Wall clock time and date at job start Wed Apr 1 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46505 * 119.99591 * 2 1 4 4 C 1.39562 * 120.00053 * 180.02562 * 2 1 3 5 5 N 1.31140 * 125.52734 * 179.69604 * 4 2 1 6 6 N 1.40421 * 106.93570 * 179.85503 * 5 4 2 7 7 H 0.96995 * 126.77784 * 180.11698 * 6 5 4 8 8 C 1.34899 * 106.45073 * 0.39578 * 6 5 4 9 9 N 1.38615 * 125.99627 * 179.73516 * 8 6 5 10 10 C 1.34776 * 120.00191 * 0.02562 * 9 8 6 11 11 O 1.21718 * 120.00087 * 0.02562 * 10 9 8 12 12 C 1.46180 * 119.99857 * 180.02562 * 10 9 8 13 13 C 1.35062 * 119.99847 * 180.02562 * 12 10 9 14 14 C 1.46940 * 120.00050 * 180.02562 * 13 12 10 15 15 C 1.40033 * 120.10226 * 359.71836 * 14 13 12 16 16 C 1.37598 * 119.89674 * 179.73966 * 15 14 13 17 17 C 1.39175 * 120.10088 * 0.54428 * 16 15 14 18 18 O 1.35578 * 119.89518 * 179.74045 * 17 16 15 19 19 C 1.34785 * 116.99484 * 174.41740 * 18 17 16 20 20 H 1.07997 * 120.00256 * 5.05845 * 19 18 17 21 21 C 1.38716 * 119.99454 * 185.05372 * 19 18 17 22 22 N 1.31512 * 120.00039 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47186 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47077 * 120.00140 * 23 21 19 26 26 H 1.48494 * 109.47393 * 240.00023 * 23 21 19 27 27 C 1.39180 * 120.20687 * 359.71019 * 17 16 15 28 28 C 1.37589 * 120.10167 * 0.02873 * 27 17 16 29 29 N 1.31570 * 108.00055 * 359.76185 * 8 6 5 30 30 H 1.08998 * 109.46950 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.46671 * 239.99712 * 1 2 3 32 32 H 1.08997 * 109.47258 * 119.99719 * 1 2 3 33 33 H 1.09010 * 109.46660 * 90.00338 * 3 2 1 34 34 H 1.08997 * 109.46789 * 210.00155 * 3 2 1 35 35 H 1.08996 * 109.47085 * 330.00499 * 3 2 1 36 36 H 0.97002 * 119.99945 * 179.97438 * 9 8 6 37 37 H 1.08001 * 120.00009 * 0.02562 * 12 10 9 38 38 H 1.08006 * 120.00159 * 359.97438 * 13 12 10 39 39 H 1.08003 * 120.04846 * 0.02562 * 15 14 13 40 40 H 1.08003 * 119.94729 * 180.22871 * 16 15 14 41 41 H 0.97000 * 120.00059 * 180.02562 * 22 21 19 42 42 H 1.07993 * 119.94767 * 180.02562 * 27 17 16 43 43 H 1.07997 * 120.05487 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1629 -1.2086 -0.0005 5 7 3.4682 -1.3349 -0.0063 6 7 3.7460 -2.7114 -0.0011 7 1 4.6224 -3.1270 -0.0018 8 6 2.5534 -3.3418 -0.0013 9 7 2.3572 -4.7140 -0.0022 10 6 3.4173 -5.5463 -0.0026 11 8 4.5469 -5.0931 -0.0016 12 6 3.2103 -6.9934 -0.0041 13 6 4.2726 -7.8275 -0.0039 14 6 4.0646 -9.2821 -0.0061 15 6 2.7660 -9.8059 -0.0024 16 6 2.5761 -11.1687 -0.0099 17 6 3.6723 -12.0262 -0.0096 18 8 3.4804 -13.3683 -0.0117 19 6 4.5772 -14.1430 -0.1281 20 1 5.5586 -13.6924 -0.1322 21 6 4.4452 -15.5191 -0.2427 22 7 3.2500 -16.0677 -0.2382 23 14 5.9651 -16.5928 -0.4049 24 1 7.1794 -15.7383 -0.3839 25 1 6.0162 -17.5526 0.7271 26 1 5.9081 -17.3413 -1.6862 27 6 4.9649 -11.5102 -0.0079 28 6 5.1646 -10.1489 -0.0059 29 7 1.6092 -2.4256 -0.0010 30 1 -0.3633 1.0277 0.0005 31 1 -0.3632 -0.5139 0.8900 32 1 -0.3633 -0.5138 -0.8900 33 1 2.3792 1.5834 1.0278 34 1 3.1499 1.1385 -0.5139 35 1 1.6084 2.0284 -0.5137 36 1 1.4570 -5.0752 -0.0019 37 1 2.2080 -7.3956 -0.0055 38 1 5.2750 -7.4253 -0.0030 39 1 1.9147 -9.1412 0.0016 40 1 1.5748 -11.5735 -0.0107 41 1 3.1577 -17.0300 -0.3180 42 1 5.8125 -12.1794 -0.0082 43 1 6.1679 -9.7494 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492879476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:38 Heat of formation + Delta-G solvation = 76.592297 kcal Electronic energy + Delta-G solvation = -27005.183314 eV Core-core repulsion = 22860.740439 eV Total energy + Delta-G solvation = -4144.442875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.24685 -41.12664 -40.76532 -38.54987 -37.65509 -36.14133 -34.82821 -34.06996 -33.18864 -31.96490 -31.33373 -29.74341 -28.83119 -27.54763 -26.09571 -25.59883 -23.83656 -23.25022 -22.28829 -21.58573 -20.65660 -19.77568 -19.31317 -18.83462 -18.44556 -17.77159 -17.34495 -16.97514 -16.51134 -16.46456 -16.16859 -16.00398 -15.71551 -15.61206 -15.28164 -15.14321 -14.96553 -14.64114 -14.11886 -13.62500 -13.41135 -13.34767 -13.34088 -13.21536 -13.06439 -12.74706 -12.73570 -12.61340 -12.50666 -12.24293 -12.10729 -11.60021 -11.54264 -11.21266 -11.16503 -11.07670 -10.62600 -10.18881 -9.88213 -8.84953 -8.70770 -8.53112 -6.19000 -0.45544 0.53344 0.60461 1.06436 1.10950 1.36326 1.44156 1.46329 1.53790 1.88040 2.14606 2.25246 2.45990 2.85213 3.17438 3.42322 3.52877 3.59660 3.94097 4.06837 4.09119 4.19349 4.32274 4.47671 4.48326 4.54822 4.58902 4.64331 4.74831 4.84088 4.94889 4.95876 4.97777 5.02413 5.11636 5.19975 5.25148 5.32609 5.54882 5.64413 5.72197 5.78440 5.97117 6.10828 6.13519 6.29200 6.33262 6.67914 6.91644 7.19378 7.68361 8.68948 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.045156 B = 0.001435 C = 0.001393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.927288 B =19507.127095 C =20097.356817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.601 5.601 3 C 0.107 3.893 4 C 0.479 3.521 5 N -0.391 5.391 6 N -0.478 5.478 7 H 0.450 0.550 8 C 0.524 3.476 9 N -0.610 5.610 10 C 0.571 3.429 11 O -0.563 6.563 12 C -0.251 4.251 13 C 0.046 3.954 14 C -0.178 4.178 15 C -0.032 4.032 16 C -0.209 4.209 17 C 0.132 3.868 18 O -0.219 6.219 19 C -0.416 4.416 20 H 0.107 0.893 21 C -0.017 4.017 22 N -0.912 5.912 23 Si 1.017 2.983 24 H -0.250 1.250 25 H -0.269 1.269 26 H -0.269 1.269 27 C -0.252 4.252 28 C -0.034 4.034 29 N -0.596 5.596 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.101 0.899 36 H 0.450 0.550 37 H 0.166 0.834 38 H 0.135 0.865 39 H 0.166 0.834 40 H 0.122 0.878 41 H 0.275 0.725 42 H 0.123 0.877 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.458 27.954 0.138 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.328 5.328 3 C -0.035 4.035 4 C 0.109 3.891 5 N -0.234 5.234 6 N -0.208 5.208 7 H 0.304 0.696 8 C 0.156 3.844 9 N -0.264 5.264 10 C 0.366 3.634 11 O -0.442 6.442 12 C -0.272 4.272 13 C 0.026 3.974 14 C -0.179 4.179 15 C -0.049 4.049 16 C -0.229 4.229 17 C 0.080 3.920 18 O -0.124 6.124 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.216 4.216 22 N -0.549 5.549 23 Si 0.837 3.163 24 H -0.173 1.173 25 H -0.194 1.194 26 H -0.194 1.194 27 C -0.272 4.272 28 C -0.052 4.052 29 N -0.340 5.340 30 H 0.125 0.875 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.293 0.707 37 H 0.183 0.817 38 H 0.153 0.847 39 H 0.183 0.817 40 H 0.140 0.860 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.947 28.488 0.139 28.641 hybrid contribution 0.618 -1.711 -0.018 1.820 sum -2.329 26.777 0.121 26.878 Atomic orbital electron populations 1.21658 0.75979 1.03888 1.01396 1.45631 1.05993 0.99584 1.81546 1.21752 0.97019 0.82795 1.01960 1.20430 0.87057 0.87368 0.94230 1.78131 1.13641 0.91875 1.39742 1.48091 1.09119 1.03320 1.60302 0.69585 1.20212 0.83543 0.86508 0.94088 1.42501 1.13290 0.98785 1.71845 1.18865 0.82612 0.88338 0.73602 1.90634 1.24285 1.78105 1.51153 1.22353 1.02124 0.88191 1.14504 1.22279 0.99597 0.90376 0.85109 1.18730 0.93308 0.92444 1.13437 1.21361 0.97328 0.92984 0.93248 1.20450 0.97010 0.93385 1.12021 1.20262 0.95164 0.84356 0.92259 1.83889 1.35968 1.13254 1.79307 1.21945 0.85893 0.88715 1.52608 0.87588 1.26584 1.02068 0.97436 0.95516 1.70149 1.24713 1.12561 1.47481 0.84540 0.75827 0.77438 0.78534 1.17336 1.19391 1.19395 1.21206 0.96281 0.96904 1.12761 1.21348 0.99464 0.91365 0.92983 1.70231 1.30283 0.97432 1.36029 0.87455 0.93197 0.93098 0.92850 0.92398 0.88039 0.70719 0.81711 0.84737 0.81678 0.85966 0.91591 0.85899 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.33 10.50 127.77 1.34 2.68 16 2 N -0.60 -10.74 3.41 -759.85 -2.59 -13.33 16 3 C 0.11 1.29 10.55 127.77 1.35 2.64 16 4 C 0.48 11.88 8.36 260.94 2.18 14.06 16 5 N -0.39 -10.53 12.10 -59.07 -0.71 -11.24 16 6 N -0.48 -12.16 7.04 -58.76 -0.41 -12.58 16 7 H 0.45 11.20 6.46 -213.12 -1.38 9.83 16 8 C 0.52 12.11 8.83 260.68 2.30 14.42 16 9 N -0.61 -10.10 5.38 -316.73 -1.71 -11.80 16 10 C 0.57 10.87 7.69 86.31 0.66 11.53 16 11 O -0.56 -13.83 13.74 -4.41 -0.06 -13.89 16 12 C -0.25 -4.11 9.40 23.60 0.22 -3.89 16 13 C 0.05 0.94 9.45 23.82 0.23 1.17 16 14 C -0.18 -4.69 5.87 -20.13 -0.12 -4.81 16 15 C -0.03 -0.85 9.40 22.55 0.21 -0.64 16 16 C -0.21 -7.71 9.97 22.34 0.22 -7.49 16 17 C 0.13 5.95 6.66 22.72 0.15 6.11 16 18 O -0.22 -12.30 9.74 -20.40 -0.20 -12.49 16 19 C -0.42 -22.73 9.48 67.93 0.64 -22.09 16 20 H 0.11 5.28 5.18 -2.91 -0.02 5.26 16 21 C -0.02 -0.92 5.49 84.86 0.47 -0.45 16 22 N -0.91 -53.22 13.67 21.62 0.30 -52.93 16 23 Si 1.02 40.50 29.55 68.60 2.03 42.52 16 24 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 25 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 26 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 27 C -0.25 -9.87 9.14 22.34 0.20 -9.67 16 28 C -0.03 -1.01 9.78 22.55 0.22 -0.79 16 29 N -0.60 -14.53 10.87 -199.20 -2.17 -16.70 16 30 H 0.11 0.53 7.79 -2.39 -0.02 0.51 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.06 0.87 7.65 -2.39 -0.02 0.85 16 35 H 0.10 0.57 7.92 -2.39 -0.02 0.55 16 36 H 0.45 4.50 8.80 -92.71 -0.82 3.68 16 37 H 0.17 1.74 6.07 -2.91 -0.02 1.72 16 38 H 0.13 2.66 7.52 -2.91 -0.02 2.64 16 39 H 0.17 2.91 6.16 -2.91 -0.02 2.89 16 40 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 41 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 42 H 0.12 4.93 5.62 -2.91 -0.02 4.91 16 43 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.68 375.45 3.67 -71.01 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -1.09 Total: 28.66 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 10.29 Total: 2.77 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -7.29 Total: -118.58 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.26 Total: -26.39 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Total: -74.68 3.67 -71.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492879476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.600 kcal (2) G-P(sol) polarization free energy of solvation -74.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds