Wall clock time and date at job start Wed Apr 1 2020 02:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00137 * 2 1 4 4 C 1.38565 * 120.07276 * 0.26679 * 3 2 1 5 5 C 1.38231 * 119.99992 * 180.25598 * 4 3 2 6 6 C 1.50706 * 119.92987 * 179.76980 * 5 4 3 7 7 N 1.46900 * 109.46840 * 269.72824 * 6 5 4 8 8 C 1.48720 * 111.01831 * 54.48842 * 7 6 5 9 9 C 1.54381 * 104.51692 * 158.96284 * 8 7 6 10 10 C 1.54257 * 105.14978 * 336.27274 * 9 8 7 11 11 O 1.42893 * 110.32804 * 118.84639 * 10 9 8 12 12 C 1.50712 * 110.32186 * 241.05248 * 10 9 8 13 13 H 1.07993 * 120.00045 * 118.54517 * 12 10 9 14 14 C 1.37880 * 119.99643 * 298.54459 * 12 10 9 15 15 N 1.31518 * 120.00081 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99631 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47306 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.46941 * 120.00569 * 16 14 12 19 19 H 1.48509 * 109.46763 * 239.99933 * 16 14 12 20 20 C 1.48567 * 110.99718 * 169.99824 * 7 6 5 21 21 C 1.38255 * 120.14692 * 359.49841 * 5 4 3 22 22 C 1.38244 * 120.14430 * 0.22745 * 21 5 4 23 23 C 1.38558 * 119.99953 * 0.02562 * 22 21 5 24 24 O 1.36001 * 120.07304 * 180.02562 * 23 22 21 25 25 C 1.42898 * 116.99736 * 0.02562 * 24 23 22 26 26 F 1.39908 * 109.47034 * 299.99739 * 25 24 23 27 27 F 1.39901 * 109.47354 * 59.99832 * 25 24 23 28 28 H 1.09003 * 109.46731 * 60.00383 * 1 2 3 29 29 H 1.09005 * 109.47003 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47317 * 300.00770 * 1 2 3 31 31 H 1.08003 * 119.99708 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.47369 * 149.72635 * 6 5 4 33 33 H 1.09000 * 109.46724 * 29.72532 * 6 5 4 34 34 H 1.09004 * 110.38960 * 40.24251 * 8 7 6 35 35 H 1.08996 * 110.50963 * 277.74694 * 8 7 6 36 36 H 1.09002 * 110.32526 * 217.32092 * 9 8 7 37 37 H 1.08998 * 110.32190 * 95.21733 * 9 8 7 38 38 H 0.96693 * 114.00324 * 61.44649 * 11 10 9 39 39 H 0.97001 * 119.99874 * 180.02562 * 15 14 12 40 40 H 1.08999 * 110.41133 * 82.17552 * 20 7 6 41 41 H 1.09001 * 110.41003 * 319.73948 * 20 7 6 42 42 H 1.08008 * 119.92743 * 180.25450 * 21 5 4 43 43 H 1.07999 * 120.00014 * 180.02562 * 22 21 5 44 44 H 1.09001 * 109.47211 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2933 2.3748 0.0056 5 6 1.9224 3.6057 0.0002 6 6 1.1017 4.8696 0.0011 7 7 0.8346 5.2809 -1.3837 8 6 0.2038 4.1773 -2.1556 9 6 -0.4903 4.8817 -3.3411 10 6 -0.7322 6.3287 -2.8646 11 8 -0.0365 7.2511 -3.7054 12 6 -2.2075 6.6371 -2.8557 13 1 -2.6992 6.8967 -1.9299 14 6 -2.9291 6.5878 -4.0295 15 7 -2.3303 6.2711 -5.1568 16 14 -4.7574 6.9707 -4.0185 17 1 -5.1870 7.2950 -2.6346 18 1 -5.0254 8.1311 -4.9055 19 1 -5.5134 5.7894 -4.5070 20 6 -0.1655 6.3786 -1.4295 21 6 3.3030 3.6798 -0.0002 22 6 4.0603 2.5233 -0.0001 23 6 3.4360 1.2863 0.0000 24 8 4.1796 0.1476 0.0007 25 6 5.6003 0.3006 0.0018 26 9 5.9943 1.0062 -1.1403 27 9 5.9925 1.0064 1.1444 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2147 2.3196 0.0104 32 1 1.6504 5.6589 0.5151 33 1 0.1575 4.6894 0.5151 34 1 -0.5299 3.6552 -1.5413 35 1 0.9617 3.4824 -2.5172 36 1 -1.4384 4.3944 -3.5686 37 1 0.1578 4.8751 -4.2174 38 1 -0.3199 7.2317 -4.6297 39 1 -2.8379 6.2368 -5.9826 40 1 0.3155 7.3390 -1.2438 41 1 -0.9573 6.2021 -0.7016 42 1 3.7908 4.6434 -0.0003 43 1 5.1386 2.5839 0.0000 44 1 6.0716 -0.6822 0.0018 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146339.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:04 Heat of formation + Delta-G solvation = -214.565842 kcal Electronic energy + Delta-G solvation = -30819.084859 eV Core-core repulsion = 26179.034482 eV Total energy + Delta-G solvation = -4640.050377 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.28435 -48.28294 -41.66022 -40.14087 -39.36131 -38.27697 -36.41531 -34.16494 -32.93455 -31.38252 -30.69567 -29.64493 -28.36036 -27.53608 -26.51491 -25.26772 -23.58563 -22.87041 -21.65712 -21.26671 -20.16215 -19.25026 -18.97084 -18.86368 -18.23176 -17.43582 -17.14790 -16.95475 -16.74703 -16.59568 -16.04834 -15.89387 -15.42121 -15.26675 -15.15574 -14.99561 -14.85153 -14.63967 -14.60516 -14.54532 -14.21514 -13.79702 -13.59008 -13.28431 -13.06507 -12.98172 -12.90372 -12.72413 -12.65863 -12.46750 -12.34474 -12.25426 -12.16992 -11.93701 -11.88040 -11.74338 -11.04609 -10.60418 -10.13161 -9.81800 -9.35956 -8.99308 -8.20683 -6.37296 0.10800 0.30096 1.39129 1.42925 1.52975 1.62726 2.23519 2.37875 2.50705 2.56984 3.04359 3.28986 3.51545 3.60074 3.72061 3.72736 3.92792 4.00934 4.03519 4.11119 4.28781 4.29455 4.32151 4.36010 4.42921 4.47525 4.60660 4.71115 4.72564 4.76694 4.89301 4.97697 5.11144 5.15724 5.20671 5.45379 5.46592 5.53901 5.59307 5.69417 5.74157 5.85235 6.16037 6.26263 6.36448 6.70316 7.34702 7.48463 8.84596 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018569 B = 0.002693 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.534202 B =10395.748987 C =10994.331557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.103 3.897 4 C -0.168 4.168 5 C -0.064 4.064 6 C 0.083 3.917 7 N -0.509 5.509 8 C 0.051 3.949 9 C -0.112 4.112 10 C 0.235 3.765 11 O -0.596 6.596 12 C -0.559 4.559 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.912 5.912 16 Si 0.959 3.041 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.058 3.942 21 C -0.103 4.103 22 C -0.157 4.157 23 C 0.058 3.942 24 O -0.323 6.323 25 C 0.404 3.596 26 F -0.211 7.211 27 F -0.209 7.209 28 H 0.055 0.945 29 H 0.124 0.876 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.034 0.966 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.143 0.857 43 H 0.147 0.853 44 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.681 -14.673 12.516 22.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.237 6.237 3 C 0.057 3.943 4 C -0.188 4.188 5 C -0.064 4.064 6 C -0.044 4.044 7 N -0.234 5.234 8 C -0.077 4.077 9 C -0.151 4.151 10 C 0.196 3.804 11 O -0.404 6.404 12 C -0.597 4.597 13 H 0.074 0.926 14 C -0.173 4.173 15 N -0.551 5.551 16 Si 0.785 3.215 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.069 4.069 21 C -0.122 4.122 22 C -0.175 4.175 23 C 0.014 3.986 24 O -0.241 6.241 25 C 0.315 3.685 26 F -0.193 7.193 27 F -0.190 7.190 28 H 0.074 0.926 29 H 0.142 0.858 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.053 0.947 38 H 0.221 0.779 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.164 0.836 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.505 -14.742 12.693 23.126 hybrid contribution -2.077 0.361 -0.656 2.208 sum 10.427 -14.381 12.037 21.458 Atomic orbital electron populations 1.23356 0.76518 1.05752 1.02025 1.86107 1.23113 1.25500 1.88983 1.18255 0.89008 0.85694 1.01354 1.21145 1.00590 0.90726 1.06290 1.19600 0.94116 0.93800 0.98912 1.21287 0.98450 0.94624 0.90067 1.65530 1.39983 1.06454 1.11389 1.22983 0.96191 0.93564 0.94977 1.22645 0.97927 0.98426 0.96083 1.19522 0.88910 0.85402 0.86610 1.86128 1.65864 1.64301 1.24119 1.21995 0.94710 1.48299 0.94692 0.92564 1.25708 1.02711 0.93726 0.95124 1.69816 1.37831 1.48274 0.99193 0.85493 0.80016 0.77809 0.78183 1.19373 1.20695 1.20392 1.22954 0.92701 0.94849 0.96421 1.20951 0.92807 0.98668 0.99761 1.21447 1.01163 0.90767 1.04138 1.18236 0.88511 0.85870 1.05964 1.86667 1.18282 1.30211 1.88956 1.24285 0.79220 0.94079 0.70921 1.93084 1.90611 1.82787 1.52825 1.93071 1.90633 1.82753 1.52591 0.92589 0.85777 0.91593 0.83709 0.88420 0.93097 0.93702 0.91379 0.93259 0.94719 0.77891 0.92241 0.91180 0.92934 0.83885 0.83561 0.74998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.23 10.28 -79.69 -0.82 -9.05 16 3 C 0.10 2.80 6.70 22.57 0.15 2.95 16 4 C -0.17 -4.46 7.38 22.35 0.16 -4.29 16 5 C -0.06 -1.75 4.65 -19.86 -0.09 -1.85 16 6 C 0.08 2.41 5.22 85.56 0.45 2.86 16 7 N -0.51 -19.00 5.48 -885.57 -4.85 -23.86 16 8 C 0.05 1.94 4.96 86.42 0.43 2.37 16 9 C -0.11 -5.29 5.54 31.49 0.17 -5.12 16 10 C 0.24 11.78 1.05 -10.64 -0.01 11.77 16 11 O -0.60 -32.27 12.94 -148.98 -1.93 -34.20 16 12 C -0.56 -29.72 8.08 25.60 0.21 -29.51 16 13 H 0.06 2.96 7.58 -2.91 -0.02 2.93 16 14 C 0.03 1.46 5.02 84.65 0.43 1.88 16 15 N -0.91 -49.03 10.82 21.45 0.23 -48.80 16 16 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 17 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.06 2.47 5.77 86.45 0.50 2.97 16 21 C -0.10 -2.71 9.69 22.28 0.22 -2.49 16 22 C -0.16 -4.01 8.26 22.35 0.18 -3.82 16 23 C 0.06 1.56 6.50 22.57 0.15 1.70 16 24 O -0.32 -7.43 10.22 -79.70 -0.81 -8.25 16 25 C 0.40 6.09 5.98 113.37 0.68 6.77 16 26 F -0.21 -4.10 15.58 44.97 0.70 -3.40 16 27 F -0.21 -3.71 15.59 44.97 0.70 -3.01 16 28 H 0.06 1.03 7.68 -2.39 -0.02 1.01 16 29 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.07 1.03 7.65 -2.39 -0.02 1.01 16 31 H 0.15 3.47 5.65 -2.91 -0.02 3.45 16 32 H 0.10 2.55 8.08 -2.39 -0.02 2.53 16 33 H 0.05 1.40 7.82 -2.39 -0.02 1.38 16 34 H 0.04 1.59 7.13 -2.38 -0.02 1.57 16 35 H 0.07 2.56 7.76 -2.39 -0.02 2.54 16 36 H 0.05 2.49 7.24 -2.39 -0.02 2.47 16 37 H 0.03 1.72 7.98 -2.39 -0.02 1.71 16 38 H 0.37 20.59 7.33 -74.06 -0.54 20.04 16 39 H 0.27 13.72 8.31 -92.71 -0.77 12.94 16 40 H 0.07 2.99 8.08 -2.39 -0.02 2.98 16 41 H 0.05 2.13 7.38 -2.39 -0.02 2.11 16 42 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 43 H 0.15 3.38 5.10 -2.91 -0.01 3.36 16 44 H 0.23 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -65.28 361.49 0.48 -64.79 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.51 Total: 34.38 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 4.73 Total: -12.38 kcal Atomic # 7 Polarization: -68.03 SS G_CDS: -4.62 Total: -72.65 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -3.56 Total: -51.49 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 1.40 Total: -6.41 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -65.28 0.48 -64.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146339.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.773 kcal (2) G-P(sol) polarization free energy of solvation -65.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds