Wall clock time and date at job start Wed Apr 1 2020 02:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00022 * 2 1 4 4 C 1.53003 * 109.47002 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47363 * 64.99359 * 4 3 2 6 6 C 1.36931 * 120.00524 * 274.84361 * 5 4 3 7 7 H 1.08002 * 120.00320 * 147.01956 * 6 5 4 8 8 C 1.38813 * 120.00039 * 327.02620 * 6 5 4 9 9 N 1.31624 * 119.99496 * 335.85313 * 8 6 5 10 10 Si 1.86791 * 120.00252 * 155.85176 * 8 6 5 11 11 H 1.48504 * 109.47177 * 90.00030 * 10 8 6 12 12 H 1.48504 * 109.47174 * 209.99925 * 10 8 6 13 13 H 1.48501 * 109.47264 * 329.99919 * 10 8 6 14 14 S 1.65609 * 119.99414 * 94.84106 * 5 4 3 15 15 O 1.42095 * 106.40199 * 336.46192 * 14 5 4 16 16 O 1.42099 * 106.39832 * 203.54186 * 14 5 4 17 17 C 1.76198 * 107.21804 * 90.00555 * 14 5 4 18 18 C 1.39870 * 126.03731 * 269.99673 * 17 14 5 19 19 N 1.30831 * 108.20438 * 179.97438 * 18 17 14 20 20 N 1.40086 * 108.20298 * 0.02562 * 19 18 17 21 21 C 1.46508 * 126.03536 * 180.26312 * 20 19 18 22 22 C 1.54265 * 110.03182 * 211.85285 * 21 20 19 23 23 C 1.54885 * 104.19883 * 217.10712 * 22 21 20 24 24 C 1.54890 * 102.74856 * 37.94032 * 23 22 21 25 25 C 1.53877 * 110.03012 * 94.68652 * 21 20 19 26 26 C 1.34948 * 107.92789 * 359.97438 * 20 19 18 27 27 H 1.09004 * 109.47020 * 59.99973 * 1 2 3 28 28 H 1.09000 * 109.47764 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46977 * 300.00293 * 1 2 3 30 30 H 1.08996 * 109.47367 * 59.99942 * 3 2 1 31 31 H 1.08996 * 109.47157 * 299.99323 * 3 2 1 32 32 H 1.09001 * 109.46801 * 305.00031 * 4 3 2 33 33 H 1.08996 * 109.47376 * 184.99845 * 4 3 2 34 34 H 0.97004 * 119.99457 * 179.97438 * 9 8 6 35 35 H 1.08004 * 125.90075 * 359.97438 * 18 17 14 36 36 H 1.08998 * 110.01697 * 333.29828 * 21 20 19 37 37 H 1.09002 * 110.48629 * 335.78703 * 22 21 20 38 38 H 1.09007 * 110.48234 * 98.42522 * 22 21 20 39 39 H 1.09004 * 110.75297 * 279.63064 * 23 22 21 40 40 H 1.08994 * 110.75681 * 156.25879 * 23 22 21 41 41 H 1.08997 * 110.48796 * 203.38178 * 24 23 22 42 42 H 1.09000 * 110.59572 * 80.79258 * 24 23 22 43 43 H 1.08996 * 110.02808 * 238.56678 * 25 21 20 44 44 H 1.08997 * 110.03702 * 0.02562 * 25 21 20 45 45 H 1.07991 * 126.12567 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5642 -1.2527 6 6 4.0018 -0.7999 -1.3688 7 1 3.7963 -1.2649 -2.3217 8 6 4.2924 -1.5853 -0.2617 9 7 4.9865 -1.0830 0.7375 10 14 3.6983 -3.3548 -0.1899 11 1 4.7272 -4.2468 -0.7823 12 1 3.4635 -3.7411 1.2247 13 1 2.4320 -3.4832 -0.9548 14 16 4.4416 1.5129 -2.5276 15 8 3.8113 2.7727 -2.3418 16 8 4.2724 0.7241 -3.6974 17 6 6.1733 1.7938 -2.3632 18 6 6.7733 2.8520 -1.6729 19 7 8.0713 2.7219 -1.7736 20 7 8.3386 1.5753 -2.5327 21 6 9.6660 1.0617 -2.8800 22 6 9.6200 0.3660 -4.2561 23 6 10.5781 -0.8414 -4.1036 24 6 10.3038 -1.3144 -2.6544 25 6 10.1008 -0.0067 -1.8615 26 6 7.1575 1.0238 -2.8822 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6886 1.8464 0.8899 31 1 1.6887 1.8463 -0.8900 32 1 3.8514 0.5681 0.8409 33 1 3.9786 2.1764 0.0889 34 1 5.1893 -1.6317 1.5113 35 1 6.2548 3.6405 -1.1476 36 1 10.3889 1.8773 -2.8971 37 1 8.6087 0.0249 -4.4775 38 1 9.9758 1.0393 -5.0360 39 1 11.6158 -0.5279 -4.2177 40 1 10.3292 -1.6248 -4.8193 41 1 11.1587 -1.8676 -2.2654 42 1 9.4038 -1.9280 -2.6152 43 1 11.0351 0.2900 -1.3851 44 1 9.3241 -0.1435 -1.1092 45 1 7.0222 0.1288 -3.4711 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601959796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:35 Heat of formation + Delta-G solvation = -57.631650 kcal Electronic energy + Delta-G solvation = -29627.948061 eV Core-core repulsion = 25580.835999 eV Total energy + Delta-G solvation = -4047.112062 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.28785 -38.91390 -38.87539 -37.61097 -36.98180 -36.24856 -33.43060 -33.20012 -31.31840 -30.40027 -29.79804 -28.45888 -27.20185 -25.99679 -23.57346 -23.22722 -22.65986 -21.51014 -20.68283 -20.12300 -19.22437 -18.50726 -18.12023 -17.00530 -16.99520 -16.85328 -16.63635 -16.13366 -16.08150 -15.65882 -15.58885 -15.48488 -15.04131 -14.91019 -14.50197 -13.86748 -13.71580 -13.53787 -13.41653 -13.06063 -12.94248 -12.80561 -12.68810 -12.59476 -12.55332 -12.51570 -12.29772 -12.18157 -12.15440 -12.08506 -11.87575 -11.79632 -11.65285 -11.55665 -11.38947 -10.92779 -10.46358 -10.32604 -9.98643 -9.53815 -8.24021 -5.82378 0.12558 0.72294 1.41832 1.48531 1.51552 1.56901 1.70573 2.40810 2.85882 3.07312 3.21695 3.24722 3.42807 3.47512 3.63876 3.78331 3.82855 4.06876 4.20142 4.30302 4.35168 4.39007 4.41822 4.46329 4.60076 4.62779 4.67675 4.68474 4.70841 4.76764 4.80957 4.83816 4.93984 4.94204 5.03427 5.12492 5.18234 5.36296 5.41400 5.47252 5.48631 5.84151 5.99823 6.50605 6.54018 6.61087 7.03185 7.46718 8.72177 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012641 B = 0.004618 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2214.473504 B = 6062.415248 C = 7311.349123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.390 6.390 3 C 0.056 3.944 4 C 0.118 3.882 5 N -0.806 5.806 6 C -0.250 4.250 7 H 0.091 0.909 8 C 0.024 3.976 9 N -0.850 5.850 10 Si 0.969 3.031 11 H -0.272 1.272 12 H -0.278 1.278 13 H -0.267 1.267 14 S 2.583 3.417 15 O -1.023 7.023 16 O -1.019 7.019 17 C -0.809 4.809 18 C 0.111 3.889 19 N -0.320 5.320 20 N -0.356 5.356 21 C 0.140 3.860 22 C -0.140 4.140 23 C -0.108 4.108 24 C -0.124 4.124 25 C -0.135 4.135 26 C 0.163 3.837 27 H 0.037 0.963 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.274 0.726 35 H 0.200 0.800 36 H 0.116 0.884 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.095 0.905 44 H 0.042 0.958 45 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 -1.059 -2.140 7.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C -0.023 4.023 4 C -0.009 4.009 5 N -0.630 5.630 6 C -0.397 4.397 7 H 0.108 0.892 8 C -0.186 4.186 9 N -0.490 5.490 10 Si 0.793 3.207 11 H -0.198 1.198 12 H -0.203 1.203 13 H -0.191 1.191 14 S 2.686 3.314 15 O -1.013 7.013 16 O -1.010 7.010 17 C -0.903 4.903 18 C -0.077 4.077 19 N -0.140 5.140 20 N -0.135 5.135 21 C 0.040 3.960 22 C -0.178 4.178 23 C -0.146 4.146 24 C -0.162 4.162 25 C -0.173 4.173 26 C 0.011 3.989 27 H 0.056 0.944 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.217 0.783 36 H 0.134 0.866 37 H 0.087 0.913 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.061 0.939 45 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 8.449 -0.206 -2.487 8.810 hybrid contribution -0.743 -0.565 0.338 0.993 sum 7.706 -0.770 -2.149 8.037 Atomic orbital electron populations 1.22884 0.81358 1.03038 1.00194 1.88095 1.19722 1.27778 1.95269 1.22987 0.94791 0.84724 0.99814 1.21489 0.91732 0.97722 0.89949 1.53453 1.66984 1.13748 1.28814 1.19504 1.41460 0.80211 0.98481 0.89171 1.26047 0.93891 1.02599 0.96113 1.70014 1.31829 1.38676 1.08443 0.85301 0.79295 0.78287 0.77785 1.19813 1.20276 1.19126 1.08825 0.73941 0.72449 0.76230 1.93281 1.75901 1.44997 1.87105 1.93278 1.86792 1.70379 1.50513 1.32559 1.28718 1.08401 1.20663 1.23610 0.90743 0.97144 0.96233 1.77123 1.16885 1.03981 1.16012 1.49565 1.06521 1.18775 1.38633 1.22531 0.79324 0.97632 0.96510 1.22932 1.01948 0.98855 0.94109 1.22458 0.99732 0.96200 0.96192 1.22397 1.02391 0.95727 0.95680 1.22610 1.01997 0.95304 0.97416 1.22327 0.84542 0.97094 0.94961 0.94391 0.89295 0.92933 0.91017 0.94720 0.87832 0.90559 0.91623 0.78336 0.86643 0.91343 0.88623 0.88693 0.89435 0.89083 0.92571 0.88641 0.93878 0.79389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.91 16 2 O -0.39 -16.03 9.95 -148.98 -1.48 -17.51 16 3 C 0.06 2.20 6.28 71.98 0.45 2.65 16 4 C 0.12 5.24 5.41 86.38 0.47 5.70 16 5 N -0.81 -39.16 2.85 -343.45 -0.98 -40.14 16 6 C -0.25 -12.65 8.43 84.03 0.71 -11.94 16 7 H 0.09 4.71 7.40 -2.91 -0.02 4.69 16 8 C 0.02 1.16 4.97 84.86 0.42 1.58 16 9 N -0.85 -41.80 11.27 21.65 0.24 -41.56 16 10 Si 0.97 39.45 29.62 68.60 2.03 41.48 16 11 H -0.27 -10.68 7.11 99.48 0.71 -9.98 16 12 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 13 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 14 S 2.58 124.98 5.75 -56.49 -0.32 124.66 16 15 O -1.02 -50.99 16.84 -128.00 -2.16 -53.14 16 16 O -1.02 -53.83 16.73 -128.00 -2.14 -55.98 16 17 C -0.81 -35.62 6.17 21.99 0.14 -35.49 16 18 C 0.11 4.54 11.81 85.24 1.01 5.55 16 19 N -0.32 -12.62 12.58 -57.02 -0.72 -13.34 16 20 N -0.36 -12.64 3.45 -324.05 -1.12 -13.76 16 21 C 0.14 3.59 4.01 45.71 0.18 3.77 16 22 C -0.14 -2.85 6.37 31.67 0.20 -2.65 16 23 C -0.11 -1.64 6.91 31.88 0.22 -1.42 16 24 C -0.12 -2.38 6.83 31.67 0.22 -2.17 16 25 C -0.13 -3.24 6.60 31.32 0.21 -3.03 16 26 C 0.16 6.48 10.18 83.54 0.85 7.33 16 27 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 4.91 5.29 -2.39 -0.01 4.90 16 33 H 0.08 3.14 7.61 -2.39 -0.02 3.12 16 34 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 35 H 0.20 7.20 8.06 -2.91 -0.02 7.18 16 36 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.07 1.62 5.93 -2.39 -0.01 1.61 16 38 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.37 7.92 -2.39 -0.02 1.35 16 45 H 0.19 6.90 6.87 -2.92 -0.02 6.88 16 Total: -1.00 -67.60 380.41 0.67 -66.93 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.99 Total: 30.55 kcal Atomic # 6 Polarization: -34.51 SS G_CDS: 6.32 Total: -28.19 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -2.57 Total: -108.79 kcal Atomic # 8 Polarization: -120.85 SS G_CDS: -5.78 Total: -126.63 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Atomic # 16 Polarization: 124.98 SS G_CDS: -0.32 Total: 124.66 kcal Total: -67.60 0.67 -66.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601959796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.296 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds