 0.85010 0.86689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.84 10.50 59.85 0.63 1.47 16 2 N -0.60 -6.04 3.41 -191.52 -0.65 -6.69 16 3 C 0.11 0.80 10.55 59.85 0.63 1.43 16 4 C 0.49 6.54 8.36 -321.25 -2.68 3.85 16 5 N -0.37 -5.20 12.10 29.98 0.36 -4.84 16 6 N -0.47 -6.42 7.04 30.07 0.21 -6.21 16 7 H 0.45 5.99 6.46 -182.36 -1.18 4.81 16 8 C 0.53 6.84 8.83 -320.51 -2.83 4.01 16 9 N -0.63 -6.48 5.38 -14.10 -0.08 -6.56 16 10 C 0.57 6.73 7.69 -13.07 -0.10 6.63 16 11 O -0.55 -7.69 13.74 5.17 0.07 -7.62 16 12 C -0.30 -3.30 9.40 -37.52 -0.35 -3.65 16 13 C 0.07 0.85 9.45 -37.19 -0.35 0.49 16 14 C -0.21 -3.19 5.87 -105.03 -0.62 -3.80 16 15 C -0.04 -0.57 9.40 -39.14 -0.37 -0.94 16 16 C -0.20 -3.70 9.97 -39.47 -0.39 -4.09 16 17 C 0.17 3.65 6.66 -38.88 -0.26 3.39 16 18 O -0.16 -4.07 9.74 0.70 0.01 -4.06 16 19 C -0.39 -9.99 9.48 30.91 0.29 -9.69 16 20 H 0.10 2.30 5.18 -52.49 -0.27 2.03 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.85 -22.86 13.67 55.48 0.76 -22.10 16 23 Si 0.95 18.75 29.55 -169.99 -5.02 13.73 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 C -0.24 -4.69 9.14 -39.47 -0.36 -5.06 16 28 C -0.03 -0.45 9.78 -39.14 -0.38 -0.84 16 29 N -0.59 -7.86 10.87 -14.31 -0.16 -8.02 16 30 H 0.07 0.32 7.79 -51.93 -0.40 -0.08 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.07 0.59 7.65 -51.93 -0.40 0.19 16 35 H 0.07 0.32 7.92 -51.93 -0.41 -0.09 16 36 H 0.43 3.21 8.80 -40.82 -0.36 2.86 16 37 H 0.13 1.21 6.07 -52.49 -0.32 0.90 16 38 H 0.13 1.55 7.52 -52.48 -0.39 1.15 16 39 H 0.12 1.43 6.16 -52.48 -0.32 1.10 16 40 H 0.12 2.16 8.06 -52.48 -0.42 1.74 16 41 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 42 H 0.13 2.53 5.62 -52.49 -0.29 2.24 16 43 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 375.45 15.07 5.66 5.66 Total: -1.00 -30.99 375.45 -11.68 -42.67 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -5.60 Total: 9.85 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -7.24 Total: -5.82 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.45 Total: -54.42 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.02 Total: 13.73 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.99 -11.68 -42.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492879476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.554 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds