Wall clock time and date at job start Wed Apr 1 2020 02:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.53002 * 109.47079 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47030 * 180.02562 * 4 3 2 6 6 C 1.34941 * 126.03747 * 125.00194 * 5 4 3 7 7 C 1.35323 * 107.74923 * 179.97438 * 6 5 4 8 8 S 1.76198 * 126.04444 * 179.97438 * 7 6 5 9 9 O 1.42096 * 106.40222 * 203.53978 * 8 7 6 10 10 O 1.42105 * 106.39904 * 336.46076 * 8 7 6 11 11 N 1.65598 * 107.21541 * 89.99610 * 8 7 6 12 12 C 1.46929 * 120.63152 * 90.00737 * 11 8 7 13 13 C 1.53190 * 108.77304 * 233.58199 * 12 11 8 14 14 C 1.53035 * 109.31364 * 305.36334 * 13 12 11 15 15 C 1.53037 * 109.54227 * 61.36259 * 14 13 12 16 16 H 1.08999 * 109.49154 * 58.59030 * 15 14 13 17 17 C 1.50697 * 109.49993 * 178.64886 * 15 14 13 18 18 H 1.08007 * 119.99456 * 120.00029 * 17 15 14 19 19 C 1.37873 * 120.00472 * 300.00656 * 17 15 14 20 20 N 1.31517 * 119.99694 * 359.97438 * 19 17 15 21 21 Si 1.86803 * 120.00192 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47144 * 89.99852 * 21 19 17 23 23 H 1.48498 * 109.46811 * 209.99948 * 21 19 17 24 24 H 1.48507 * 109.46932 * 329.99640 * 21 19 17 25 25 C 1.46931 * 120.63291 * 269.71796 * 11 8 7 26 26 C 1.39871 * 107.91332 * 359.97438 * 7 6 5 27 27 N 1.30833 * 108.20920 * 359.74194 * 26 7 6 28 28 H 1.08997 * 109.47442 * 300.00036 * 1 2 3 29 29 H 1.08997 * 109.47171 * 60.00232 * 1 2 3 30 30 H 1.08999 * 109.46926 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47054 * 299.99711 * 3 2 1 32 32 H 1.09000 * 109.47187 * 59.99767 * 3 2 1 33 33 H 1.09004 * 109.46930 * 299.99773 * 4 3 2 34 34 H 1.09004 * 109.47059 * 59.99375 * 4 3 2 35 35 H 1.07999 * 126.13063 * 359.95088 * 6 5 4 36 36 H 1.09004 * 109.57993 * 353.36577 * 12 11 8 37 37 H 1.08993 * 109.59052 * 113.78976 * 12 11 8 38 38 H 1.09002 * 109.50157 * 65.31331 * 13 12 11 39 39 H 1.09006 * 109.49769 * 185.40882 * 13 12 11 40 40 H 1.08999 * 109.46123 * 181.38709 * 14 13 12 41 41 H 1.09008 * 109.45889 * 301.34301 * 14 13 12 42 42 H 0.96997 * 119.99670 * 180.02562 * 20 19 17 43 43 H 1.08996 * 109.58729 * 246.20608 * 25 11 8 44 44 H 1.09002 * 109.58543 * 6.63143 * 25 11 8 45 45 H 1.08002 * 125.89444 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0262 2.9932 0.8938 7 6 5.3266 4.2661 0.5463 8 16 6.4471 5.3338 1.3883 9 8 6.0595 6.6611 1.0608 10 8 6.5302 4.8555 2.7238 11 7 7.9426 5.1038 0.7154 12 6 8.3807 5.9131 -0.4299 13 6 8.8289 4.9743 -1.5544 14 6 9.8941 4.0151 -1.0185 15 6 9.2998 3.1685 0.1094 16 1 8.4396 2.6144 -0.2662 17 6 10.3396 2.2015 0.6140 18 1 10.6525 2.2356 1.6472 19 6 10.8916 1.2734 -0.2431 20 7 10.5103 1.2316 -1.5011 21 14 12.1811 0.0751 0.3823 22 1 11.5137 -1.1529 0.8841 23 1 13.1046 -0.2806 -0.7249 24 1 12.9501 0.7064 1.4848 25 6 8.8592 4.0907 1.2563 26 6 4.5902 4.5845 -0.5995 27 7 3.8778 3.5385 -0.9313 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6886 1.8464 -0.8900 32 1 1.6885 1.8465 0.8900 33 1 3.8574 0.6437 0.8892 34 1 3.8567 0.6439 -0.8908 35 1 5.4302 2.4510 1.7358 36 1 7.5533 6.5315 -0.7781 37 1 9.2140 6.5489 -0.1308 38 1 7.9731 4.4032 -1.9144 39 1 9.2460 5.5605 -2.3733 40 1 10.2326 3.3621 -1.8230 41 1 10.7392 4.5878 -0.6361 42 1 10.8984 0.5784 -2.1041 43 1 9.7307 4.5809 1.6901 44 1 8.3476 3.5063 2.0210 45 1 4.6101 5.5290 -1.1229 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594800314.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:50 Heat of formation + Delta-G solvation = -43.968064 kcal Electronic energy + Delta-G solvation = -28865.786389 eV Core-core repulsion = 24819.266825 eV Total energy + Delta-G solvation = -4046.519565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.32629 -38.33651 -37.67020 -36.87052 -35.46735 -34.09053 -33.31367 -31.07359 -30.59230 -30.07946 -29.37454 -26.64530 -25.12659 -23.84218 -23.56579 -21.94351 -21.66427 -20.96522 -19.45197 -18.40590 -17.91391 -17.13513 -16.79484 -16.56226 -16.16160 -15.74254 -15.49311 -15.32612 -14.80658 -14.65587 -14.27202 -13.91352 -13.70167 -13.47334 -13.18938 -13.03778 -12.77609 -12.67479 -12.47091 -12.15726 -12.12082 -11.80229 -11.73162 -11.66905 -11.46942 -11.26653 -11.01416 -10.84753 -10.73613 -10.59819 -10.24635 -10.13723 -9.95235 -9.82661 -9.65228 -9.47958 -9.13697 -8.86033 -8.46200 -8.14044 -6.04710 -4.12352 0.83776 1.56574 2.12271 2.33766 3.26603 3.34198 3.37063 3.40370 3.49414 4.16108 4.28001 4.38819 4.48593 4.51737 4.73894 4.85822 4.92878 4.94838 4.96423 5.18693 5.23852 5.27031 5.30283 5.33131 5.49935 5.57081 5.72806 5.84703 6.04928 6.28452 6.34479 6.36167 6.49149 6.58155 6.62049 6.66962 6.72998 6.90113 7.04592 7.22283 7.38516 7.43981 7.68074 7.90829 8.07262 8.36936 8.91790 9.53019 11.00163 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009034 B = 0.003994 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.642545 B = 7008.632392 C = 9024.598926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.389 6.389 3 C 0.052 3.948 4 C 0.129 3.871 5 N -0.361 5.361 6 C 0.190 3.810 7 C -0.810 4.810 8 S 2.721 3.279 9 O -0.970 6.970 10 O -0.968 6.968 11 N -0.991 5.991 12 C 0.127 3.873 13 C -0.134 4.134 14 C -0.110 4.110 15 C 0.041 3.959 16 H 0.028 0.972 17 C -0.516 4.516 18 H 0.058 0.942 19 C 0.064 3.936 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.126 3.874 26 C 0.136 3.864 27 N -0.296 5.296 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.111 0.889 34 H 0.102 0.898 35 H 0.193 0.807 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.036 0.964 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 2.617 1.485 15.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.307 6.307 3 C -0.025 4.025 4 C 0.007 3.993 5 N -0.140 5.140 6 C 0.037 3.963 7 C -0.908 4.908 8 S 2.810 3.190 9 O -0.961 6.961 10 O -0.958 6.958 11 N -0.831 5.831 12 C 0.002 3.998 13 C -0.173 4.173 14 C -0.148 4.148 15 C 0.021 3.979 16 H 0.046 0.954 17 C -0.555 4.555 18 H 0.076 0.924 19 C -0.138 4.138 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.208 1.208 23 H -0.213 1.213 24 H -0.198 1.198 25 C 0.002 3.998 26 C -0.054 4.054 27 N -0.115 5.115 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.210 0.790 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.093 0.907 45 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -16.145 2.234 1.134 16.338 hybrid contribution 0.930 -0.816 0.175 1.250 sum -15.215 1.418 1.310 15.337 Atomic orbital electron populations 1.22776 0.80038 1.03097 1.00306 1.87800 1.20494 1.26848 1.95586 1.22646 0.92533 0.85357 1.02011 1.21560 0.92579 0.78890 1.06247 1.48917 1.32795 1.11956 1.20295 1.22510 0.88141 0.92661 0.92946 1.31856 1.28777 1.12500 1.17654 1.00946 0.71920 0.73072 0.73102 1.93514 1.82909 1.34422 1.85206 1.93536 1.86522 1.82359 1.33394 1.57636 1.30592 1.49314 1.45524 1.21392 0.99836 0.92569 0.86047 1.21996 1.00713 0.98211 0.96393 1.21565 0.95316 0.96319 1.01565 1.19037 0.96165 0.91857 0.90823 0.95406 1.21131 1.22527 1.15583 0.96290 0.92376 1.24936 0.96706 0.97270 0.94855 1.69882 1.43232 1.35572 1.03967 0.86618 0.81601 0.81413 0.78492 1.20767 1.21323 1.19825 1.21898 0.91796 0.88489 0.97592 1.23473 0.91623 0.97608 0.92658 1.77342 1.24816 0.96532 1.12776 0.93852 0.93746 0.89159 0.91497 0.92594 0.87036 0.87956 0.78999 0.90577 0.91552 0.92594 0.92696 0.88911 0.94564 0.93030 0.91866 0.90707 0.78744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.88 10.70 -35.23 -0.38 -4.25 16 3 C 0.05 0.51 6.13 37.16 0.23 0.74 16 4 C 0.13 1.35 6.88 -4.04 -0.03 1.32 16 5 N -0.36 -4.85 3.68 -61.36 -0.23 -5.07 16 6 C 0.19 2.65 11.19 -17.22 -0.19 2.46 16 7 C -0.81 -12.23 6.17 -40.01 -0.25 -12.48 16 8 S 2.72 44.64 5.84 -107.50 -0.63 44.01 16 9 O -0.97 -16.96 16.59 -57.17 -0.95 -17.91 16 10 O -0.97 -17.71 16.55 -57.17 -0.95 -18.65 16 11 N -0.99 -17.06 3.28 -113.27 -0.37 -17.43 16 12 C 0.13 2.02 6.38 -3.71 -0.02 2.00 16 13 C -0.13 -2.37 6.08 -26.61 -0.16 -2.53 16 14 C -0.11 -2.39 4.96 -26.69 -0.13 -2.52 16 15 C 0.04 0.94 2.26 -91.43 -0.21 0.73 16 16 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 17 C -0.52 -13.22 8.57 -34.44 -0.30 -13.51 16 18 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 20 N -0.89 -24.14 11.31 55.43 0.63 -23.51 16 21 Si 0.89 20.41 29.54 -169.99 -5.02 15.38 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 25 C 0.13 2.46 5.63 -3.49 -0.02 2.44 16 26 C 0.14 1.96 11.81 -17.37 -0.21 1.75 16 27 N -0.30 -4.38 12.42 30.62 0.38 -4.00 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.11 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.19 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.08 1.06 7.13 -51.93 -0.37 0.69 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.09 2.31 6.04 -51.93 -0.31 2.00 16 41 H 0.04 0.78 8.14 -51.92 -0.42 0.36 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.07 1.41 7.12 -51.93 -0.37 1.04 16 45 H 0.20 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -32.19 381.83 -8.95 -41.15 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -6.93 Total: 1.20 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.27 Total: -16.68 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.41 Total: -50.01 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.27 Total: -40.81 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 44.64 SS G_CDS: -0.63 Total: 44.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.19 -8.95 -41.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594800314.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.820 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds