Wall clock time and date at job start Wed Apr 1 2020 02:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35990 * 117.00367 * 2 1 4 4 C 1.38567 * 120.07231 * 359.97438 * 3 2 1 5 5 C 1.38233 * 120.00014 * 180.02562 * 4 3 2 6 6 C 1.38251 * 120.14958 * 359.97438 * 5 4 3 7 7 C 1.38245 * 120.14567 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00231 * 179.72956 * 7 6 5 9 9 N 1.46896 * 109.46490 * 259.99854 * 8 7 6 10 10 C 1.47443 * 111.00538 * 69.87829 * 9 8 7 11 11 C 1.54312 * 107.23944 * 123.25291 * 10 9 8 12 12 C 1.55141 * 103.02058 * 22.28255 * 11 10 9 13 13 O 1.42902 * 110.98935 * 82.47383 * 12 11 10 14 14 C 1.50690 * 110.99449 * 206.25559 * 12 11 10 15 15 H 1.08006 * 120.00367 * 118.54869 * 14 12 11 16 16 C 1.37878 * 120.00003 * 298.54756 * 14 12 11 17 17 N 1.31509 * 120.00333 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99864 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47259 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.47247 * 120.00231 * 18 16 14 21 21 H 1.48504 * 109.47059 * 240.00208 * 18 16 14 22 22 C 1.47852 * 110.99796 * 190.71815 * 9 8 7 23 23 C 1.38570 * 119.99723 * 359.97438 * 7 6 5 24 24 O 1.35992 * 120.07299 * 179.97438 * 23 7 6 25 25 C 1.42899 * 117.00077 * 90.00130 * 24 23 7 26 26 F 1.39896 * 109.47007 * 300.00316 * 25 24 23 27 27 F 1.39904 * 109.46770 * 60.00200 * 25 24 23 28 28 H 1.09002 * 109.46587 * 59.99788 * 1 2 3 29 29 H 1.08994 * 109.47083 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46812 * 300.00600 * 1 2 3 31 31 H 1.07999 * 119.99852 * 0.04856 * 4 3 2 32 32 H 1.08007 * 119.92692 * 180.02562 * 5 4 3 33 33 H 1.08004 * 119.93042 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47004 * 19.99891 * 8 7 6 35 35 H 1.08997 * 109.47179 * 140.00012 * 8 7 6 36 36 H 1.08995 * 109.88624 * 242.66151 * 10 9 8 37 37 H 1.08999 * 109.88391 * 3.84129 * 10 9 8 38 38 H 1.09003 * 110.71093 * 140.67080 * 11 10 9 39 39 H 1.09000 * 110.70533 * 263.72932 * 11 10 9 40 40 H 0.96706 * 113.99733 * 61.45513 * 13 12 11 41 41 H 0.96998 * 120.00359 * 180.02562 * 17 16 14 42 42 H 1.09001 * 110.37201 * 332.46439 * 22 9 8 43 43 H 1.08996 * 110.37852 * 94.80743 * 22 9 8 44 44 H 1.08997 * 109.47422 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 1.2934 2.3748 -0.0005 5 6 1.9226 3.6056 -0.0011 6 6 3.3031 3.6797 -0.0005 7 6 4.0604 2.5232 0.0000 8 6 5.5651 2.6078 -0.0056 9 7 6.0625 2.3913 -1.3707 10 6 5.7244 3.5307 -2.2433 11 6 7.0471 4.0626 -2.8339 12 6 7.9994 2.8439 -2.7121 13 8 7.8132 1.9379 -3.8014 14 6 9.4364 3.2884 -2.6230 15 1 10.0206 3.0550 -1.7451 16 6 10.0058 3.9931 -3.6624 17 7 9.2945 4.2778 -4.7313 18 14 11.7871 4.5448 -3.5517 19 1 12.3621 4.1039 -2.2555 20 1 12.5615 3.9441 -4.6672 21 1 11.8533 6.0254 -3.6440 22 6 7.5301 2.2123 -1.3777 23 6 3.4360 1.2862 0.0005 24 8 4.1795 0.1475 0.0005 25 6 4.5347 -0.3954 1.2738 26 9 5.2858 0.5440 1.9882 27 9 3.3729 -0.7051 1.9891 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2148 2.3196 -0.0002 32 1 1.3344 4.5114 -0.0011 33 1 3.7910 4.6433 -0.0005 34 1 5.8749 3.5932 0.3420 35 1 5.9744 1.8440 0.6556 36 1 5.0661 3.2000 -3.0466 37 1 5.2377 4.3125 -1.6603 38 1 6.9163 4.3466 -3.8781 39 1 7.4185 4.9050 -2.2505 40 1 8.0024 2.3214 -4.6687 41 1 9.6951 4.7732 -5.4627 42 1 7.9799 2.7332 -0.5325 43 1 7.7833 1.1525 -1.3497 44 1 5.1251 -1.3005 1.1310 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592522424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:12 Heat of formation + Delta-G solvation = -214.855964 kcal Electronic energy + Delta-G solvation = -31661.549764 eV Core-core repulsion = 27021.486807 eV Total energy + Delta-G solvation = -4640.062958 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.04877 -48.17356 -41.58517 -40.11659 -39.09030 -38.00164 -36.44481 -34.16803 -33.01265 -31.07483 -30.55017 -29.82229 -28.21480 -27.27859 -26.59690 -25.55879 -23.38384 -22.56822 -21.42763 -21.38182 -19.89794 -19.13999 -18.97957 -18.80354 -18.41274 -17.51578 -16.95845 -16.87976 -16.75748 -16.52158 -16.24726 -15.79672 -15.62659 -15.23761 -15.13676 -14.88946 -14.67937 -14.50025 -14.29172 -14.09069 -13.80827 -13.54852 -13.36953 -13.21179 -13.15084 -13.12756 -12.97364 -12.77899 -12.66344 -12.41531 -12.22638 -12.19528 -12.15924 -11.94692 -11.66184 -11.60944 -11.08147 -10.59737 -10.07149 -9.77149 -9.19465 -9.11385 -8.20173 -6.36078 0.03229 0.31786 1.39464 1.42939 1.53499 2.06021 2.28764 2.38854 2.67164 2.69801 3.04108 3.29241 3.65195 3.74345 3.81210 3.90327 3.98954 4.08010 4.08879 4.16147 4.31291 4.33446 4.39811 4.41145 4.45975 4.51114 4.63693 4.73630 4.77020 4.81221 4.91643 5.08335 5.16265 5.27328 5.32958 5.44654 5.49874 5.55939 5.58805 5.81407 5.90715 5.98565 6.23262 6.29786 6.46307 6.69770 7.35449 7.47406 8.85196 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018826 B = 0.003109 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.949373 B = 9003.039651 C = 9614.361523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.325 6.325 3 C 0.113 3.887 4 C -0.203 4.203 5 C -0.066 4.066 6 C -0.153 4.153 7 C -0.048 4.048 8 C 0.081 3.919 9 N -0.520 5.520 10 C 0.056 3.944 11 C -0.133 4.133 12 C 0.235 3.765 13 O -0.588 6.588 14 C -0.560 4.560 15 H 0.054 0.946 16 C 0.031 3.969 17 N -0.910 5.910 18 Si 0.960 3.040 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.070 3.930 23 C 0.028 3.972 24 O -0.325 6.325 25 C 0.397 3.603 26 F -0.213 7.213 27 F -0.210 7.210 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.140 0.860 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.371 0.629 41 H 0.268 0.732 42 H 0.051 0.949 43 H 0.061 0.939 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.407 -3.899 12.220 22.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.066 3.934 4 C -0.221 4.221 5 C -0.083 4.083 6 C -0.171 4.171 7 C -0.049 4.049 8 C -0.046 4.046 9 N -0.244 5.244 10 C -0.071 4.071 11 C -0.172 4.172 12 C 0.195 3.805 13 O -0.395 6.395 14 C -0.598 4.598 15 H 0.072 0.928 16 C -0.170 4.170 17 N -0.549 5.549 18 Si 0.785 3.215 19 H -0.195 1.195 20 H -0.205 1.205 21 H -0.203 1.203 22 C -0.057 4.057 23 C -0.016 4.016 24 O -0.244 6.244 25 C 0.308 3.692 26 F -0.195 7.195 27 F -0.192 7.192 28 H 0.086 0.914 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.158 0.842 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.219 0.781 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -18.681 -4.965 12.260 22.890 hybrid contribution 1.435 1.604 -0.172 2.159 sum -17.246 -3.361 12.089 21.327 Atomic orbital electron populations 1.23391 0.76234 1.05631 1.02447 1.86148 1.23603 1.25991 1.88144 1.19469 0.90961 0.86293 0.96635 1.21497 1.01488 0.91025 1.08122 1.21376 0.93836 0.98391 0.94721 1.21187 0.94672 0.97492 1.03781 1.19970 0.95731 0.92116 0.97086 1.21341 0.90780 1.01285 0.91181 1.63547 1.12256 1.40280 1.08271 1.22713 0.97015 0.91302 0.96084 1.23042 0.95080 0.98916 1.00186 1.19775 0.91826 0.85171 0.83717 1.86152 1.91790 1.43147 1.18400 1.21829 0.98044 1.36045 1.03880 0.92761 1.25690 1.01851 0.94708 0.94766 1.69837 1.37689 1.40260 1.07152 0.85487 0.79995 0.77857 0.78114 1.19535 1.20550 1.20334 1.22813 0.86316 0.99930 0.96682 1.17879 0.87027 0.85647 1.11046 1.86764 1.70101 1.39808 1.27699 1.24242 0.79256 0.90439 0.75271 1.92974 1.76709 1.69824 1.80003 1.93047 1.53281 1.93108 1.79804 0.91435 0.86539 0.91266 0.81825 0.81735 0.84206 0.93389 0.89205 0.92731 0.91990 0.92530 0.93517 0.78110 0.92260 0.93111 0.92015 0.77386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.15 9.74 -79.57 -0.78 -8.92 16 3 C 0.11 3.03 6.45 22.57 0.15 3.18 16 4 C -0.20 -4.11 9.04 22.35 0.20 -3.90 16 5 C -0.07 -1.28 10.04 22.27 0.22 -1.05 16 6 C -0.15 -3.79 8.82 22.27 0.20 -3.59 16 7 C -0.05 -1.47 4.80 -19.78 -0.09 -1.57 16 8 C 0.08 2.77 4.30 85.56 0.37 3.13 16 9 N -0.52 -21.08 5.15 -890.12 -4.58 -25.66 16 10 C 0.06 2.28 6.40 86.64 0.55 2.84 16 11 C -0.13 -6.30 5.37 31.77 0.17 -6.13 16 12 C 0.24 12.05 0.87 -10.16 -0.01 12.04 16 13 O -0.59 -32.19 13.16 -148.98 -1.96 -34.15 16 14 C -0.56 -30.59 8.27 25.60 0.21 -30.38 16 15 H 0.05 2.96 7.79 -2.91 -0.02 2.93 16 16 C 0.03 1.63 5.29 84.66 0.45 2.08 16 17 N -0.91 -49.25 10.75 21.45 0.23 -49.02 16 18 Si 0.96 42.51 29.54 68.60 2.03 44.54 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 22 C 0.07 3.16 5.86 86.77 0.51 3.67 16 23 C 0.03 0.88 5.32 22.57 0.12 1.00 16 24 O -0.32 -10.43 9.49 -79.59 -0.76 -11.19 16 25 C 0.40 9.90 6.34 113.37 0.72 10.61 16 26 F -0.21 -5.86 14.41 44.97 0.65 -5.21 16 27 F -0.21 -5.49 16.47 44.97 0.74 -4.75 16 28 H 0.07 0.77 7.66 -2.39 -0.02 0.76 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 31 H 0.16 2.14 6.30 -2.91 -0.02 2.12 16 32 H 0.17 1.97 8.06 -2.91 -0.02 1.94 16 33 H 0.14 3.06 7.65 -2.91 -0.02 3.04 16 34 H 0.05 1.55 7.82 -2.39 -0.02 1.53 16 35 H 0.09 3.05 5.05 -2.39 -0.01 3.04 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.06 2.17 6.21 -2.39 -0.01 2.15 16 38 H 0.06 2.87 7.54 -2.39 -0.02 2.85 16 39 H 0.05 2.23 8.04 -2.39 -0.02 2.21 16 40 H 0.37 20.51 7.56 -74.05 -0.56 19.95 16 41 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 42 H 0.05 2.20 7.70 -2.39 -0.02 2.18 16 43 H 0.06 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.21 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -67.91 362.89 0.94 -66.97 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.49 Total: 34.11 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.88 Total: -6.71 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -4.35 Total: -74.68 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -3.49 Total: -54.26 kcal Atomic # 9 Polarization: -11.35 SS G_CDS: 1.39 Total: -9.97 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.91 0.94 -66.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.884 kcal (2) G-P(sol) polarization free energy of solvation -67.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds