Wall clock time and date at job start Wed Apr 1 2020 02:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34693 * 116.99801 * 2 1 4 4 O 1.21529 * 120.00209 * 359.97438 * 3 2 1 5 5 N 1.34780 * 119.99371 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99421 * 179.97438 * 5 3 2 7 7 N 1.40097 * 120.00205 * 359.97438 * 5 3 2 8 8 C 1.29753 * 119.99928 * 179.97438 * 7 5 3 9 9 C 1.47430 * 120.00032 * 180.02562 * 8 7 5 10 10 C 1.36741 * 126.68546 * 185.35176 * 9 8 7 11 11 N 1.34653 * 108.05428 * 180.25734 * 10 9 8 12 12 C 1.46498 * 125.25098 * 179.69497 * 11 10 9 13 13 C 1.50704 * 109.47040 * 125.00540 * 12 11 10 14 14 H 1.08002 * 119.99866 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00339 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99813 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00151 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47115 * 89.99699 * 17 15 13 19 19 H 1.48502 * 109.47388 * 209.99741 * 17 15 13 20 20 H 1.48495 * 109.47344 * 330.00217 * 17 15 13 21 21 N 1.39825 * 109.49365 * 359.72052 * 11 10 9 22 22 C 1.31559 * 108.81206 * 359.97438 * 21 11 10 23 23 C 1.48217 * 126.49353 * 179.97438 * 22 21 11 24 24 C 1.39836 * 120.91397 * 224.94621 * 23 22 21 25 25 C 1.37946 * 119.01462 * 179.97438 * 24 23 22 26 26 N 1.31942 * 120.88666 * 0.02562 * 25 24 23 27 27 C 1.31946 * 122.02196 * 359.97438 * 26 25 24 28 28 C 1.37942 * 120.88316 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46762 * 60.00552 * 1 2 3 30 30 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47511 * 300.00160 * 1 2 3 32 32 H 1.08997 * 109.46795 * 269.99655 * 6 5 3 33 33 H 1.08994 * 109.47222 * 30.00089 * 6 5 3 34 34 H 1.09008 * 109.46623 * 150.00045 * 6 5 3 35 35 H 1.08006 * 119.99673 * 0.02562 * 8 7 5 36 36 H 1.07998 * 125.97399 * 359.97438 * 10 9 8 37 37 H 1.09001 * 109.47136 * 244.99683 * 12 11 10 38 38 H 1.08992 * 109.47542 * 5.00397 * 12 11 10 39 39 H 0.97002 * 120.00070 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.49336 * 359.95757 * 24 23 22 41 41 H 1.08000 * 119.55808 * 179.97438 * 25 24 23 42 42 H 1.07999 * 119.56084 * 180.02562 * 27 26 25 43 43 H 1.08007 * 120.49404 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.2001 0.0000 4 8 1.4016 2.2194 -0.0005 5 7 3.4094 1.2706 0.0005 6 6 4.0745 2.5760 0.0000 7 7 4.1724 0.0956 0.0016 8 6 5.4682 0.1635 0.0016 9 6 6.2711 -1.0730 0.0022 10 6 7.6317 -1.1635 0.1045 11 7 7.9678 -2.4666 0.0593 12 6 9.3340 -2.9904 0.1318 13 6 9.4290 -3.9922 1.2536 14 1 8.5588 -4.2160 1.8529 15 6 10.6271 -4.6223 1.5156 16 7 11.6868 -4.3495 0.7863 17 14 10.7449 -5.8635 2.9066 18 1 10.4301 -7.2191 2.3883 19 1 12.1216 -5.8539 3.4634 20 1 9.7768 -5.5045 3.9738 21 7 6.8116 -3.2426 -0.0682 22 6 5.7665 -2.4442 -0.1021 23 6 4.3479 -2.8542 -0.2297 24 6 3.4850 -2.1921 -1.1087 25 6 2.1723 -2.6066 -1.1966 26 7 1.7289 -3.6115 -0.4655 27 6 2.5096 -4.2627 0.3756 28 6 3.8359 -3.9144 0.5249 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.2399 2.8990 -1.0278 33 1 3.4463 3.3040 0.5130 34 1 5.0323 2.4959 0.5143 35 1 5.9585 1.1258 0.0012 36 1 8.3172 -0.3345 0.1999 37 1 9.5877 -3.4754 -0.8108 38 1 10.0281 -2.1707 0.3170 39 1 12.5296 -4.7930 0.9703 40 1 3.8410 -1.3684 -1.7096 41 1 1.4981 -2.1013 -1.8723 42 1 2.1049 -5.0799 0.9543 43 1 4.4694 -4.4520 1.2150 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000495748744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:29 Heat of formation + Delta-G solvation = 89.640861 kcal Electronic energy + Delta-G solvation = -29482.539388 eV Core-core repulsion = 25338.662341 eV Total energy + Delta-G solvation = -4143.877047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.69218 -40.47064 -39.44192 -37.72207 -36.31028 -34.28168 -33.01532 -32.73171 -30.93801 -30.80865 -29.69628 -28.64639 -27.30187 -26.47735 -24.25147 -23.56568 -23.09032 -22.00101 -20.68463 -20.17322 -19.42634 -18.29072 -17.32704 -16.84627 -16.77070 -16.57254 -15.94274 -15.79227 -15.63614 -15.32927 -14.67986 -14.62323 -14.33203 -14.19393 -13.74279 -13.53968 -13.39297 -13.06116 -13.03274 -12.73688 -12.45724 -12.39558 -12.16982 -12.07117 -11.86142 -11.33797 -11.11818 -10.95722 -10.84960 -10.81550 -10.56697 -10.39041 -10.29561 -9.80060 -9.52966 -9.33495 -9.23985 -8.79049 -8.74151 -8.54080 -7.57773 -6.39003 -4.45194 1.19407 1.47757 1.57744 1.82227 2.56751 2.77836 3.09377 3.16173 3.22850 3.28129 3.39027 3.42327 4.17824 4.20861 4.45308 4.70970 4.72588 4.80809 4.90674 4.98112 5.06694 5.07643 5.13269 5.16018 5.27556 5.38156 5.41585 5.44145 5.47411 5.62061 5.77400 5.88348 5.97639 6.08287 6.12090 6.23505 6.53796 6.65960 6.79738 6.87678 6.96590 6.99344 7.45586 7.58798 7.66919 7.68705 8.21168 8.24316 8.29690 8.61887 9.21837 10.69828 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.014577 B = 0.003011 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.362282 B = 9297.231489 C =10633.910546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 O -0.337 6.337 3 C 0.678 3.322 4 O -0.573 6.573 5 N -0.456 5.456 6 C 0.064 3.936 7 N -0.258 5.258 8 C 0.176 3.824 9 C -0.232 4.232 10 C 0.101 3.899 11 N -0.315 5.315 12 C 0.252 3.748 13 C -0.534 4.534 14 H 0.070 0.930 15 C 0.065 3.935 16 N -0.893 5.893 17 Si 0.909 3.091 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 N -0.250 5.250 22 C 0.110 3.890 23 C 0.049 3.951 24 C -0.103 4.103 25 C 0.103 3.897 26 N -0.489 5.489 27 C 0.088 3.912 28 C -0.148 4.148 29 H 0.061 0.939 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.180 0.820 37 H 0.051 0.949 38 H 0.060 0.940 39 H 0.269 0.731 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.151 0.849 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.352 10.411 -2.849 17.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 O -0.249 6.249 3 C 0.433 3.567 4 O -0.461 6.461 5 N -0.281 5.281 6 C -0.079 4.079 7 N -0.064 5.064 8 C -0.033 4.033 9 C -0.248 4.248 10 C -0.053 4.053 11 N -0.092 5.092 12 C 0.135 3.865 13 C -0.573 4.573 14 H 0.089 0.911 15 C -0.138 4.138 16 N -0.531 5.531 17 Si 0.735 3.265 18 H -0.202 1.202 19 H -0.209 1.209 20 H -0.196 1.196 21 N -0.071 5.071 22 C -0.058 4.058 23 C 0.038 3.962 24 C -0.124 4.124 25 C -0.054 4.054 26 N -0.199 5.199 27 C -0.069 4.069 28 C -0.169 4.169 29 H 0.079 0.921 30 H 0.124 0.876 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.138 0.862 36 H 0.197 0.803 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.168 0.832 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -15.604 8.663 -2.977 18.094 hybrid contribution 1.610 1.338 0.935 2.293 sum -13.994 10.001 -2.041 17.321 Atomic orbital electron populations 1.23254 0.75066 1.03804 1.02207 1.86502 1.23158 1.29377 1.85861 1.17457 0.81187 0.82526 0.75491 1.91018 1.63020 1.35501 1.56558 1.47692 1.02833 1.03870 1.73705 1.22078 0.98844 0.83826 1.03154 1.75358 1.07424 1.05603 1.17972 1.23590 0.90196 0.96472 0.93036 1.18977 0.91114 0.90373 1.24313 1.22544 0.94911 0.89317 0.98522 1.49380 1.08363 1.02729 1.48723 1.19929 0.70369 0.96428 0.99753 1.21192 0.96915 1.23751 1.15407 0.91147 1.24926 0.95095 0.96846 0.96964 1.69902 1.01136 1.42660 1.39364 0.86309 0.77450 0.81183 0.81511 1.20178 1.20910 1.19611 1.77592 0.90527 1.18485 1.20474 1.21731 0.92126 0.90312 1.01630 1.17930 0.89039 0.94186 0.95013 1.21855 0.94127 0.98552 0.97898 1.22311 0.93279 0.92988 0.96817 1.67537 1.38702 1.07545 1.06072 1.22476 0.90164 0.98411 0.95808 1.22194 0.96992 0.97293 1.00439 0.92062 0.87635 0.92225 0.91469 0.89150 0.89993 0.86159 0.80295 0.93118 0.92205 0.92132 0.85450 0.83725 0.83182 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.50 10.56 101.05 1.07 1.57 16 2 O -0.34 -4.42 8.75 -40.47 -0.35 -4.78 16 3 C 0.68 9.53 8.53 54.06 0.46 9.99 16 4 O -0.57 -8.89 15.71 -19.29 -0.30 -9.19 16 5 N -0.46 -5.80 3.90 -72.10 -0.28 -6.08 16 6 C 0.06 0.58 9.88 59.85 0.59 1.17 16 7 N -0.26 -3.49 7.13 32.15 0.23 -3.26 16 8 C 0.18 2.16 10.33 -14.69 -0.15 2.01 16 9 C -0.23 -3.52 6.24 -103.38 -0.64 -4.17 16 10 C 0.10 1.56 11.34 -16.86 -0.19 1.37 16 11 N -0.31 -6.23 3.64 -62.25 -0.23 -6.46 16 12 C 0.25 5.67 6.22 -5.19 -0.03 5.64 16 13 C -0.53 -13.68 9.21 -34.44 -0.32 -14.00 16 14 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -23.75 13.29 55.43 0.74 -23.01 16 17 Si 0.91 20.27 29.54 -169.99 -5.02 15.25 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 N -0.25 -5.16 12.34 34.56 0.43 -4.73 16 22 C 0.11 1.96 6.92 -80.56 -0.56 1.40 16 23 C 0.05 0.79 5.49 -104.60 -0.57 0.21 16 24 C -0.10 -1.48 7.57 -39.09 -0.30 -1.78 16 25 C 0.10 1.37 9.86 -17.61 -0.17 1.19 16 26 N -0.49 -6.89 10.35 -13.35 -0.14 -7.03 16 27 C 0.09 1.20 11.17 -17.61 -0.20 1.01 16 28 C -0.15 -2.27 9.89 -39.09 -0.39 -2.65 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.84 7.42 -51.93 -0.39 0.45 16 34 H 0.08 0.57 6.19 -51.92 -0.32 0.25 16 35 H 0.12 1.04 5.91 -52.48 -0.31 0.73 16 36 H 0.18 1.96 8.06 -52.49 -0.42 1.54 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.30 8.05 -51.93 -0.42 0.88 16 39 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.13 1.80 6.99 -52.49 -0.37 1.43 16 41 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.15 1.63 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.04 8.06 -52.48 -0.42 1.61 16 LS Contribution 378.27 15.07 5.70 5.70 Total: -1.00 -31.59 378.27 -5.88 -37.47 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -5.15 Total: 1.57 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -1.50 Total: 4.55 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.75 Total: -50.58 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.66 Total: -13.97 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.59 -5.88 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000495748744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.112 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds