Wall clock time and date at job start Wed Apr 1 2020 02:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57888 * 2 1 4 4 O 1.42099 * 108.58220 * 228.97273 * 2 1 3 5 5 C 1.81402 * 101.92260 * 114.48467 * 2 1 3 6 6 C 1.52997 * 109.47325 * 180.02562 * 5 2 1 7 7 N 1.46502 * 109.47220 * 180.02562 * 6 5 2 8 8 C 1.34965 * 125.97705 * 124.98369 * 7 6 5 9 9 C 1.35238 * 107.86346 * 180.02562 * 8 7 6 10 10 C 1.40410 * 107.86643 * 359.97438 * 9 8 7 11 11 N 1.40158 * 125.97643 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99807 * 0.02562 * 11 10 9 13 13 O 1.21294 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47203 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47379 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47379 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47508 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00474 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46925 * 60.00242 * 22 20 18 24 24 H 1.48495 * 109.47591 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47088 * 300.00668 * 22 20 18 26 26 N 1.31224 * 108.05286 * 359.97438 * 10 9 8 27 27 H 1.09004 * 109.47370 * 305.51433 * 1 2 3 28 28 H 1.08999 * 109.47530 * 65.51553 * 1 2 3 29 29 H 1.09001 * 109.47384 * 185.51614 * 1 2 3 30 30 H 1.09001 * 109.47133 * 59.99688 * 5 2 1 31 31 H 1.09005 * 109.47141 * 300.00255 * 5 2 1 32 32 H 1.09004 * 109.47173 * 60.00094 * 6 5 2 33 33 H 1.08995 * 109.46974 * 300.00083 * 6 5 2 34 34 H 1.07999 * 126.06888 * 0.05322 * 8 7 6 35 35 H 1.07998 * 126.07029 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00507 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46828 * 299.99542 * 14 12 11 38 38 H 1.09000 * 109.47349 * 60.00108 * 14 12 11 39 39 H 1.09005 * 109.47003 * 300.00041 * 15 14 12 40 40 H 1.08999 * 109.47512 * 59.99276 * 15 14 12 41 41 H 1.09005 * 109.47106 * 300.00001 * 16 15 14 42 42 H 1.09005 * 109.47585 * 59.99882 * 16 15 14 43 43 H 1.08999 * 109.46938 * 299.99601 * 17 16 15 44 44 H 1.08993 * 109.47450 * 59.99758 * 17 16 15 45 45 H 0.97005 * 120.00028 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 7 4.0080 -1.4130 3.1028 8 6 4.7850 -2.4950 3.3198 9 6 4.8140 -2.7244 4.6522 10 6 4.0247 -1.7445 5.2753 11 7 3.7925 -1.6275 6.6526 12 6 4.3518 -2.5068 7.5073 13 8 5.0556 -3.3996 7.0845 14 6 4.1018 -2.3814 8.9881 15 6 4.8460 -3.4953 9.7271 16 6 4.5927 -3.3676 11.2305 17 6 5.3363 -4.4819 11.9695 18 6 5.0863 -4.3566 13.4504 19 1 4.4600 -3.5613 13.8268 20 6 5.6571 -5.2570 14.3246 21 7 6.4203 -6.2251 13.8663 22 14 5.3478 -5.1012 16.1602 23 1 3.8916 -5.2149 16.4282 24 1 6.0695 -6.1827 16.8774 25 1 5.8367 -3.7815 16.6343 26 7 3.5423 -0.9574 4.3428 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 1.7610 -1.7369 1.6666 31 1 1.7610 -0.1170 2.4043 32 1 4.1327 0.1831 1.7474 33 1 4.1335 -1.4367 1.0096 34 1 5.2936 -3.0746 2.5636 35 1 5.3493 -3.5201 5.1489 36 1 3.2300 -0.9133 6.9907 37 1 4.4592 -1.4122 9.3360 38 1 3.0330 -2.4665 9.1846 39 1 4.4882 -4.4643 9.3790 40 1 5.9148 -3.4108 9.5306 41 1 4.9508 -2.3986 11.5783 42 1 3.5239 -3.4520 11.4275 43 1 4.9778 -5.4507 11.6217 44 1 6.4051 -4.3981 11.7728 45 1 6.8222 -6.8584 14.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000806917640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:01 Heat of formation + Delta-G solvation = -34.960866 kcal Electronic energy + Delta-G solvation = -25934.130696 eV Core-core repulsion = 21888.001713 eV Total energy + Delta-G solvation = -4046.128983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62990 -39.73506 -37.66710 -36.73843 -35.76692 -34.90920 -34.15050 -32.64455 -30.70179 -30.32220 -29.98195 -29.21762 -25.95432 -24.44289 -22.89381 -21.83200 -20.86611 -20.06103 -19.99308 -19.54408 -17.99957 -17.30568 -16.97564 -16.80526 -16.65778 -16.22790 -16.07745 -15.96508 -15.47375 -14.77722 -14.49481 -14.15053 -14.06461 -13.98592 -13.89703 -13.62279 -13.25987 -13.23456 -12.76662 -12.66955 -12.64921 -12.46918 -12.25469 -11.81087 -11.74288 -11.63395 -11.43751 -11.04119 -10.98478 -10.96812 -10.56299 -10.54382 -10.44047 -9.88657 -9.62850 -9.25361 -9.10929 -9.01164 -8.48701 -8.30544 -5.95505 -3.98177 -0.79146 1.47270 1.83254 1.97624 2.25200 2.81935 3.02162 3.03500 3.30020 3.35199 3.39776 3.41855 3.67755 3.87102 4.11026 4.19895 4.36132 4.43529 4.48998 4.60033 4.71375 4.94288 4.97958 5.16500 5.19374 5.28193 5.39891 5.43869 5.56704 5.77648 6.00560 6.08922 6.24242 6.50192 6.57006 6.73135 6.80209 6.89967 6.98988 7.18476 7.60549 7.73101 7.88915 8.01676 8.05630 8.47154 9.09253 9.65554 11.15697 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.001334 C = 0.001312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.971554 B =20984.966206 C =21331.775359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.428 3.572 3 O -0.932 6.932 4 O -0.935 6.935 5 C -0.634 4.634 6 C 0.157 3.843 7 N -0.371 5.371 8 C 0.062 3.938 9 C -0.262 4.262 10 C 0.306 3.694 11 N -0.643 5.643 12 C 0.521 3.479 13 O -0.507 6.507 14 C -0.134 4.134 15 C -0.104 4.104 16 C -0.111 4.111 17 C 0.020 3.980 18 C -0.522 4.522 19 H 0.054 0.946 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 N -0.328 5.328 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.147 0.853 32 H 0.100 0.900 33 H 0.113 0.887 34 H 0.180 0.820 35 H 0.176 0.824 36 H 0.415 0.585 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.355 13.748 -31.056 36.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.608 3.392 3 O -0.930 6.930 4 O -0.932 6.932 5 C -0.762 4.762 6 C 0.034 3.966 7 N -0.156 5.156 8 C -0.083 4.083 9 C -0.292 4.292 10 C 0.050 3.950 11 N -0.293 5.293 12 C 0.309 3.691 13 O -0.379 6.379 14 C -0.174 4.174 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.017 4.017 18 C -0.560 4.560 19 H 0.072 0.928 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 N -0.158 5.158 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.165 0.835 32 H 0.118 0.882 33 H 0.131 0.869 34 H 0.197 0.803 35 H 0.193 0.807 36 H 0.251 0.749 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.035 0.965 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.865 14.252 -32.246 37.198 hybrid contribution -0.671 -0.552 1.979 2.161 sum -12.536 13.701 -30.268 35.510 Atomic orbital electron populations 1.30220 1.25800 1.11936 1.12195 1.07679 0.78815 0.75771 0.76896 1.93638 1.79124 1.34087 1.86101 1.93630 1.79216 1.67080 1.53277 1.30806 1.05079 1.15466 1.24867 1.21194 0.91909 1.01566 0.81947 1.47897 1.39657 1.23614 1.04428 1.22697 0.96566 0.90788 0.98208 1.21977 1.09503 1.05652 0.92077 1.19297 0.96075 0.94494 0.85116 1.43016 1.51351 1.33094 1.01813 1.21368 0.78389 0.80173 0.89184 1.90642 1.36069 1.32592 1.78575 1.21820 1.03753 1.03408 0.88377 1.21491 1.00170 0.96523 0.96045 1.21655 1.00380 1.00918 0.91883 1.19091 0.95455 0.92956 0.94218 1.21245 1.29947 1.12723 0.92126 0.92799 1.25030 0.95260 0.95394 0.98804 1.69964 1.32538 1.16137 1.34782 0.86672 0.78286 0.77611 0.85486 1.20302 1.21318 1.20294 1.77258 1.26654 1.23632 0.88230 0.85021 0.84874 0.85107 0.84259 0.83455 0.88187 0.86918 0.80335 0.80710 0.74905 0.88488 0.88523 0.91572 0.91556 0.93360 0.93383 0.96560 0.96547 0.92990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.37 10.62 101.05 1.07 0.71 16 2 S 2.43 7.94 5.36 -107.50 -0.58 7.36 16 3 O -0.93 -6.79 18.10 -57.83 -1.05 -7.83 16 4 O -0.93 -6.34 18.10 -57.83 -1.05 -7.39 16 5 C -0.63 -2.00 5.99 37.16 0.22 -1.78 16 6 C 0.16 0.84 6.51 -4.04 -0.03 0.82 16 7 N -0.37 -3.36 3.68 -61.38 -0.23 -3.59 16 8 C 0.06 0.56 11.43 -17.24 -0.20 0.37 16 9 C -0.26 -3.22 9.61 -39.83 -0.38 -3.61 16 10 C 0.31 3.81 8.11 -154.38 -1.25 2.56 16 11 N -0.64 -7.07 5.45 -11.13 -0.06 -7.13 16 12 C 0.52 6.83 7.80 -10.99 -0.09 6.75 16 13 O -0.51 -8.39 13.11 5.55 0.07 -8.31 16 14 C -0.13 -1.61 5.70 -27.89 -0.16 -1.77 16 15 C -0.10 -1.75 4.50 -26.73 -0.12 -1.87 16 16 C -0.11 -2.19 5.15 -26.73 -0.14 -2.33 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -14.87 9.11 -34.44 -0.31 -15.19 16 19 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 N -0.33 -3.74 12.43 31.44 0.39 -3.35 16 27 H 0.13 -0.09 8.14 -51.92 -0.42 -0.52 16 28 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 29 H 0.13 -0.12 8.14 -51.92 -0.42 -0.54 16 30 H 0.14 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.15 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.32 8.07 -51.93 -0.42 -0.10 16 34 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.18 2.43 5.92 -52.49 -0.31 2.12 16 36 H 0.42 3.28 8.82 -40.82 -0.36 2.92 16 37 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.16 15.07 5.97 5.97 Total: -1.00 -41.32 396.16 -9.39 -50.71 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.97 Total: -3.20 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -1.61 Total: -13.43 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.84 Total: -40.58 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -2.02 Total: -23.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 7.94 SS G_CDS: -0.58 Total: 7.36 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -41.32 -9.39 -50.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806917640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.744 kcal (2) G-P(sol) polarization free energy of solvation -41.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds