Wall clock time and date at job start Wed Apr 1 2020 02:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35990 * 117.00367 * 2 1 4 4 C 1.38567 * 120.07231 * 359.97438 * 3 2 1 5 5 C 1.38233 * 120.00014 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.14958 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.14567 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00231 * 179.72956 * 7 6 5 9 9 N 1.46896 * 109.46490 * 259.99854 * 8 7 6 10 10 C 1.47443 * 111.00538 * 69.87829 * 9 8 7 11 11 C 1.54312 * 107.23944 * 123.25291 * 10 9 8 12 12 C 1.55141 * 103.02058 * 22.28255 * 11 10 9 13 13 O 1.42902 * 110.98935 * 82.47383 * 12 11 10 14 14 C 1.50690 * 110.99449 * 206.25559 * 12 11 10 15 15 H 1.08006 * 120.00367 * 118.54869 * 14 12 11 16 16 C 1.37878 * 120.00003 * 298.54756 * 14 12 11 17 17 N 1.31509 * 120.00333 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99864 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47259 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47247 * 120.00231 * 18 16 14 21 21 H 1.48504 * 109.47059 * 240.00208 * 18 16 14 22 22 C 1.47852 * 110.99796 * 190.71815 * 9 8 7 23 23 C 1.38570 * 119.99723 * 359.97438 * 7 6 5 24 24 O 1.35992 * 120.07299 * 179.97438 * 23 7 6 25 25 C 1.42899 * 117.00077 * 90.00130 * 24 23 7 26 26 F 1.39896 * 109.47007 * 300.00316 * 25 24 23 27 27 F 1.39904 * 109.46770 * 60.00200 * 25 24 23 28 28 H 1.09002 * 109.46587 * 59.99788 * 1 2 3 29 29 H 1.08994 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46812 * 300.00600 * 1 2 3 31 31 H 1.07999 * 119.99852 * 0.04856 * 4 3 2 32 32 H 1.08007 * 119.92692 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93042 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47004 * 19.99891 * 8 7 6 35 35 H 1.08997 * 109.47179 * 140.00012 * 8 7 6 36 36 H 1.08995 * 109.88624 * 242.66151 * 10 9 8 37 37 H 1.08999 * 109.88391 * 3.84129 * 10 9 8 38 38 H 1.09003 * 110.71093 * 140.67080 * 11 10 9 39 39 H 1.09000 * 110.70533 * 263.72932 * 11 10 9 40 40 H 0.96706 * 113.99733 * 61.45513 * 13 12 11 41 41 H 0.96998 * 120.00359 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.37201 * 332.46439 * 22 9 8 43 43 H 1.08996 * 110.37852 * 94.80743 * 22 9 8 44 44 H 1.08997 * 109.47422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2934 2.3748 -0.0005 5 6 1.9226 3.6056 -0.0011 6 6 3.3031 3.6797 -0.0005 7 6 4.0604 2.5232 0.0000 8 6 5.5651 2.6078 -0.0056 9 7 6.0625 2.3913 -1.3707 10 6 5.7244 3.5307 -2.2433 11 6 7.0471 4.0626 -2.8339 12 6 7.9994 2.8439 -2.7121 13 8 7.8132 1.9379 -3.8014 14 6 9.4364 3.2884 -2.6230 15 1 10.0206 3.0550 -1.7451 16 6 10.0058 3.9931 -3.6624 17 7 9.2945 4.2778 -4.7313 18 14 11.7871 4.5448 -3.5517 19 1 12.3621 4.1039 -2.2555 20 1 12.5615 3.9441 -4.6672 21 1 11.8533 6.0254 -3.6440 22 6 7.5301 2.2123 -1.3777 23 6 3.4360 1.2862 0.0005 24 8 4.1795 0.1475 0.0005 25 6 4.5347 -0.3954 1.2738 26 9 5.2858 0.5440 1.9882 27 9 3.3729 -0.7051 1.9891 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2148 2.3196 -0.0002 32 1 1.3344 4.5114 -0.0011 33 1 3.7910 4.6433 -0.0005 34 1 5.8749 3.5932 0.3420 35 1 5.9744 1.8440 0.6556 36 1 5.0661 3.2000 -3.0466 37 1 5.2377 4.3125 -1.6603 38 1 6.9163 4.3466 -3.8781 39 1 7.4185 4.9050 -2.2505 40 1 8.0024 2.3214 -4.6687 41 1 9.6951 4.7732 -5.4627 42 1 7.9799 2.7332 -0.5325 43 1 7.7833 1.1525 -1.3497 44 1 5.1251 -1.3005 1.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:13 Heat of formation + Delta-G solvation = -192.778775 kcal Electronic energy + Delta-G solvation = -31660.592426 eV Core-core repulsion = 27021.486807 eV Total energy + Delta-G solvation = -4639.105619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.04027 -47.15889 -40.58942 -38.63515 -37.90484 -36.92558 -34.68198 -32.09778 -31.65061 -30.14252 -29.03018 -27.99052 -27.45607 -25.99995 -25.27005 -23.91588 -22.38959 -21.38181 -19.88259 -19.51367 -18.84828 -18.09829 -17.84125 -17.50928 -16.93292 -16.48783 -15.94708 -15.66399 -15.14666 -14.86480 -14.79880 -14.48662 -14.25835 -14.11496 -13.87102 -13.80501 -13.55332 -13.39670 -12.83163 -12.56526 -12.44204 -12.22264 -12.20839 -12.13618 -11.88862 -11.53395 -11.37013 -11.28108 -11.18900 -10.98842 -10.93922 -10.75568 -10.52021 -10.37089 -10.22380 -9.78729 -9.16392 -8.76429 -8.55944 -8.23665 -8.01294 -7.51831 -6.17993 -4.26031 1.02006 1.30864 2.98977 3.11628 3.22401 3.31193 3.35369 3.64260 3.70271 4.31769 4.58140 4.65182 4.70799 4.77499 4.84997 4.95553 4.97507 5.08156 5.14163 5.27148 5.28073 5.30370 5.48588 5.69373 5.80721 5.95927 6.02743 6.09241 6.16370 6.20880 6.30610 6.46871 6.51085 6.54478 6.73619 6.87203 6.93444 7.13215 7.38760 7.46134 7.53763 7.70346 7.81069 7.86899 8.21432 8.76618 9.42683 9.57442 10.88806 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.003109 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.949373 B = 9003.039651 C = 9614.361523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.126 3.874 4 C -0.210 4.210 5 C -0.073 4.073 6 C -0.144 4.144 7 C -0.024 4.024 8 C 0.077 3.923 9 N -0.513 5.513 10 C 0.044 3.956 11 C -0.144 4.144 12 C 0.252 3.748 13 O -0.577 6.577 14 C -0.534 4.534 15 H 0.061 0.939 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.061 3.939 23 C 0.056 3.944 24 O -0.301 6.301 25 C 0.402 3.598 26 F -0.204 7.204 27 F -0.206 7.206 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.054 0.946 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.036 0.964 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.376 0.624 41 H 0.265 0.735 42 H 0.046 0.954 43 H 0.071 0.929 44 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.834 -4.600 11.355 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.215 6.215 3 C 0.080 3.920 4 C -0.229 4.229 5 C -0.091 4.091 6 C -0.163 4.163 7 C -0.025 4.025 8 C -0.051 4.051 9 N -0.237 5.237 10 C -0.084 4.084 11 C -0.183 4.183 12 C 0.212 3.788 13 O -0.385 6.385 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.131 4.131 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.066 4.066 23 C 0.012 3.988 24 O -0.220 6.220 25 C 0.312 3.688 26 F -0.186 7.186 27 F -0.187 7.187 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.061 0.939 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.225 0.775 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -17.086 -5.661 11.381 21.296 hybrid contribution 1.055 1.870 0.080 2.149 sum -16.031 -3.791 11.461 20.068 Atomic orbital electron populations 1.23067 0.78611 1.03940 1.01190 1.86181 1.21087 1.26052 1.88210 1.19289 0.91220 0.85085 0.96384 1.21075 0.99921 0.91843 1.10089 1.20966 0.94463 0.97019 0.96625 1.20959 0.93568 0.97876 1.03919 1.20037 0.96769 0.91075 0.94629 1.21372 0.89264 1.01139 0.93278 1.63629 1.13841 1.40111 1.06130 1.22873 0.98821 0.90701 0.96005 1.23250 0.93795 0.99843 1.01391 1.19521 0.91837 0.84338 0.83132 1.86158 1.91744 1.42368 1.18232 1.21589 0.96886 1.35158 1.03652 0.92088 1.24998 0.98200 0.94808 0.95110 1.69750 1.36397 1.40331 1.06875 0.86441 0.84542 0.78170 0.78241 1.19693 1.20818 1.20987 1.22990 0.84780 1.00753 0.98067 1.17550 0.85876 0.85633 1.09758 1.86821 1.69751 1.39452 1.25959 1.23632 0.79203 0.89703 0.76238 1.93002 1.76573 1.69183 1.79862 1.93068 1.52769 1.93160 1.79750 0.92611 0.88220 0.92784 0.85050 0.85369 0.85258 0.93931 0.89012 0.91876 0.94558 0.90522 0.92742 0.77520 0.92496 0.93585 0.91053 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.99 9.74 -34.21 -0.33 -4.32 16 3 C 0.13 1.79 6.45 -39.12 -0.25 1.54 16 4 C -0.21 -2.45 9.04 -39.46 -0.36 -2.80 16 5 C -0.07 -0.83 10.04 -39.58 -0.40 -1.22 16 6 C -0.14 -1.94 8.82 -39.57 -0.35 -2.29 16 7 C -0.02 -0.38 4.80 -104.50 -0.50 -0.88 16 8 C 0.08 1.32 4.30 -4.98 -0.02 1.30 16 9 N -0.51 -10.39 5.15 -232.70 -1.20 -11.59 16 10 C 0.04 0.89 6.40 -2.84 -0.02 0.87 16 11 C -0.14 -3.35 5.37 -24.91 -0.13 -3.49 16 12 C 0.25 6.34 0.87 -89.64 -0.08 6.26 16 13 O -0.58 -15.41 13.16 -35.23 -0.46 -15.88 16 14 C -0.53 -14.40 8.27 -34.44 -0.28 -14.68 16 15 H 0.06 1.64 7.79 -52.48 -0.41 1.23 16 16 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 17 N -0.89 -23.98 10.75 55.43 0.60 -23.39 16 18 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.06 1.36 5.86 -2.29 -0.01 1.34 16 23 C 0.06 0.90 5.32 -39.12 -0.21 0.69 16 24 O -0.30 -4.83 9.49 -34.22 -0.32 -5.15 16 25 C 0.40 5.07 6.34 101.05 0.64 5.71 16 26 F -0.20 -2.81 14.41 2.25 0.03 -2.78 16 27 F -0.21 -2.73 16.47 2.25 0.04 -2.69 16 28 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 31 H 0.13 1.14 6.30 -52.49 -0.33 0.81 16 32 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.13 1.57 7.65 -52.48 -0.40 1.17 16 34 H 0.04 0.70 7.82 -51.93 -0.41 0.30 16 35 H 0.09 1.55 5.05 -51.93 -0.26 1.28 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.04 0.66 6.21 -51.93 -0.32 0.33 16 38 H 0.08 1.90 7.54 -51.93 -0.39 1.51 16 39 H 0.05 1.29 8.04 -51.93 -0.42 0.87 16 40 H 0.38 10.07 7.56 45.56 0.34 10.41 16 41 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 42 H 0.05 0.98 7.70 -51.93 -0.40 0.59 16 43 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 44 H 0.17 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 362.89 15.07 5.47 5.47 Total: -1.00 -31.09 362.89 -7.32 -38.42 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.04 Total: 10.84 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.08 Total: -4.64 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: -0.60 Total: -34.97 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.12 Total: -25.35 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.09 -7.32 -38.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.362 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds