Wall clock time and date at job start Wed Apr 1 2020 02:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00019 * 2 1 4 4 C 1.34780 * 120.00174 * 180.02562 * 2 1 3 5 5 O 1.21585 * 119.99620 * 359.97438 * 4 2 1 6 6 N 1.34776 * 120.00120 * 179.97438 * 4 2 1 7 7 C 1.39968 * 120.00195 * 184.58690 * 6 4 2 8 8 C 1.38979 * 120.00360 * 144.88388 * 7 6 4 9 9 C 1.38218 * 120.23006 * 180.02562 * 8 7 6 10 10 C 1.38016 * 120.22077 * 359.97438 * 9 8 7 11 11 C 1.39585 * 119.99415 * 0.04097 * 10 9 8 12 12 C 1.47840 * 120.10975 * 179.97438 * 11 10 9 13 13 O 1.21575 * 119.99493 * 179.97438 * 12 11 10 14 14 N 1.34778 * 120.00073 * 359.96427 * 12 11 10 15 15 C 1.40519 * 119.99537 * 179.97438 * 14 12 11 16 16 C 1.40663 * 126.08920 * 359.68381 * 15 14 12 17 17 N 1.30909 * 108.38932 * 179.85082 * 16 15 14 18 18 N 1.40068 * 108.40986 * 0.41282 * 17 16 15 19 19 C 1.37317 * 126.06942 * 179.71848 * 18 17 16 20 20 H 1.08000 * 120.00271 * 180.02562 * 19 18 17 21 21 C 1.38993 * 119.99661 * 0.02562 * 19 18 17 22 22 N 1.31289 * 120.00134 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99625 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47276 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47063 * 120.00362 * 23 21 19 26 26 H 1.48501 * 109.46960 * 239.99921 * 23 21 19 27 27 C 1.35701 * 126.08254 * 179.97438 * 15 14 12 28 28 C 1.38591 * 119.99853 * 324.90706 * 7 6 4 29 29 H 1.08999 * 109.47171 * 269.99668 * 1 2 3 30 30 H 1.08997 * 109.47288 * 29.99350 * 1 2 3 31 31 H 1.09001 * 109.47076 * 149.99283 * 1 2 3 32 32 H 1.08997 * 109.47321 * 270.00566 * 3 2 1 33 33 H 1.09005 * 109.46909 * 30.00800 * 3 2 1 34 34 H 1.09004 * 109.46992 * 150.00024 * 3 2 1 35 35 H 0.97000 * 119.99639 * 4.58314 * 6 4 2 36 36 H 1.08003 * 119.88898 * 359.97438 * 8 7 6 37 37 H 1.08005 * 119.88762 * 180.02562 * 9 8 7 38 38 H 1.08004 * 119.99899 * 180.02562 * 10 9 8 39 39 H 0.96994 * 119.99983 * 359.97438 * 14 12 11 40 40 H 1.07999 * 125.80820 * 0.03158 * 16 15 14 41 41 H 0.96993 * 120.00062 * 179.97438 * 22 21 19 42 42 H 1.08001 * 126.24903 * 359.94182 * 27 15 14 43 43 H 1.08008 * 120.10878 * 359.70087 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5309 -2.2201 -0.0005 6 7 3.4867 -1.1672 -0.0010 7 6 4.1865 -2.3754 -0.0985 8 6 5.3863 -2.4291 -0.7979 9 6 6.0810 -3.6199 -0.8975 10 6 5.5881 -4.7636 -0.3027 11 6 4.3838 -4.7203 0.4017 12 6 3.8532 -5.9440 1.0393 13 8 2.8043 -5.9038 1.6527 14 7 4.5321 -7.1041 0.9405 15 6 4.0279 -8.2670 1.5471 16 6 2.8372 -8.3647 2.2895 17 7 2.7009 -9.6034 2.6905 18 7 3.7992 -10.3407 2.2301 19 6 4.0245 -11.6775 2.4486 20 1 4.9088 -12.1491 2.0461 21 6 3.1142 -12.4238 3.1878 22 7 2.0394 -11.8505 3.6775 23 14 3.4209 -14.2422 3.4857 24 1 4.6933 -14.6430 2.8333 25 1 3.5113 -14.4963 4.9460 26 1 2.3016 -15.0332 2.9141 27 6 4.6060 -9.4946 1.5255 28 6 3.6828 -3.5184 0.5020 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5139 32 1 2.3791 1.5835 -1.0276 33 1 1.6084 2.0284 0.5140 34 1 3.1499 1.1384 0.5139 35 1 3.9716 -0.3298 0.0661 36 1 5.7769 -1.5375 -1.2658 37 1 7.0131 -3.6552 -1.4420 38 1 6.1341 -5.6920 -0.3825 39 1 5.3687 -7.1362 0.4507 40 1 2.1505 -7.5560 2.4917 41 1 1.4040 -12.3714 4.1930 42 1 5.5346 -9.7547 1.0393 43 1 2.7527 -3.4777 1.0497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739708138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:01:09 Heat of formation + Delta-G solvation = 43.990270 kcal Electronic energy + Delta-G solvation = -28340.743983 eV Core-core repulsion = 24194.887378 eV Total energy + Delta-G solvation = -4145.856605 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00565 -41.67234 -40.58583 -39.18772 -36.69258 -36.08685 -35.89026 -34.98126 -32.44735 -32.00636 -30.93437 -29.53908 -28.76977 -27.02366 -26.82354 -25.02572 -23.61223 -22.90470 -21.95148 -21.32964 -21.06359 -19.70686 -19.23803 -18.73570 -17.66367 -17.39862 -17.19879 -16.96393 -16.83556 -16.29543 -16.17387 -15.73049 -15.55290 -15.16431 -15.03412 -14.97260 -14.75957 -14.71852 -14.34345 -13.65708 -13.50496 -13.47325 -13.44485 -13.34092 -12.97989 -12.94124 -12.89004 -12.71074 -12.59192 -12.01986 -11.92154 -11.59300 -11.17844 -11.05453 -10.88244 -10.78225 -10.12848 -9.95196 -9.84344 -9.14209 -8.54685 -8.47735 -6.25456 -0.16337 0.34584 1.25164 1.39571 1.46301 1.59660 1.61753 1.84610 1.98881 2.02947 2.25853 2.47218 2.81374 2.91048 2.95228 3.09087 3.75633 3.95683 4.13765 4.18521 4.23490 4.30128 4.40952 4.45911 4.47424 4.51967 4.59767 4.73943 4.84247 4.88634 4.94248 4.99511 5.04631 5.21015 5.26877 5.32100 5.39155 5.41524 5.44461 5.49844 5.77470 5.94566 5.98064 6.28417 6.69444 6.72411 6.74771 7.33905 7.36783 7.45884 7.65237 8.52135 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.021897 B = 0.002054 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.424812 B =13627.632010 C =14799.698810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.631 5.631 3 C 0.070 3.930 4 C 0.687 3.313 5 O -0.621 6.621 6 N -0.668 5.668 7 C 0.142 3.858 8 C -0.104 4.104 9 C -0.092 4.092 10 C -0.099 4.099 11 C -0.127 4.127 12 C 0.534 3.466 13 O -0.582 6.582 14 N -0.605 5.605 15 C -0.046 4.046 16 C -0.064 4.064 17 N -0.309 5.309 18 N -0.166 5.166 19 C -0.352 4.352 20 H 0.146 0.854 21 C -0.011 4.011 22 N -0.827 5.827 23 Si 1.023 2.977 24 H -0.237 1.237 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.076 4.076 28 C -0.094 4.094 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.050 0.950 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.427 0.573 36 H 0.175 0.825 37 H 0.181 0.819 38 H 0.153 0.847 39 H 0.420 0.580 40 H 0.159 0.841 41 H 0.276 0.724 42 H 0.195 0.805 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.815 27.199 -12.494 32.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.368 5.368 3 C -0.072 4.072 4 C 0.388 3.612 5 O -0.500 6.500 6 N -0.320 5.320 7 C 0.047 3.953 8 C -0.124 4.124 9 C -0.110 4.110 10 C -0.119 4.119 11 C -0.131 4.131 12 C 0.323 3.677 13 O -0.463 6.463 14 N -0.250 5.250 15 C -0.153 4.153 16 C -0.239 4.239 17 N -0.142 5.142 18 N 0.065 4.935 19 C -0.483 4.483 20 H 0.163 0.837 21 C -0.222 4.222 22 N -0.455 5.455 23 Si 0.841 3.159 24 H -0.159 1.159 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.226 4.226 28 C -0.115 4.115 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.099 0.901 35 H 0.268 0.732 36 H 0.192 0.808 37 H 0.198 0.802 38 H 0.170 0.830 39 H 0.259 0.741 40 H 0.176 0.824 41 H 0.086 0.914 42 H 0.212 0.788 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.671 25.737 -11.308 29.728 hybrid contribution 0.054 0.134 0.086 0.168 sum 9.725 25.871 -11.222 29.830 Atomic orbital electron populations 1.21664 0.77038 1.03636 1.02142 1.47078 1.07774 1.05014 1.76983 1.22116 0.97525 0.83826 1.03715 1.16289 0.82238 0.84519 0.78112 1.91014 1.68577 1.32052 1.58393 1.42431 1.04226 1.08754 1.76592 1.17510 0.94174 0.85132 0.98441 1.21503 0.93193 1.00962 0.96753 1.21389 1.01016 0.90287 0.98332 1.21637 0.93089 1.01279 0.95862 1.19618 0.98249 0.91839 1.03348 1.18900 0.83969 0.84027 0.80754 1.90658 1.25270 1.85783 1.44547 1.42254 1.25155 1.05504 1.52121 1.17357 0.99154 0.87643 1.11113 1.24104 0.99719 0.95754 1.04328 1.78156 1.08627 1.02748 1.24649 1.44889 1.12052 1.07511 1.29051 1.20732 1.10964 0.80490 1.36080 0.83718 1.26980 0.94004 1.06735 0.94477 1.70424 1.09380 1.38762 1.26886 0.84488 0.79844 0.73016 0.78515 1.15948 1.19796 1.19877 1.22006 1.01880 0.89283 1.09465 1.21194 0.99568 0.92320 0.98449 0.92813 0.87322 0.93148 0.90423 0.88393 0.90116 0.73167 0.80771 0.80178 0.82969 0.74088 0.82359 0.91411 0.78815 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.51 10.44 127.77 1.33 2.85 16 2 N -0.63 -10.32 3.27 -890.18 -2.91 -13.24 16 3 C 0.07 0.33 10.24 127.77 1.31 1.64 16 4 C 0.69 17.47 8.12 179.05 1.45 18.92 16 5 O -0.62 -23.77 13.36 -3.98 -0.05 -23.82 16 6 N -0.67 -12.25 5.21 -317.28 -1.65 -13.90 16 7 C 0.14 3.25 6.29 38.10 0.24 3.49 16 8 C -0.10 -1.39 9.96 22.44 0.22 -1.17 16 9 C -0.09 -1.19 10.02 22.21 0.22 -0.97 16 10 C -0.10 -2.03 9.54 22.54 0.21 -1.81 16 11 C -0.13 -4.10 5.87 -20.11 -0.12 -4.22 16 12 C 0.53 22.78 7.74 86.78 0.67 23.45 16 13 O -0.58 -31.25 13.49 -3.95 -0.05 -31.31 16 14 N -0.61 -23.70 5.41 -306.52 -1.66 -25.36 16 15 C -0.05 -2.33 6.90 37.75 0.26 -2.07 16 16 C -0.06 -3.85 10.85 85.42 0.93 -2.92 16 17 N -0.31 -19.89 10.40 -56.46 -0.59 -20.48 16 18 N -0.17 -9.64 3.74 -189.99 -0.71 -10.35 16 19 C -0.35 -19.14 10.25 84.02 0.86 -18.28 16 20 H 0.15 6.74 7.83 -2.91 -0.02 6.72 16 21 C -0.01 -0.57 5.50 84.95 0.47 -0.11 16 22 N -0.83 -49.68 11.81 21.66 0.26 -49.42 16 23 Si 1.02 39.70 29.55 68.60 2.03 41.73 16 24 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 25 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 26 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 27 C -0.08 -3.68 11.49 83.38 0.96 -2.72 16 28 C -0.09 -3.17 8.23 22.66 0.19 -2.98 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 31 H 0.05 1.09 7.42 -2.39 -0.02 1.08 16 32 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.10 0.13 8.07 -2.38 -0.02 0.11 16 34 H 0.08 0.14 6.30 -2.38 -0.02 0.13 16 35 H 0.43 3.59 6.52 -92.71 -0.60 2.99 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.15 2.25 6.40 -2.91 -0.02 2.24 16 39 H 0.42 11.76 6.85 -92.71 -0.64 11.13 16 40 H 0.16 9.87 5.92 -2.91 -0.02 9.86 16 41 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.19 7.20 8.06 -2.91 -0.02 7.18 16 43 H 0.11 4.62 5.82 -2.91 -0.02 4.60 16 Total: -1.00 -100.03 366.98 3.72 -96.31 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: -0.14 Total: 36.73 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: 9.21 Total: 13.10 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -7.27 Total: -132.74 kcal Atomic # 8 Polarization: -55.03 SS G_CDS: -0.11 Total: -55.13 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -100.03 3.72 -96.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739708138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.303 kcal (2) G-P(sol) polarization free energy of solvation -100.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds