Wall clock time and date at job start Wed Apr 1 2020 02:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34779 * 119.99804 * 2 1 4 4 O 1.21582 * 120.00170 * 0.02562 * 3 2 1 5 5 N 1.34776 * 119.99705 * 180.02562 * 3 2 1 6 6 N 1.40099 * 120.00073 * 0.02562 * 5 3 2 7 7 C 1.34783 * 120.00211 * 179.97438 * 6 5 3 8 8 O 1.21634 * 119.99867 * 0.02562 * 7 6 5 9 9 C 1.47177 * 120.00032 * 179.97438 * 7 6 5 10 10 C 1.41086 * 126.48138 * 359.97438 * 9 7 6 11 11 N 1.30455 * 108.30316 * 179.97438 * 10 9 7 12 12 N 1.39915 * 109.22088 * 359.97438 * 11 10 9 13 13 C 1.46491 * 125.81235 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.46957 * 90.02299 * 13 12 11 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99942 * 179.72213 * 14 13 12 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.35177 * 108.38043 * 0.26618 * 12 11 10 23 23 C 1.47742 * 126.47079 * 179.72007 * 22 12 11 24 24 C 1.39613 * 120.14898 * 314.72261 * 23 22 12 25 25 C 1.37949 * 119.84926 * 179.70047 * 24 23 22 26 26 C 1.38366 * 120.14637 * 0.57612 * 25 24 23 27 27 C 1.38358 * 120.30457 * 359.71895 * 26 25 24 28 28 C 1.37952 * 120.14755 * 359.97438 * 27 26 25 29 29 H 1.08993 * 109.47519 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47017 * 299.99783 * 1 2 3 31 31 H 1.08996 * 109.47165 * 59.99362 * 1 2 3 32 32 H 0.96993 * 119.99902 * 180.02562 * 2 1 3 33 33 H 0.96998 * 119.99877 * 180.02562 * 5 3 2 34 34 H 0.96998 * 120.00049 * 359.97438 * 6 5 3 35 35 H 1.07999 * 125.84588 * 0.02562 * 10 9 7 36 36 H 1.09004 * 109.47166 * 330.02565 * 13 12 11 37 37 H 1.08994 * 109.47507 * 210.02271 * 13 12 11 38 38 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 39 39 H 1.08000 * 120.07100 * 359.97438 * 24 23 22 40 40 H 1.07995 * 119.92371 * 180.29433 * 25 24 23 41 41 H 1.08005 * 119.84443 * 179.69546 * 26 25 24 42 42 H 1.07998 * 119.92938 * 179.97438 * 27 26 25 43 43 H 1.08004 * 120.07735 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2202 0.0005 5 7 3.4866 1.1672 -0.0005 6 7 4.1871 -0.0461 -0.0016 7 6 5.5349 -0.0461 -0.0027 8 8 6.1431 1.0072 -0.0022 9 6 6.2708 -1.3207 -0.0032 10 6 5.7077 -2.6144 -0.0023 11 7 6.6799 -3.4843 -0.0038 12 7 7.9041 -2.8069 -0.0063 13 6 9.2293 -3.4314 -0.0091 14 6 9.6809 -3.6450 -1.4309 15 1 9.0447 -3.3452 -2.2505 16 6 10.9092 -4.2176 -1.6854 17 7 11.6841 -4.5824 -0.6874 18 14 11.4722 -4.4753 -3.4477 19 1 10.4253 -3.9832 -4.3789 20 1 12.7326 -3.7248 -3.6795 21 1 11.7068 -5.9222 -3.6860 22 6 7.6561 -1.4781 -0.0004 23 6 8.6628 -0.3968 0.0053 24 6 9.7618 -0.4665 0.8635 25 6 10.7014 0.5436 0.8592 26 6 10.5502 1.6297 0.0155 27 6 9.4603 1.7081 -0.8332 28 6 8.5165 0.7019 -0.8437 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.9500 -0.8400 -0.0004 33 1 3.9716 2.0073 -0.0001 34 1 3.7021 -0.8861 -0.0016 35 1 4.6526 -2.8449 -0.0014 36 1 9.1795 -4.3916 0.5045 37 1 9.9383 -2.7815 0.5036 38 1 12.5480 -4.9855 -0.8665 39 1 9.8784 -1.3114 1.5260 40 1 11.5544 0.4887 1.5192 41 1 11.2861 2.4202 0.0197 42 1 9.3480 2.5588 -1.4890 43 1 7.6664 0.7641 -1.5069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760150613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:19 Heat of formation + Delta-G solvation = 55.714411 kcal Electronic energy + Delta-G solvation = -29364.921084 eV Core-core repulsion = 25219.572876 eV Total energy + Delta-G solvation = -4145.348208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45706 -41.40270 -39.94135 -39.65414 -36.78508 -35.81472 -35.57697 -33.93373 -33.09298 -32.14752 -31.69308 -29.75804 -29.10321 -27.50185 -25.66355 -24.34662 -23.56823 -23.32553 -22.26004 -21.63518 -21.04157 -20.17274 -19.02760 -18.73357 -18.18740 -17.32320 -16.95485 -16.86714 -16.60099 -16.44019 -16.30829 -15.69880 -15.62706 -15.49132 -15.39494 -15.00312 -14.85894 -14.50882 -14.24019 -14.03806 -13.96580 -13.59422 -13.48363 -13.03615 -13.00771 -12.75330 -12.48522 -12.39837 -12.30458 -11.97637 -11.87603 -11.83024 -11.76194 -11.02619 -10.75200 -10.67899 -10.32625 -9.86045 -9.74581 -9.42112 -9.16467 -8.37482 -6.52045 -0.08057 0.57794 0.73252 0.87064 1.25449 1.35136 1.37830 1.48602 1.66438 1.90260 2.06808 2.32052 2.42083 2.95098 2.97239 3.43822 3.45254 3.83020 3.99679 4.04163 4.10505 4.25929 4.28042 4.46731 4.55342 4.59858 4.70612 4.76237 4.84880 4.93749 5.00909 5.01010 5.17669 5.31486 5.37158 5.46473 5.52526 5.55919 5.60280 5.62081 5.64507 5.75329 5.94234 6.10531 6.31389 6.54178 6.62478 6.76880 7.17977 7.21298 7.41442 8.70732 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.012467 B = 0.003169 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.377146 B = 8832.840176 C =10214.514888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.734 5.734 3 C 0.710 3.290 4 O -0.617 6.617 5 N -0.527 5.527 6 N -0.511 5.511 7 C 0.609 3.391 8 O -0.559 6.559 9 C -0.310 4.310 10 C 0.083 3.917 11 N -0.324 5.324 12 N -0.328 5.328 13 C 0.262 3.738 14 C -0.551 4.551 15 H 0.050 0.950 16 C 0.027 3.973 17 N -0.914 5.914 18 Si 0.966 3.034 19 H -0.273 1.273 20 H -0.271 1.271 21 H -0.272 1.272 22 C 0.190 3.810 23 C -0.062 4.062 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.103 4.103 27 C -0.133 4.133 28 C -0.054 4.054 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.410 0.590 33 H 0.439 0.561 34 H 0.434 0.566 35 H 0.240 0.760 36 H 0.034 0.966 37 H 0.058 0.942 38 H 0.274 0.726 39 H 0.110 0.890 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.148 0.852 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 7.714 1.974 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.392 5.392 3 C 0.409 3.591 4 O -0.495 6.495 5 N -0.281 5.281 6 N -0.265 5.265 7 C 0.398 3.602 8 O -0.436 6.436 9 C -0.327 4.327 10 C -0.103 4.103 11 N -0.143 5.143 12 N -0.104 5.104 13 C 0.143 3.857 14 C -0.589 4.589 15 H 0.068 0.932 16 C -0.175 4.175 17 N -0.552 5.552 18 Si 0.790 3.210 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.197 1.197 22 C 0.054 3.946 23 C -0.063 4.063 24 C -0.127 4.127 25 C -0.151 4.151 26 C -0.121 4.121 27 C -0.151 4.151 28 C -0.073 4.073 29 H 0.135 0.865 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.284 0.716 34 H 0.278 0.722 35 H 0.256 0.744 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.162 0.838 41 H 0.173 0.827 42 H 0.166 0.834 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.534 7.593 2.035 15.651 hybrid contribution 0.559 -0.225 -0.624 0.868 sum -12.974 7.368 1.410 14.987 Atomic orbital electron populations 1.21668 0.76257 1.04704 1.01787 1.44905 1.08995 1.06275 1.79032 1.15844 0.79883 0.85267 0.78135 1.90997 1.65502 1.32192 1.60791 1.44418 1.02128 1.01272 1.80301 1.44332 1.03735 1.00338 1.78074 1.16988 0.79901 0.87889 0.75378 1.90810 1.67671 1.33156 1.51982 1.19614 0.90817 0.93698 1.28528 1.24605 1.00796 0.88149 0.96730 1.77103 0.89311 1.22848 1.25030 1.49345 1.07576 1.03168 1.50312 1.19573 0.73814 0.93910 0.98377 1.21363 1.03298 1.42797 0.91464 0.93210 1.25641 0.95786 0.94083 1.01953 1.69987 1.11419 1.40993 1.32810 0.85383 0.78323 0.78347 0.78949 1.19744 1.19627 1.19683 1.20169 0.94017 0.84926 0.95487 1.18066 0.94427 0.93740 1.00113 1.21315 0.93935 0.98981 0.98436 1.21270 0.99048 0.94109 1.00654 1.21599 0.97838 0.98082 0.94548 1.21338 0.94399 0.99075 1.00299 1.21145 0.97815 0.92040 0.96321 0.86463 0.92855 0.92903 0.75348 0.71624 0.72181 0.74366 0.94822 0.92465 0.91727 0.87214 0.83831 0.82664 0.83400 0.86174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.70 127.77 1.37 2.34 16 2 N -0.73 -9.40 5.68 -500.20 -2.84 -12.24 16 3 C 0.71 15.36 8.68 179.05 1.55 16.91 16 4 O -0.62 -18.49 17.18 -3.97 -0.07 -18.56 16 5 N -0.53 -11.15 6.26 -184.75 -1.16 -12.31 16 6 N -0.51 -9.61 6.25 -176.05 -1.10 -10.71 16 7 C 0.61 16.84 7.81 86.59 0.68 17.52 16 8 O -0.56 -18.55 12.76 -4.14 -0.05 -18.60 16 9 C -0.31 -9.76 6.13 -19.95 -0.12 -9.88 16 10 C 0.08 2.29 11.48 85.60 0.98 3.27 16 11 N -0.32 -12.48 12.48 -56.41 -0.70 -13.18 16 12 N -0.33 -14.36 3.59 -338.04 -1.21 -15.57 16 13 C 0.26 13.11 5.96 85.64 0.51 13.62 16 14 C -0.55 -29.87 9.39 25.60 0.24 -29.63 16 15 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 16 C 0.03 1.43 5.46 84.66 0.46 1.89 16 17 N -0.91 -50.20 13.29 21.45 0.28 -49.91 16 18 Si 0.97 42.25 29.54 68.60 2.03 44.28 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 C 0.19 7.49 6.50 41.43 0.27 7.76 16 23 C -0.06 -2.38 5.26 -20.10 -0.11 -2.48 16 24 C -0.11 -4.00 8.50 22.53 0.19 -3.80 16 25 C -0.13 -4.08 10.03 22.23 0.22 -3.86 16 26 C -0.10 -2.77 10.04 22.33 0.22 -2.55 16 27 C -0.13 -3.88 10.03 22.23 0.22 -3.65 16 28 C -0.05 -1.89 7.54 22.54 0.17 -1.72 16 29 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.41 2.62 6.75 -92.71 -0.63 1.99 16 33 H 0.44 10.39 8.10 -213.32 -1.73 8.66 16 34 H 0.43 4.71 5.65 -213.32 -1.20 3.50 16 35 H 0.24 3.09 7.49 -2.91 -0.02 3.07 16 36 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.06 2.90 5.09 -2.39 -0.01 2.89 16 38 H 0.27 14.04 8.31 -92.70 -0.77 13.26 16 39 H 0.11 4.22 6.57 -2.91 -0.02 4.20 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.61 16 41 H 0.16 2.99 8.06 -2.91 -0.02 2.96 16 42 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.12 4.21 6.74 -2.91 -0.02 4.19 16 Total: -1.00 -75.65 371.10 -0.41 -76.06 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -2.45 Total: 25.01 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 6.87 Total: 5.74 kcal Atomic # 7 Polarization: -107.20 SS G_CDS: -6.73 Total: -113.93 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.12 Total: -37.16 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.28 kcal Total: -75.65 -0.41 -76.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760150613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.777 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds