Wall clock time and date at job start Wed Apr 1 2020 02:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35997 * 116.99945 * 2 1 4 4 C 1.38567 * 120.07387 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.00076 * 179.97438 * 4 3 2 6 6 C 1.38247 * 120.14536 * 0.02562 * 5 4 3 7 7 C 1.38239 * 120.15033 * 0.23271 * 6 5 4 8 8 C 1.50698 * 120.00259 * 179.74720 * 7 6 5 9 9 N 1.46900 * 109.47142 * 259.99594 * 8 7 6 10 10 C 1.48539 * 110.99521 * 52.60278 * 9 8 7 11 11 C 1.54947 * 103.22330 * 159.71978 * 10 9 8 12 12 C 1.54593 * 102.92266 * 322.59032 * 11 10 9 13 13 O 1.42903 * 110.30449 * 263.04064 * 12 11 10 14 14 C 1.50697 * 110.31021 * 140.87667 * 12 11 10 15 15 H 1.08002 * 119.99869 * 3.69873 * 14 12 11 16 16 C 1.37871 * 119.99834 * 183.70647 * 14 12 11 17 17 N 1.31519 * 120.00146 * 186.05740 * 16 14 12 18 18 Si 1.86803 * 120.00262 * 6.05099 * 16 14 12 19 19 H 1.48503 * 109.47032 * 84.77711 * 18 16 14 20 20 H 1.48496 * 109.47216 * 204.77470 * 18 16 14 21 21 H 1.48496 * 109.47044 * 324.77781 * 18 16 14 22 22 C 1.47897 * 111.00305 * 169.99865 * 9 8 7 23 23 C 1.38573 * 119.99391 * 359.49074 * 7 6 5 24 24 O 1.35994 * 120.06914 * 180.25521 * 23 7 6 25 25 C 1.42899 * 116.99945 * 270.27341 * 24 23 7 26 26 F 1.39901 * 109.47302 * 300.00238 * 25 24 23 27 27 F 1.39905 * 109.46960 * 60.00718 * 25 24 23 28 28 H 1.08994 * 109.47223 * 299.99780 * 1 2 3 29 29 H 1.09004 * 109.46783 * 59.99712 * 1 2 3 30 30 H 1.09001 * 109.46593 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99702 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.92480 * 179.97438 * 5 4 3 33 33 H 1.08004 * 119.92794 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47330 * 19.99748 * 8 7 6 35 35 H 1.09001 * 109.47076 * 139.99838 * 8 7 6 36 36 H 1.09000 * 110.66947 * 278.15115 * 10 9 8 37 37 H 1.08997 * 110.66835 * 41.29355 * 10 9 8 38 38 H 1.09002 * 110.72030 * 204.22608 * 11 10 9 39 39 H 1.08999 * 110.87602 * 81.01911 * 11 10 9 40 40 H 0.96696 * 114.00328 * 295.71279 * 13 12 11 41 41 H 0.96992 * 120.00597 * 179.97438 * 17 16 14 42 42 H 1.09006 * 109.91598 * 333.51144 * 22 9 8 43 43 H 1.09000 * 109.91977 * 94.80612 * 22 9 8 44 44 H 1.09001 * 109.47256 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3029 3.6799 0.0005 7 6 4.0603 2.5234 -0.0054 8 6 5.5649 2.6081 -0.0117 9 7 6.0614 2.3985 -1.3783 10 6 5.3882 3.3136 -2.3353 11 6 6.3583 3.3393 -3.5432 12 6 7.7495 3.3038 -2.8702 13 8 8.2812 4.6257 -2.7604 14 6 8.6884 2.4249 -3.6557 15 1 8.3614 1.9790 -4.5835 16 6 9.9646 2.1899 -3.1900 17 7 10.8225 1.5227 -3.9306 18 14 10.4754 2.8194 -1.5070 19 1 10.0642 1.8421 -0.4673 20 1 11.9499 2.9911 -1.4694 21 1 9.8181 4.1253 -1.2466 22 6 7.5045 2.7084 -1.4713 23 6 3.4359 1.2864 -0.0001 24 8 4.1795 0.1478 -0.0007 25 6 4.5341 -0.3948 -1.2742 26 9 3.3722 -0.7044 -1.9892 27 9 5.2851 0.5448 -1.9887 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 0.2146 2.3196 0.0005 32 1 1.3341 4.5115 0.0011 33 1 3.7908 4.6434 0.0005 34 1 5.8749 3.5918 0.3406 35 1 5.9747 1.8410 0.6454 36 1 4.4172 2.9156 -2.6301 37 1 5.2826 4.3098 -1.9056 38 1 6.2319 4.2556 -4.1199 39 1 6.2136 2.4638 -4.1763 40 1 8.4558 5.0513 -3.6109 41 1 11.7204 1.3577 -3.6032 42 1 7.7785 3.4342 -0.7056 43 1 8.0888 1.7965 -1.3484 44 1 5.1247 -1.2999 -1.1319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592522425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:12:17 Heat of formation + Delta-G solvation = -157.602639 kcal Electronic energy + Delta-G solvation = -32746.392598 eV Core-core repulsion = 28108.812331 eV Total energy + Delta-G solvation = -4637.580267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.41898 -46.45764 -40.63423 -38.84520 -37.98372 -36.93477 -35.01971 -32.32967 -31.84719 -30.15062 -29.45510 -28.21525 -27.49696 -25.87781 -25.06474 -23.71315 -22.35419 -21.63785 -20.50629 -19.52541 -18.54560 -17.85829 -17.63575 -17.25455 -16.98310 -16.42114 -15.89689 -15.58630 -15.49338 -15.19597 -14.65985 -14.51432 -14.26632 -14.01129 -13.71123 -13.39318 -13.20449 -13.04006 -12.83651 -12.61623 -12.58400 -12.36145 -12.23126 -12.12710 -11.82799 -11.70849 -11.51255 -11.43118 -11.24123 -11.19031 -10.86545 -10.79473 -10.60673 -10.23467 -10.04858 -9.93501 -8.96230 -8.85706 -8.62947 -8.32143 -8.25510 -7.65111 -6.11771 -4.19698 0.97155 1.24147 3.04151 3.11849 3.34957 3.45114 3.64366 3.73408 4.12651 4.48562 4.52182 4.61907 4.75198 4.88783 4.92937 4.97402 5.01595 5.12680 5.18116 5.19779 5.25804 5.37082 5.41790 5.47267 5.64993 5.68495 5.87886 5.95913 6.00970 6.06853 6.19060 6.25340 6.26878 6.40190 6.45954 6.60238 6.73523 6.88851 6.97772 7.17765 7.39074 7.47067 7.61316 7.66555 8.31581 8.87184 9.03196 9.53062 10.99231 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.018692 B = 0.004033 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.632926 B = 6941.575003 C = 7533.209681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.301 6.301 3 C 0.125 3.875 4 C -0.208 4.208 5 C -0.075 4.075 6 C -0.143 4.143 7 C -0.036 4.036 8 C 0.078 3.922 9 N -0.483 5.483 10 C 0.041 3.959 11 C -0.132 4.132 12 C 0.213 3.787 13 O -0.582 6.582 14 C -0.541 4.541 15 H 0.076 0.924 16 C 0.085 3.915 17 N -0.891 5.891 18 Si 0.869 3.131 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.232 1.232 22 C 0.044 3.956 23 C 0.060 3.940 24 O -0.325 6.325 25 C 0.390 3.610 26 F -0.214 7.214 27 F -0.143 7.143 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.035 0.965 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.364 0.636 41 H 0.265 0.735 42 H 0.035 0.965 43 H 0.091 0.909 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 0.483 8.904 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.079 3.921 4 C -0.227 4.227 5 C -0.094 4.094 6 C -0.161 4.161 7 C -0.037 4.037 8 C -0.049 4.049 9 N -0.206 5.206 10 C -0.086 4.086 11 C -0.170 4.170 12 C 0.173 3.827 13 O -0.389 6.389 14 C -0.578 4.578 15 H 0.094 0.906 16 C -0.119 4.119 17 N -0.528 5.528 18 Si 0.697 3.303 19 H -0.209 1.209 20 H -0.227 1.227 21 H -0.155 1.155 22 C -0.083 4.083 23 C 0.016 3.984 24 O -0.244 6.244 25 C 0.300 3.700 26 F -0.196 7.196 27 F -0.124 7.124 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.210 0.790 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.069 -0.548 9.514 22.217 hybrid contribution 0.188 1.276 0.240 1.312 sum -19.881 0.728 9.755 22.157 Atomic orbital electron populations 1.23070 0.78637 1.03972 1.01144 1.86197 1.21040 1.26010 1.88163 1.19309 0.91294 0.85069 0.96445 1.21099 0.99954 0.91857 1.09780 1.20943 0.94413 0.97010 0.96994 1.20939 0.93588 0.97764 1.03849 1.19974 0.96389 0.91314 0.96036 1.21264 0.89217 1.01029 0.93427 1.65405 1.04003 1.48465 1.02767 1.23136 0.97839 0.93727 0.93919 1.23027 0.96198 1.01217 0.96575 1.19818 0.90311 0.81366 0.91157 1.86462 1.86414 1.31374 1.34627 1.21351 0.96917 1.30434 1.09118 0.90569 1.24980 0.96098 0.93379 0.97413 1.69942 1.05598 1.40057 1.37234 0.87132 0.76852 0.81847 0.84510 1.20931 1.22655 1.15452 1.23295 0.87851 0.99698 0.97498 1.17555 0.86037 0.85969 1.08843 1.86633 1.69819 1.39226 1.28769 1.23476 0.79085 0.90535 0.76860 1.93036 1.53461 1.93408 1.79691 1.93534 1.74630 1.65561 1.78671 0.92763 0.92674 0.88206 0.85071 0.85396 0.85350 0.93558 0.89389 0.91548 0.94665 0.92389 0.90557 0.78955 0.92584 0.94699 0.89136 0.82458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.30 -3.92 9.74 -34.23 -0.33 -4.25 16 3 C 0.13 1.71 6.45 -39.12 -0.25 1.46 16 4 C -0.21 -2.29 9.04 -39.46 -0.36 -2.65 16 5 C -0.08 -0.80 10.04 -39.58 -0.40 -1.20 16 6 C -0.14 -1.77 8.96 -39.58 -0.35 -2.13 16 7 C -0.04 -0.53 4.21 -104.50 -0.44 -0.97 16 8 C 0.08 1.28 4.64 -4.98 -0.02 1.26 16 9 N -0.48 -9.13 1.59 -231.89 -0.37 -9.50 16 10 C 0.04 0.75 4.70 -1.89 -0.01 0.74 16 11 C -0.13 -2.66 6.34 -24.87 -0.16 -2.81 16 12 C 0.21 4.93 0.84 -90.42 -0.08 4.85 16 13 O -0.58 -13.14 10.44 -35.23 -0.37 -13.50 16 14 C -0.54 -14.86 8.67 -34.44 -0.30 -15.15 16 15 H 0.08 2.28 7.82 -52.49 -0.41 1.87 16 16 C 0.09 2.43 5.39 -17.82 -0.10 2.33 16 17 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 18 Si 0.87 21.82 23.85 -169.99 -4.05 17.77 16 19 H -0.28 -6.95 6.95 56.52 0.39 -6.55 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.23 -5.72 5.42 56.52 0.31 -5.42 16 22 C 0.04 0.97 4.12 -2.76 -0.01 0.95 16 23 C 0.06 0.93 5.33 -39.12 -0.21 0.72 16 24 O -0.32 -5.15 9.38 -34.22 -0.32 -5.48 16 25 C 0.39 5.93 6.35 101.05 0.64 6.57 16 26 F -0.21 -3.41 16.46 2.25 0.04 -3.37 16 27 F -0.14 -2.62 12.13 2.25 0.03 -2.60 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.13 1.08 6.30 -52.49 -0.33 0.74 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 1.44 8.04 -52.48 -0.42 1.02 16 34 H 0.05 0.73 7.67 -51.93 -0.40 0.33 16 35 H 0.09 1.44 7.84 -51.93 -0.41 1.03 16 36 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 37 H 0.04 0.60 7.82 -51.93 -0.41 0.20 16 38 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 39 H 0.08 1.63 7.70 -51.93 -0.40 1.23 16 40 H 0.36 7.20 9.07 45.56 0.41 7.61 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.03 0.77 6.53 -51.93 -0.34 0.43 16 43 H 0.09 2.20 5.79 -51.93 -0.30 1.89 16 44 H 0.16 1.83 8.14 -51.93 -0.42 1.41 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -33.23 350.38 -5.50 -38.73 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.13 Total: 7.93 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.05 Total: -4.83 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.41 Total: -35.69 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -1.02 Total: -23.23 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.06 Total: -5.97 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.05 Total: 17.77 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.23 -5.50 -38.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592522425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.868 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds