Wall clock time and date at job start Wed Apr 1 2020 01:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46505 * 119.99711 * 2 1 4 4 C 1.39838 * 120.00084 * 180.02562 * 2 1 3 5 5 C 1.38919 * 119.99787 * 179.72306 * 4 2 1 6 6 C 1.38030 * 119.99999 * 179.72038 * 5 4 2 7 7 C 1.38928 * 119.99497 * 0.57107 * 6 5 4 8 8 N 1.39899 * 119.99730 * 179.68019 * 7 6 5 9 9 C 1.34783 * 119.99871 * 213.39226 * 8 7 6 10 10 O 1.21412 * 119.99822 * 5.27672 * 9 8 7 11 11 C 1.49188 * 119.99892 * 185.27389 * 9 8 7 12 12 O 1.21421 * 120.00046 * 0.02562 * 11 9 8 13 13 N 1.34770 * 119.99732 * 179.97438 * 11 9 8 14 14 C 1.40306 * 120.00261 * 180.02562 * 13 11 9 15 15 C 1.40728 * 126.09379 * 359.69369 * 14 13 11 16 16 N 1.30871 * 108.37180 * 179.81710 * 15 14 13 17 17 N 1.40064 * 108.44038 * 0.43757 * 16 15 14 18 18 C 1.37291 * 126.06161 * 179.69960 * 17 16 15 19 19 H 1.08000 * 120.00347 * 180.02562 * 18 17 16 20 20 C 1.39016 * 119.99650 * 0.02562 * 18 17 16 21 21 N 1.31276 * 119.99804 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99749 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47079 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46911 * 120.00023 * 22 20 18 25 25 H 1.48494 * 109.47029 * 239.99936 * 22 20 18 26 26 C 1.35784 * 126.10308 * 180.02562 * 14 13 11 27 27 C 1.38925 * 119.99912 * 359.70721 * 7 6 5 28 28 C 1.38028 * 119.99972 * 359.97438 * 27 7 6 29 29 H 1.09001 * 109.46825 * 269.99816 * 1 2 3 30 30 H 1.08997 * 109.47629 * 29.99752 * 1 2 3 31 31 H 1.09004 * 109.47171 * 150.00173 * 1 2 3 32 32 H 1.09005 * 109.46628 * 240.00000 * 3 2 1 33 33 H 1.09001 * 109.47239 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.46945 * 120.00558 * 3 2 1 35 35 H 1.08000 * 119.99791 * 359.97438 * 5 4 2 36 36 H 1.08000 * 119.99705 * 180.27887 * 6 5 4 37 37 H 0.96997 * 120.00498 * 33.38830 * 8 7 6 38 38 H 0.97000 * 120.00411 * 0.02562 * 13 11 9 39 39 H 1.08003 * 125.81004 * 359.97438 * 15 14 13 40 40 H 0.97004 * 119.99764 * 179.97438 * 21 20 18 41 41 H 1.07999 * 126.24732 * 359.97438 * 26 14 13 42 42 H 1.08001 * 119.99525 * 179.97438 * 27 7 6 43 43 H 1.08005 * 119.99609 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1642 -1.2110 -0.0005 5 6 3.5534 -1.2110 -0.0064 6 6 4.2436 -2.4063 -0.0011 7 6 3.5490 -3.6094 -0.0019 8 7 4.2485 -4.8209 -0.0033 9 6 3.7412 -5.8913 -0.6465 10 8 2.7268 -5.7797 -1.3042 11 6 4.4263 -7.2131 -0.5504 12 8 5.4406 -7.3247 0.1077 13 7 3.9188 -8.2834 -1.1931 14 6 4.5627 -9.5266 -1.1023 15 6 5.7423 -9.7989 -0.3848 16 7 6.0323 -11.0664 -0.5335 17 7 5.0602 -11.6498 -1.3560 18 6 5.0186 -12.9640 -1.7508 19 1 4.2201 -13.3108 -2.3900 20 6 6.0043 -13.8483 -1.3279 21 7 6.9751 -13.4266 -0.5514 22 14 5.9480 -15.6364 -1.8657 23 1 4.7628 -15.8553 -2.7333 24 1 7.1826 -15.9645 -2.6230 25 1 5.8543 -16.5105 -0.6690 26 6 4.1624 -10.6803 -1.6961 27 6 2.1597 -3.6094 -0.0019 28 6 1.4696 -2.4140 -0.0006 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 2.8241 1.3265 -0.8900 33 1 1.4891 2.0973 -0.0005 34 1 2.8242 1.3265 0.8899 35 1 4.0933 -0.2756 -0.0109 36 1 5.3236 -2.4061 -0.0010 37 1 5.0986 -4.8907 0.4586 38 1 3.1083 -8.1943 -1.7185 39 1 6.3101 -9.0841 0.1924 40 1 7.6627 -14.0438 -0.2559 41 1 3.2919 -10.8073 -2.3226 42 1 1.6198 -4.5447 -0.0030 43 1 0.3896 -2.4141 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000781985224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:50:22 Heat of formation + Delta-G solvation = 45.700163 kcal Electronic energy + Delta-G solvation = -27831.026536 eV Core-core repulsion = 23685.244078 eV Total energy + Delta-G solvation = -4145.782459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.21024 -41.47672 -40.42352 -39.39838 -37.50750 -36.20104 -35.25523 -34.79769 -32.30290 -32.12381 -30.35244 -29.76857 -28.97238 -27.32243 -26.21235 -24.73044 -23.66697 -22.94017 -22.12159 -21.40364 -21.16887 -19.85094 -19.20602 -18.63649 -17.83630 -17.46561 -17.17633 -17.02798 -16.80645 -16.36545 -15.90342 -15.74225 -15.61536 -15.43473 -15.14341 -14.88679 -14.85074 -14.62099 -14.23553 -13.66288 -13.59556 -13.51920 -13.40076 -13.37591 -12.99493 -12.94173 -12.89728 -12.82481 -12.41995 -12.02383 -12.01248 -11.99663 -11.54570 -11.08838 -10.87594 -10.61392 -10.14536 -10.08522 -9.88607 -8.63594 -8.49061 -8.01103 -6.26805 0.01253 0.48059 0.69589 1.25768 1.29208 1.42339 1.60479 1.71920 2.01614 2.11522 2.27839 2.50914 2.56683 2.90176 2.93258 3.07661 3.46972 3.90945 4.04351 4.21197 4.37857 4.39664 4.42647 4.51835 4.52281 4.57886 4.65010 4.82087 4.92421 4.92827 4.94924 4.97895 4.98481 5.13712 5.19606 5.26711 5.29635 5.40885 5.47497 5.83157 5.91444 6.04361 6.24514 6.38232 6.45948 6.52811 6.67031 6.78773 7.03327 7.41034 7.62517 8.50365 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.046359 B = 0.001670 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.831552 B =16758.660165 C =17233.635691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.643 5.643 3 C 0.091 3.909 4 C 0.199 3.801 5 C -0.179 4.179 6 C -0.085 4.085 7 C 0.058 3.942 8 N -0.627 5.627 9 C 0.522 3.478 10 O -0.524 6.524 11 C 0.490 3.510 12 O -0.541 6.541 13 N -0.579 5.579 14 C -0.058 4.058 15 C -0.047 4.047 16 N -0.308 5.308 17 N -0.163 5.163 18 C -0.353 4.353 19 H 0.142 0.858 20 C -0.005 4.005 21 N -0.821 5.821 22 Si 1.020 2.980 23 H -0.241 1.241 24 H -0.272 1.272 25 H -0.272 1.272 26 C -0.073 4.073 27 C -0.083 4.083 28 C -0.187 4.187 29 H 0.052 0.948 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.427 0.573 38 H 0.424 0.576 39 H 0.176 0.824 40 H 0.278 0.722 41 H 0.189 0.811 42 H 0.119 0.881 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.504 26.275 0.038 28.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.355 5.355 3 C -0.052 4.052 4 C 0.096 3.904 5 C -0.202 4.202 6 C -0.106 4.106 7 C -0.036 4.036 8 N -0.274 5.274 9 C 0.304 3.696 10 O -0.400 6.400 11 C 0.272 3.728 12 O -0.419 6.419 13 N -0.224 5.224 14 C -0.164 4.164 15 C -0.222 4.222 16 N -0.139 5.139 17 N 0.069 4.931 18 C -0.484 4.484 19 H 0.160 0.840 20 C -0.217 4.217 21 N -0.448 5.448 22 Si 0.838 3.162 23 H -0.164 1.164 24 H -0.197 1.197 25 H -0.197 1.197 26 C -0.224 4.224 27 C -0.104 4.104 28 C -0.210 4.210 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.165 0.835 37 H 0.266 0.734 38 H 0.262 0.738 39 H 0.193 0.807 40 H 0.088 0.912 41 H 0.205 0.795 42 H 0.137 0.863 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.614 25.442 0.453 27.571 hybrid contribution -0.294 -0.236 -0.220 0.437 sum -10.909 25.206 0.233 27.466 Atomic orbital electron populations 1.21811 0.78554 1.03509 1.01697 1.46604 1.05823 1.03097 1.79985 1.21770 0.97605 0.84302 1.01508 1.18027 0.91674 0.86263 0.94440 1.20679 0.91920 0.98552 1.09013 1.20903 1.00734 0.89824 0.99092 1.17711 0.91545 0.84684 1.09646 1.42945 1.25006 1.08208 1.51249 1.19761 0.84852 0.85066 0.79937 1.90747 1.24711 1.84878 1.39653 1.19996 0.85562 0.85404 0.81843 1.90660 1.25116 1.84781 1.41337 1.42040 1.27600 1.05404 1.47357 1.17292 1.00236 0.85964 1.12943 1.24262 0.98262 0.94643 1.05071 1.78160 1.13473 1.07139 1.15162 1.44849 1.13849 1.07332 1.27051 1.20712 1.14095 0.80993 1.32646 0.84042 1.26883 0.93794 1.06182 0.94829 1.70379 1.10147 1.37614 1.26692 0.84526 0.79689 0.73383 0.78554 1.16406 1.19726 1.19716 1.22001 1.01434 0.88114 1.10870 1.20911 0.92670 0.98644 0.98139 1.20678 1.00382 0.90280 1.09640 0.92963 0.89664 0.91591 0.92531 0.89018 0.92384 0.83463 0.83470 0.73370 0.73818 0.80677 0.91227 0.79451 0.86318 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 10.16 127.77 1.30 2.08 16 2 N -0.64 -8.30 3.41 -747.08 -2.55 -10.85 16 3 C 0.09 0.68 9.40 127.77 1.20 1.88 16 4 C 0.20 3.54 6.56 38.19 0.25 3.79 16 5 C -0.18 -2.96 9.31 22.38 0.21 -2.75 16 6 C -0.09 -1.58 9.96 22.39 0.22 -1.36 16 7 C 0.06 1.39 6.28 38.18 0.24 1.63 16 8 N -0.63 -15.90 5.33 -304.83 -1.62 -17.53 16 9 C 0.52 15.92 7.62 87.19 0.66 16.58 16 10 O -0.52 -17.02 14.16 -3.44 -0.05 -17.07 16 11 C 0.49 17.63 7.85 87.19 0.68 18.31 16 12 O -0.54 -21.97 13.63 -3.47 -0.05 -22.02 16 13 N -0.58 -21.46 5.45 -305.43 -1.66 -23.12 16 14 C -0.06 -2.68 6.90 37.82 0.26 -2.42 16 15 C -0.05 -2.50 10.85 85.44 0.93 -1.57 16 16 N -0.31 -18.27 10.39 -56.43 -0.59 -18.86 16 17 N -0.16 -8.97 3.73 -189.97 -0.71 -9.68 16 18 C -0.35 -18.54 10.25 84.03 0.86 -17.67 16 19 H 0.14 6.44 7.83 -2.91 -0.02 6.42 16 20 C 0.00 -0.24 5.50 84.96 0.47 0.22 16 21 N -0.82 -46.72 11.81 21.67 0.26 -46.46 16 22 Si 1.02 38.15 29.55 68.60 2.03 40.17 16 23 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 24 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 25 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 26 C -0.07 -3.40 11.50 83.41 0.96 -2.44 16 27 C -0.08 -2.04 8.65 22.38 0.19 -1.85 16 28 C -0.19 -3.79 9.20 22.38 0.21 -3.59 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.43 7.92 -2.39 -0.02 0.41 16 31 H 0.07 0.65 6.19 -2.39 -0.01 0.63 16 32 H 0.06 0.41 7.94 -2.38 -0.02 0.39 16 33 H 0.09 0.33 7.79 -2.39 -0.02 0.31 16 34 H 0.06 0.40 7.96 -2.39 -0.02 0.38 16 35 H 0.15 1.70 6.72 -2.91 -0.02 1.68 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.43 9.55 8.29 -92.71 -0.77 8.78 16 38 H 0.42 13.17 8.29 -92.71 -0.77 12.41 16 39 H 0.18 9.15 5.92 -2.91 -0.02 9.13 16 40 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.19 6.95 8.06 -2.91 -0.02 6.93 16 42 H 0.12 3.24 6.41 -2.91 -0.02 3.22 16 43 H 0.14 2.31 6.13 -2.91 -0.02 2.30 16 Total: -1.00 -74.72 368.70 3.26 -71.46 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -0.44 Total: 43.12 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: 8.64 Total: 10.84 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -6.88 Total: -126.50 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -0.10 Total: -39.09 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.17 kcal Total: -74.72 3.26 -71.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000781985224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.158 kcal (2) G-P(sol) polarization free energy of solvation -74.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds