Wall clock time and date at job start Wed Apr 1 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00019 * 2 1 4 4 C 1.34780 * 120.00174 * 180.02562 * 2 1 3 5 5 O 1.21585 * 119.99620 * 359.97438 * 4 2 1 6 6 N 1.34776 * 120.00120 * 179.97438 * 4 2 1 7 7 C 1.39968 * 120.00195 * 184.58690 * 6 4 2 8 8 C 1.38979 * 120.00360 * 144.88388 * 7 6 4 9 9 C 1.38218 * 120.23006 * 180.02562 * 8 7 6 10 10 C 1.38016 * 120.22077 * 359.97438 * 9 8 7 11 11 C 1.39585 * 119.99415 * 0.04097 * 10 9 8 12 12 C 1.47840 * 120.10975 * 179.97438 * 11 10 9 13 13 O 1.21575 * 119.99493 * 179.97438 * 12 11 10 14 14 N 1.34778 * 120.00073 * 359.96427 * 12 11 10 15 15 C 1.40519 * 119.99537 * 179.97438 * 14 12 11 16 16 C 1.40663 * 126.08920 * 359.68381 * 15 14 12 17 17 N 1.30909 * 108.38932 * 179.85082 * 16 15 14 18 18 N 1.40068 * 108.40986 * 0.41282 * 17 16 15 19 19 C 1.37317 * 126.06942 * 179.71848 * 18 17 16 20 20 H 1.08000 * 120.00271 * 180.02562 * 19 18 17 21 21 C 1.38993 * 119.99661 * 0.02562 * 19 18 17 22 22 N 1.31289 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99625 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47276 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47063 * 120.00362 * 23 21 19 26 26 H 1.48501 * 109.46960 * 239.99921 * 23 21 19 27 27 C 1.35701 * 126.08254 * 179.97438 * 15 14 12 28 28 C 1.38591 * 119.99853 * 324.90706 * 7 6 4 29 29 H 1.08999 * 109.47171 * 269.99668 * 1 2 3 30 30 H 1.08997 * 109.47288 * 29.99350 * 1 2 3 31 31 H 1.09001 * 109.47076 * 149.99283 * 1 2 3 32 32 H 1.08997 * 109.47321 * 270.00566 * 3 2 1 33 33 H 1.09005 * 109.46909 * 30.00800 * 3 2 1 34 34 H 1.09004 * 109.46992 * 150.00024 * 3 2 1 35 35 H 0.97000 * 119.99639 * 4.58314 * 6 4 2 36 36 H 1.08003 * 119.88898 * 359.97438 * 8 7 6 37 37 H 1.08005 * 119.88762 * 180.02562 * 9 8 7 38 38 H 1.08004 * 119.99899 * 180.02562 * 10 9 8 39 39 H 0.96994 * 119.99983 * 359.97438 * 14 12 11 40 40 H 1.07999 * 125.80820 * 0.03158 * 16 15 14 41 41 H 0.96993 * 120.00062 * 179.97438 * 22 21 19 42 42 H 1.08001 * 126.24903 * 359.94182 * 27 15 14 43 43 H 1.08008 * 120.10878 * 359.70087 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5309 -2.2201 -0.0005 6 7 3.4867 -1.1672 -0.0010 7 6 4.1865 -2.3754 -0.0985 8 6 5.3863 -2.4291 -0.7979 9 6 6.0810 -3.6199 -0.8975 10 6 5.5881 -4.7636 -0.3027 11 6 4.3838 -4.7203 0.4017 12 6 3.8532 -5.9440 1.0393 13 8 2.8043 -5.9038 1.6527 14 7 4.5321 -7.1041 0.9405 15 6 4.0279 -8.2670 1.5471 16 6 2.8372 -8.3647 2.2895 17 7 2.7009 -9.6034 2.6905 18 7 3.7992 -10.3407 2.2301 19 6 4.0245 -11.6775 2.4486 20 1 4.9088 -12.1491 2.0461 21 6 3.1142 -12.4238 3.1878 22 7 2.0394 -11.8505 3.6775 23 14 3.4209 -14.2422 3.4857 24 1 4.6933 -14.6430 2.8333 25 1 3.5113 -14.4963 4.9460 26 1 2.3016 -15.0332 2.9141 27 6 4.6060 -9.4946 1.5255 28 6 3.6828 -3.5184 0.5020 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 2.3791 1.5835 -1.0276 33 1 1.6084 2.0284 0.5140 34 1 3.1499 1.1384 0.5139 35 1 3.9716 -0.3298 0.0661 36 1 5.7769 -1.5375 -1.2658 37 1 7.0131 -3.6552 -1.4420 38 1 6.1341 -5.6920 -0.3825 39 1 5.3687 -7.1362 0.4507 40 1 2.1505 -7.5560 2.4917 41 1 1.4040 -12.3714 4.1930 42 1 5.5346 -9.7547 1.0393 43 1 2.7527 -3.4777 1.0497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739708138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:10 Heat of formation + Delta-G solvation = 74.019451 kcal Electronic energy + Delta-G solvation = -28339.441820 eV Core-core repulsion = 24194.887378 eV Total energy + Delta-G solvation = -4144.554442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.02374 -39.95984 -39.11147 -37.88435 -35.90178 -35.01649 -34.16322 -33.10010 -31.17246 -30.19377 -29.92878 -28.31611 -27.63739 -26.22173 -25.03997 -23.66520 -22.72917 -21.00447 -20.45850 -20.30905 -19.31767 -18.63027 -17.90160 -17.25943 -16.62656 -16.35369 -15.86425 -15.46930 -15.41547 -15.20617 -14.58110 -14.53948 -14.28709 -14.08603 -13.83069 -13.58890 -13.34354 -13.16788 -13.07795 -12.98953 -12.82928 -12.57907 -12.36337 -11.93593 -11.66116 -11.61569 -11.34012 -11.23946 -10.87788 -10.62230 -10.47161 -10.16661 -10.09227 -9.14762 -9.12503 -9.11220 -8.96007 -8.73805 -8.28276 -7.98634 -6.61689 -6.50290 -4.16493 0.86833 1.28758 2.20027 2.77196 2.96856 3.08538 3.14642 3.16026 3.40184 3.66049 3.67782 3.93163 4.03921 4.48803 4.55996 4.69230 4.75234 4.79032 4.88057 4.91819 5.05568 5.07722 5.09491 5.21043 5.25614 5.36628 5.44601 5.54507 5.78076 5.93487 6.11266 6.20367 6.28178 6.31105 6.43723 6.49414 6.56227 6.89616 6.97761 7.04308 7.21141 7.31336 7.45310 7.92315 8.20433 8.26818 8.35264 8.70376 8.94809 9.44449 9.73951 10.45838 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002054 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424812 B =13627.632010 C =14799.698810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.636 5.636 3 C 0.078 3.922 4 C 0.699 3.301 5 O -0.557 6.557 6 N -0.685 5.685 7 C 0.150 3.850 8 C -0.131 4.131 9 C -0.107 4.107 10 C -0.107 4.107 11 C -0.098 4.098 12 C 0.538 3.462 13 O -0.526 6.526 14 N -0.617 5.617 15 C -0.058 4.058 16 C -0.031 4.031 17 N -0.260 5.260 18 N -0.143 5.143 19 C -0.322 4.322 20 H 0.117 0.883 21 C 0.045 3.955 22 N -0.770 5.770 23 Si 0.935 3.065 24 H -0.263 1.263 25 H -0.274 1.274 26 H -0.274 1.274 27 C -0.083 4.083 28 C -0.063 4.063 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.405 0.595 36 H 0.126 0.874 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.396 0.604 40 H 0.177 0.823 41 H 0.274 0.726 42 H 0.146 0.854 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.123 25.449 -9.803 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.374 5.374 3 C -0.066 4.066 4 C 0.401 3.599 5 O -0.432 6.432 6 N -0.335 5.335 7 C 0.056 3.944 8 C -0.152 4.152 9 C -0.126 4.126 10 C -0.127 4.127 11 C -0.102 4.102 12 C 0.325 3.675 13 O -0.404 6.404 14 N -0.260 5.260 15 C -0.164 4.164 16 C -0.207 4.207 17 N -0.091 5.091 18 N 0.089 4.911 19 C -0.455 4.455 20 H 0.134 0.866 21 C -0.172 4.172 22 N -0.396 5.396 23 Si 0.759 3.241 24 H -0.187 1.187 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.234 4.234 28 C -0.084 4.084 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.243 0.757 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.230 0.770 40 H 0.194 0.806 41 H 0.085 0.915 42 H 0.163 0.837 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 4.896 23.869 -8.575 25.831 hybrid contribution 1.476 0.406 -0.664 1.668 sum 6.372 24.275 -9.239 26.744 Atomic orbital electron populations 1.21578 0.77128 1.03316 1.02114 1.46915 1.07394 1.04543 1.78556 1.21769 0.97012 0.85861 1.01920 1.15899 0.81480 0.84292 0.78222 1.91038 1.67172 1.29356 1.55608 1.42646 1.05057 1.08426 1.77344 1.17359 0.93007 0.85692 0.98356 1.20949 0.95619 0.99013 0.99593 1.20812 0.99981 0.91790 1.00004 1.21339 0.95124 0.98885 0.97320 1.19954 0.95678 0.94205 1.00367 1.18010 0.84849 0.82719 0.81929 1.90685 1.22675 1.84814 1.42181 1.42395 1.24264 1.07114 1.52200 1.17263 1.00668 0.85838 1.12600 1.24153 0.97904 0.96342 1.02302 1.78256 1.06458 1.01682 1.22697 1.44556 1.11862 1.06611 1.28090 1.19907 1.09603 0.80553 1.35405 0.86591 1.25650 0.94883 1.01065 0.95594 1.70229 1.07748 1.36231 1.25413 0.85766 0.79070 0.80612 0.78691 1.18710 1.19953 1.19952 1.21246 1.01123 0.90197 1.10880 1.21433 1.00410 0.90055 0.96542 0.92610 0.91153 0.90082 0.92348 0.90369 0.91592 0.75747 0.85642 0.85101 0.85418 0.77014 0.80642 0.91542 0.83673 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.76 10.44 59.84 0.62 1.38 16 2 N -0.64 -5.35 3.27 -195.34 -0.64 -5.99 16 3 C 0.08 0.30 10.24 59.85 0.61 0.91 16 4 C 0.70 8.57 8.12 -86.92 -0.71 7.87 16 5 O -0.56 -9.63 13.36 5.29 0.07 -9.56 16 6 N -0.69 -6.68 5.21 -14.26 -0.07 -6.75 16 7 C 0.15 1.81 6.29 -83.74 -0.53 1.28 16 8 C -0.13 -1.20 9.96 -39.31 -0.39 -1.59 16 9 C -0.11 -0.99 10.02 -39.67 -0.40 -1.39 16 10 C -0.11 -1.26 9.54 -39.16 -0.37 -1.63 16 11 C -0.10 -1.55 5.87 -105.00 -0.62 -2.17 16 12 C 0.54 10.82 7.74 -12.33 -0.10 10.72 16 13 O -0.53 -12.77 13.49 5.30 0.07 -12.69 16 14 N -0.62 -11.95 5.41 -10.85 -0.06 -12.01 16 15 C -0.06 -1.41 6.90 -83.86 -0.58 -1.99 16 16 C -0.03 -0.87 10.85 -17.03 -0.18 -1.06 16 17 N -0.26 -7.86 10.40 30.80 0.32 -7.54 16 18 N -0.14 -4.06 3.74 -11.40 -0.04 -4.11 16 19 C -0.32 -8.74 10.25 -14.81 -0.15 -8.90 16 20 H 0.12 2.81 7.83 -52.49 -0.41 2.40 16 21 C 0.05 1.19 5.50 -17.50 -0.10 1.10 16 22 N -0.77 -22.09 11.81 55.50 0.66 -21.44 16 23 Si 0.93 19.38 29.55 -169.99 -5.02 14.35 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 27 C -0.08 -2.03 11.49 -16.38 -0.19 -2.22 16 28 C -0.06 -1.01 8.23 -38.98 -0.32 -1.33 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.08 0.78 7.42 -51.93 -0.39 0.39 16 32 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.08 0.18 8.07 -51.93 -0.42 -0.24 16 34 H 0.07 0.17 6.30 -51.93 -0.33 -0.16 16 35 H 0.41 2.32 6.52 -40.82 -0.27 2.06 16 36 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.13 1.22 6.40 -52.48 -0.34 0.88 16 39 H 0.40 5.90 6.85 -40.82 -0.28 5.62 16 40 H 0.18 4.91 5.92 -52.49 -0.31 4.60 16 41 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 43 H 0.16 2.95 5.82 -52.48 -0.31 2.65 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -39.32 366.98 -7.29 -46.61 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -4.71 Total: 12.61 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: -3.39 Total: 0.98 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.16 Total: -57.83 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.14 Total: -22.25 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.32 -7.29 -46.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739708138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.627 kcal (2) G-P(sol) polarization free energy of solvation -39.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds