Wall clock time and date at job start Wed Apr 1 2020 02:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00137 * 2 1 4 4 C 1.38565 * 120.07276 * 0.26679 * 3 2 1 5 5 C 1.38231 * 119.99992 * 180.25598 * 4 3 2 6 6 C 1.50706 * 119.92987 * 179.76980 * 5 4 3 7 7 N 1.46900 * 109.46840 * 269.72824 * 6 5 4 8 8 C 1.48720 * 111.01831 * 54.48842 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42893 * 110.32804 * 118.84639 * 10 9 8 12 12 C 1.50712 * 110.32186 * 241.05248 * 10 9 8 13 13 H 1.07993 * 120.00045 * 118.54517 * 12 10 9 14 14 C 1.37880 * 119.99643 * 298.54459 * 12 10 9 15 15 N 1.31518 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99631 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47306 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46941 * 120.00569 * 16 14 12 19 19 H 1.48509 * 109.46763 * 239.99933 * 16 14 12 20 20 C 1.48567 * 110.99718 * 169.99824 * 7 6 5 21 21 C 1.38255 * 120.14692 * 359.49841 * 5 4 3 22 22 C 1.38244 * 120.14430 * 0.22745 * 21 5 4 23 23 C 1.38558 * 119.99953 * 0.02562 * 22 21 5 24 24 O 1.36001 * 120.07304 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99736 * 0.02562 * 24 23 22 26 26 F 1.39908 * 109.47034 * 299.99739 * 25 24 23 27 27 F 1.39901 * 109.47354 * 59.99832 * 25 24 23 28 28 H 1.09003 * 109.46731 * 60.00383 * 1 2 3 29 29 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47317 * 300.00770 * 1 2 3 31 31 H 1.08003 * 119.99708 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.47369 * 149.72635 * 6 5 4 33 33 H 1.09000 * 109.46724 * 29.72532 * 6 5 4 34 34 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 35 35 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 36 36 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 37 37 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 38 38 H 0.96693 * 114.00324 * 61.44649 * 11 10 9 39 39 H 0.97001 * 119.99874 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 41 41 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 42 42 H 1.08008 * 119.92743 * 180.25450 * 21 5 4 43 43 H 1.07999 * 120.00014 * 180.02562 * 22 21 5 44 44 H 1.09001 * 109.47211 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0056 5 6 1.9224 3.6057 0.0002 6 6 1.1017 4.8696 0.0011 7 7 0.8346 5.2809 -1.3837 8 6 0.2038 4.1773 -2.1556 9 6 -0.4903 4.8817 -3.3411 10 6 -0.7322 6.3287 -2.8646 11 8 -0.0365 7.2511 -3.7054 12 6 -2.2075 6.6371 -2.8557 13 1 -2.6992 6.8967 -1.9299 14 6 -2.9291 6.5878 -4.0295 15 7 -2.3303 6.2711 -5.1568 16 14 -4.7574 6.9707 -4.0185 17 1 -5.1870 7.2950 -2.6346 18 1 -5.0254 8.1311 -4.9055 19 1 -5.5134 5.7894 -4.5070 20 6 -0.1655 6.3786 -1.4295 21 6 3.3030 3.6798 -0.0002 22 6 4.0603 2.5233 -0.0001 23 6 3.4360 1.2863 0.0000 24 8 4.1796 0.1476 0.0007 25 6 5.6003 0.3006 0.0018 26 9 5.9943 1.0062 -1.1403 27 9 5.9925 1.0064 1.1444 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2147 2.3196 0.0104 32 1 1.6504 5.6589 0.5151 33 1 0.1575 4.6894 0.5151 34 1 -0.5299 3.6552 -1.5413 35 1 0.9617 3.4824 -2.5172 36 1 -1.4384 4.3944 -3.5686 37 1 0.1578 4.8751 -4.2174 38 1 -0.3199 7.2317 -4.6297 39 1 -2.8379 6.2368 -5.9826 40 1 0.3155 7.3390 -1.2438 41 1 -0.9573 6.2021 -0.7016 42 1 3.7908 4.6434 -0.0003 43 1 5.1386 2.5839 0.0000 44 1 6.0716 -0.6822 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:05 Heat of formation + Delta-G solvation = -193.000279 kcal Electronic energy + Delta-G solvation = -30818.149706 eV Core-core repulsion = 26179.034482 eV Total energy + Delta-G solvation = -4639.115224 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.55820 -47.54783 -40.65283 -38.62919 -38.42060 -37.04885 -34.71959 -32.12396 -31.57938 -30.35258 -29.30011 -27.86910 -27.40063 -26.56353 -25.06591 -23.77560 -22.58982 -21.68551 -20.19501 -19.41496 -19.27239 -18.40388 -18.11933 -17.30794 -16.96184 -16.52896 -15.93751 -15.68928 -15.37197 -15.02457 -14.71729 -14.61653 -14.32261 -14.16915 -14.03804 -13.93897 -13.84045 -13.64692 -13.39470 -13.07685 -12.67541 -12.49469 -12.38777 -12.05535 -11.98911 -11.57206 -11.40222 -11.32120 -11.17318 -11.10952 -10.92716 -10.70939 -10.54025 -10.48094 -10.34761 -9.86308 -9.13625 -8.80471 -8.60380 -8.14173 -7.99397 -7.77106 -6.21580 -4.30616 1.16312 1.34820 2.38356 3.12767 3.19162 3.23962 3.28288 3.31759 3.57752 4.06427 4.28090 4.41384 4.62682 4.74609 4.82330 4.86799 5.00064 5.06943 5.09434 5.17001 5.33147 5.41427 5.45482 5.63183 5.76461 5.78378 5.98448 6.00502 6.06661 6.14858 6.21685 6.43314 6.44939 6.60823 6.63324 6.67722 6.94598 7.04343 7.31905 7.35056 7.49079 7.55525 7.64850 7.79850 8.20042 8.72703 9.38419 9.57007 10.84922 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.002693 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.534202 B =10395.748987 C =10994.331557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.115 3.885 4 C -0.168 4.168 5 C -0.050 4.050 6 C 0.080 3.920 7 N -0.503 5.503 8 C 0.036 3.964 9 C -0.120 4.120 10 C 0.254 3.746 11 O -0.585 6.585 12 C -0.537 4.537 13 H 0.060 0.940 14 C 0.069 3.931 15 N -0.893 5.893 16 Si 0.898 3.102 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.050 3.950 21 C -0.099 4.099 22 C -0.153 4.153 23 C 0.066 3.934 24 O -0.311 6.311 25 C 0.410 3.590 26 F -0.199 7.199 27 F -0.201 7.201 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.137 0.863 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.030 0.970 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.379 0.621 39 H 0.266 0.734 40 H 0.074 0.926 41 H 0.045 0.955 42 H 0.133 0.867 43 H 0.138 0.862 44 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.614 -13.582 11.304 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.070 3.930 4 C -0.187 4.187 5 C -0.051 4.051 6 C -0.048 4.048 7 N -0.227 5.227 8 C -0.092 4.092 9 C -0.159 4.159 10 C 0.213 3.787 11 O -0.394 6.394 12 C -0.576 4.576 13 H 0.078 0.922 14 C -0.133 4.133 15 N -0.532 5.532 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.077 4.077 21 C -0.118 4.118 22 C -0.171 4.171 23 C 0.022 3.978 24 O -0.229 6.229 25 C 0.319 3.681 26 F -0.181 7.181 27 F -0.183 7.183 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.228 0.772 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.151 0.849 43 H 0.155 0.845 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 12.426 -13.643 11.463 21.724 hybrid contribution -2.114 0.080 -0.281 2.134 sum 10.311 -13.563 11.182 20.379 Atomic orbital electron populations 1.23103 0.78188 1.03979 1.01719 1.86123 1.21340 1.25802 1.89056 1.18076 0.88551 0.85290 1.01124 1.21053 1.00109 0.90901 1.06666 1.19653 0.93894 0.94089 0.97459 1.21247 0.97604 0.93609 0.92334 1.65600 1.41108 1.07160 1.08794 1.23165 0.96078 0.93741 0.96215 1.22852 0.99067 0.98710 0.95253 1.19213 0.89198 0.85177 0.85076 1.86134 1.65489 1.63429 1.24326 1.21749 0.93592 1.47660 0.94566 0.92198 1.25008 0.98858 0.93985 0.95438 1.69726 1.36513 1.48165 0.98832 0.86449 0.84717 0.78060 0.78223 1.19742 1.20776 1.20936 1.23126 0.92096 0.94018 0.98505 1.20774 0.92865 0.97990 1.00126 1.21320 1.00675 0.90940 1.04208 1.17996 0.88021 0.85144 1.06605 1.86673 1.16441 1.30682 1.89141 1.23353 0.80669 0.92198 0.71830 1.93110 1.90691 1.82209 1.52073 1.93089 1.90774 1.82274 1.52176 0.92229 0.88160 0.92645 0.84535 0.89901 0.94045 0.95180 0.91880 0.91160 0.92722 0.77158 0.92382 0.90803 0.93642 0.84899 0.84458 0.80457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.14 10.28 -34.24 -0.35 -4.49 16 3 C 0.12 1.64 6.70 -39.12 -0.26 1.38 16 4 C -0.17 -2.34 7.38 -39.46 -0.29 -2.63 16 5 C -0.05 -0.73 4.65 -104.62 -0.49 -1.22 16 6 C 0.08 1.24 5.22 -4.97 -0.03 1.21 16 7 N -0.50 -9.66 5.48 -231.26 -1.27 -10.92 16 8 C 0.04 0.70 4.96 -2.09 -0.01 0.69 16 9 C -0.12 -2.80 5.54 -25.35 -0.14 -2.94 16 10 C 0.25 6.29 1.05 -90.39 -0.10 6.20 16 11 O -0.59 -15.54 12.94 -35.23 -0.46 -16.00 16 12 C -0.54 -14.23 8.08 -34.43 -0.28 -14.50 16 13 H 0.06 1.58 7.58 -52.49 -0.40 1.18 16 14 C 0.07 1.82 5.02 -17.82 -0.09 1.73 16 15 N -0.89 -23.75 10.82 55.43 0.60 -23.15 16 16 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 C 0.05 1.07 5.77 -2.18 -0.01 1.06 16 21 C -0.10 -1.36 9.69 -39.57 -0.38 -1.75 16 22 C -0.15 -2.05 8.26 -39.46 -0.33 -2.37 16 23 C 0.07 0.92 6.50 -39.12 -0.25 0.67 16 24 O -0.31 -3.82 10.22 -34.24 -0.35 -4.17 16 25 C 0.41 3.53 5.98 101.05 0.60 4.13 16 26 F -0.20 -2.09 15.58 2.25 0.04 -2.05 16 27 F -0.20 -1.97 15.59 2.25 0.04 -1.93 16 28 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.48 7.65 -51.93 -0.40 0.08 16 31 H 0.14 1.75 5.65 -52.48 -0.30 1.45 16 32 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 33 H 0.04 0.62 7.82 -51.93 -0.41 0.21 16 34 H 0.03 0.55 7.13 -51.93 -0.37 0.18 16 35 H 0.06 1.21 7.76 -51.93 -0.40 0.81 16 36 H 0.07 1.74 7.24 -51.93 -0.38 1.37 16 37 H 0.05 1.33 7.98 -51.93 -0.41 0.92 16 38 H 0.38 10.16 7.33 45.56 0.33 10.49 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.07 1.60 8.08 -51.93 -0.42 1.18 16 41 H 0.05 0.94 7.38 -51.93 -0.38 0.56 16 42 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.14 1.67 5.10 -52.49 -0.27 1.40 16 44 H 0.18 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -30.43 361.49 -7.41 -37.84 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.02 Total: 11.16 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: -1.06 Total: -7.12 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: -0.67 Total: -34.07 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -1.16 Total: -24.67 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.07 Total: -3.98 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.43 -7.41 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.162 kcal (2) G-P(sol) polarization free energy of solvation -30.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds