Wall clock time and date at job start Wed Apr 1 2020 01:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40108 * 119.99519 * 2 1 4 4 C 1.34770 * 120.00092 * 285.00248 * 3 2 1 5 5 O 1.21356 * 119.99891 * 359.97438 * 4 3 2 6 6 C 1.49344 * 119.99921 * 180.02562 * 4 3 2 7 7 O 1.21384 * 120.00020 * 359.97438 * 6 4 3 8 8 N 1.34778 * 120.00156 * 180.02562 * 6 4 3 9 9 C 1.39929 * 120.00092 * 179.97438 * 8 6 4 10 10 C 1.40453 * 125.98081 * 0.02562 * 9 8 6 11 11 C 1.35215 * 107.86384 * 179.70233 * 10 9 8 12 12 N 1.34979 * 107.87970 * 0.42460 * 11 10 9 13 13 C 1.46500 * 125.97555 * 179.83561 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71172 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 N 1.31273 * 125.97556 * 179.97438 * 9 8 6 23 23 C 1.39670 * 120.00433 * 179.97438 * 2 1 3 24 24 C 1.38916 * 120.07349 * 179.72558 * 23 2 1 25 25 C 1.38108 * 119.92173 * 179.74234 * 24 23 2 26 26 C 1.38284 * 120.07171 * 0.51125 * 25 24 23 27 27 C 1.38282 * 120.15589 * 359.76577 * 26 25 24 28 28 C 1.38109 * 120.06927 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47073 * 90.00364 * 1 2 3 30 30 H 1.09004 * 109.46787 * 209.99699 * 1 2 3 31 31 H 1.08999 * 109.47343 * 329.99696 * 1 2 3 32 32 H 0.97003 * 119.99679 * 104.99584 * 3 2 1 33 33 H 0.97004 * 119.99424 * 359.97438 * 8 6 4 34 34 H 1.07999 * 126.06662 * 0.02562 * 10 9 8 35 35 H 1.08003 * 126.05960 * 180.28377 * 11 10 9 36 36 H 1.09004 * 109.47078 * 4.71934 * 13 12 11 37 37 H 1.08993 * 109.47364 * 244.71705 * 13 12 11 38 38 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 39 39 H 1.07997 * 120.03825 * 0.02562 * 24 23 2 40 40 H 1.08001 * 119.96250 * 180.25600 * 25 24 23 41 41 H 1.08011 * 119.92092 * 179.74123 * 26 25 24 42 42 H 1.07997 * 119.96708 * 179.97438 * 27 26 25 43 43 H 1.08001 * 120.03073 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1654 1.2134 0.0000 4 6 2.2407 1.9481 -1.1274 5 8 1.7021 1.5584 -2.1426 6 6 2.9878 3.2412 -1.1275 7 8 3.5268 3.6308 -0.1121 8 7 3.0626 3.9762 -2.2547 9 6 3.7621 5.1881 -2.2547 10 6 4.4303 5.7551 -1.1571 11 6 4.9838 6.9195 -1.5648 12 7 4.6729 7.0926 -2.8668 13 6 5.0699 8.2283 -3.7028 14 6 5.7902 7.7238 -4.9266 15 1 5.9372 6.6632 -5.0677 16 6 6.2616 8.6161 -5.8660 17 7 6.0779 9.9073 -5.6967 18 14 7.1539 7.9906 -7.3833 19 1 7.5511 9.1415 -8.2336 20 1 8.3661 7.2388 -6.9699 21 1 6.2538 7.0943 -8.1524 22 7 3.9095 5.9935 -3.2808 23 6 2.1634 -1.2095 0.0005 24 6 3.5526 -1.2112 -0.0052 25 6 4.2401 -2.4090 0.0007 26 6 3.5471 -3.6057 0.0017 27 6 2.1643 -3.6077 0.0016 28 6 1.4706 -2.4134 0.0011 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 2.5961 1.5248 0.8115 33 1 2.6314 3.6650 -3.0660 34 1 4.4953 5.3332 -0.1650 35 1 5.5689 7.5928 -0.9559 36 1 5.7318 8.8830 -3.1358 37 1 4.1826 8.7836 -4.0065 38 1 5.6144 10.2321 -4.9090 39 1 4.0943 -0.2770 -0.0097 40 1 5.3201 -2.4111 0.0004 41 1 4.0872 -4.5410 0.0021 42 1 1.6262 -4.5440 0.0020 43 1 0.3906 -2.4157 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000783431138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:49:33 Heat of formation + Delta-G solvation = 75.760957 kcal Electronic energy + Delta-G solvation = -28109.917798 eV Core-core repulsion = 23965.438873 eV Total energy + Delta-G solvation = -4144.478925 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.60635 -41.76894 -40.54593 -39.61973 -37.55279 -36.60538 -35.64367 -33.76359 -32.79845 -31.82975 -31.12588 -30.54805 -28.63632 -27.53449 -26.03283 -24.85395 -23.49923 -22.95812 -22.37310 -21.84722 -21.26898 -20.03759 -19.27922 -19.06231 -18.29363 -17.96303 -17.57442 -17.22447 -16.79312 -16.58978 -16.12817 -15.79723 -15.63948 -15.40757 -15.22434 -15.07763 -14.97678 -14.89809 -14.35239 -14.20949 -13.99630 -13.82620 -13.56776 -13.29119 -13.16472 -12.90684 -12.63866 -12.39258 -12.21470 -11.96861 -11.91010 -11.73587 -11.39678 -11.06099 -11.03111 -10.78746 -10.70681 -9.95610 -9.86817 -9.34267 -8.79739 -8.52065 -6.57092 -0.15142 0.18170 0.49189 0.62961 0.99994 1.27322 1.50405 1.56357 1.58777 1.77933 2.02919 2.11128 2.47049 2.76202 2.94166 2.99936 3.20481 3.77194 3.97712 4.04414 4.07105 4.25667 4.34325 4.46220 4.48800 4.58566 4.59371 4.62693 4.70990 4.72840 4.74057 4.82640 4.85159 5.11238 5.26824 5.47940 5.55064 5.55279 5.64222 5.71154 5.77511 5.86931 5.93294 5.96268 6.23331 6.27258 6.39122 6.45942 6.82477 6.91434 7.17742 8.57662 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.017985 B = 0.001969 C = 0.001880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.439498 B =14213.695314 C =14886.789757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.434 5.434 3 N -0.477 5.477 4 C 0.525 3.475 5 O -0.520 6.520 6 C 0.530 3.470 7 O -0.499 6.499 8 N -0.597 5.597 9 C 0.261 3.739 10 C -0.283 4.283 11 C 0.061 3.939 12 N -0.338 5.338 13 C 0.258 3.742 14 C -0.623 4.623 15 H 0.044 0.956 16 C -0.018 4.018 17 N -0.922 5.922 18 Si 1.118 2.882 19 H -0.275 1.275 20 H -0.271 1.271 21 H -0.278 1.278 22 N -0.340 5.340 23 C 0.192 3.808 24 C -0.207 4.207 25 C -0.085 4.085 26 C -0.176 4.176 27 C -0.076 4.076 28 C -0.186 4.186 29 H 0.049 0.951 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.437 0.563 33 H 0.429 0.571 34 H 0.181 0.819 35 H 0.208 0.792 36 H 0.059 0.941 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.139 0.861 42 H 0.151 0.849 43 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.667 -25.237 17.306 32.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.239 5.239 3 N -0.224 5.224 4 C 0.304 3.696 5 O -0.393 6.393 6 C 0.309 3.691 7 O -0.372 6.372 8 N -0.247 5.247 9 C 0.006 3.994 10 C -0.314 4.314 11 C -0.088 4.088 12 N -0.120 5.120 13 C 0.138 3.862 14 C -0.661 4.661 15 H 0.063 0.937 16 C -0.218 4.218 17 N -0.558 5.558 18 Si 0.939 3.061 19 H -0.199 1.199 20 H -0.196 1.196 21 H -0.203 1.203 22 N -0.171 5.171 23 C 0.094 3.906 24 C -0.229 4.229 25 C -0.104 4.104 26 C -0.196 4.196 27 C -0.094 4.094 28 C -0.209 4.209 29 H 0.067 0.933 30 H 0.131 0.869 31 H 0.101 0.899 32 H 0.282 0.718 33 H 0.267 0.733 34 H 0.198 0.802 35 H 0.225 0.775 36 H 0.077 0.923 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.129 0.871 40 H 0.151 0.849 41 H 0.157 0.843 42 H 0.169 0.831 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.283 -24.294 14.677 29.863 hybrid contribution -0.553 0.026 1.900 1.979 sum -9.836 -24.267 16.577 30.991 Atomic orbital electron populations 1.22140 0.74580 1.05291 1.02438 1.45670 1.02967 0.92544 1.82752 1.44284 1.52616 1.13102 1.12395 1.20042 0.81011 0.84468 0.84106 1.90816 1.45142 1.70879 1.32479 1.19828 0.81479 0.84747 0.83054 1.90714 1.44364 1.70216 1.31882 1.42017 1.50741 1.17256 1.14673 1.19275 0.97702 0.88536 0.93842 1.21780 1.09965 0.98273 1.01384 1.23279 1.00457 0.99480 0.85545 1.48647 1.38306 1.16365 1.08669 1.19484 0.94931 0.81328 0.90413 1.22279 1.40659 0.95351 1.07767 0.93726 1.27222 0.96603 0.93566 1.04421 1.70949 1.40462 1.14339 1.30038 0.82897 0.75783 0.75330 0.72095 1.19949 1.19579 1.20317 1.77349 1.19304 0.98632 1.21787 1.18165 0.91646 0.84476 0.96347 1.20776 0.92567 0.99297 1.10253 1.21176 1.00572 0.91897 0.96737 1.21319 0.94916 0.98366 1.04999 1.21288 0.94304 0.97991 0.95864 1.20950 1.01009 0.89963 1.08998 0.93282 0.86877 0.89943 0.71803 0.73305 0.80241 0.77496 0.92293 0.96358 0.92870 0.87143 0.84884 0.84277 0.83107 0.83488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.14 10.26 127.77 1.31 2.45 16 2 N -0.43 -7.50 3.30 -360.81 -1.19 -8.69 16 3 N -0.48 -8.85 4.80 -174.59 -0.84 -9.69 16 4 C 0.52 12.50 7.92 87.24 0.69 13.20 16 5 O -0.52 -14.94 16.68 -3.27 -0.05 -15.00 16 6 C 0.53 14.28 7.85 87.24 0.69 14.97 16 7 O -0.50 -13.98 13.60 -3.35 -0.05 -14.03 16 8 N -0.60 -18.74 5.43 -308.90 -1.68 -20.41 16 9 C 0.26 10.09 8.10 133.40 1.08 11.17 16 10 C -0.28 -10.09 9.60 22.11 0.21 -9.88 16 11 C 0.06 2.21 11.43 83.51 0.95 3.17 16 12 N -0.34 -15.38 3.67 -351.85 -1.29 -16.67 16 13 C 0.26 12.95 5.57 85.64 0.48 13.43 16 14 C -0.62 -35.11 9.24 25.60 0.24 -34.88 16 15 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 16 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 17 N -0.92 -53.44 13.65 21.45 0.29 -53.14 16 18 Si 1.12 49.76 29.90 68.60 2.05 51.82 16 19 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 20 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 22 N -0.34 -15.69 12.42 -54.54 -0.68 -16.37 16 23 C 0.19 3.47 6.62 38.21 0.25 3.72 16 24 C -0.21 -4.00 9.51 22.40 0.21 -3.79 16 25 C -0.09 -1.40 10.04 22.25 0.22 -1.17 16 26 C -0.18 -2.38 10.04 22.29 0.22 -2.16 16 27 C -0.08 -0.92 10.04 22.25 0.22 -0.69 16 28 C -0.19 -2.57 9.21 22.40 0.21 -2.36 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.68 6.20 -2.38 -0.01 0.67 16 31 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.44 6.64 8.30 -213.31 -1.77 4.87 16 33 H 0.43 12.65 8.29 -92.71 -0.77 11.88 16 34 H 0.18 5.74 5.91 -2.91 -0.02 5.72 16 35 H 0.21 5.72 8.06 -2.91 -0.02 5.69 16 36 H 0.06 2.80 7.94 -2.39 -0.02 2.79 16 37 H 0.02 0.98 8.00 -2.39 -0.02 0.96 16 38 H 0.26 14.93 7.22 -92.71 -0.67 14.26 16 39 H 0.11 2.23 7.36 -2.91 -0.02 2.20 16 40 H 0.13 1.76 8.06 -2.91 -0.02 1.74 16 41 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 42 H 0.15 0.96 8.06 -2.91 -0.02 0.93 16 43 H 0.15 1.29 6.14 -2.91 -0.02 1.27 16 Total: -1.00 -72.94 377.36 2.67 -70.27 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -1.35 Total: 25.30 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: 7.45 Total: 6.62 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -5.38 Total: -124.98 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -0.10 Total: -29.03 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.82 kcal Total: -72.94 2.67 -70.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000783431138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.033 kcal (2) G-P(sol) polarization free energy of solvation -72.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds