Wall clock time and date at job start Wed Apr 1 2020 02:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42104 * 108.57888 * 2 1 4 4 O 1.42099 * 108.58220 * 228.97273 * 2 1 3 5 5 C 1.81402 * 101.92260 * 114.48467 * 2 1 3 6 6 C 1.52997 * 109.47325 * 180.02562 * 5 2 1 7 7 N 1.46502 * 109.47220 * 180.02562 * 6 5 2 8 8 C 1.34965 * 125.97705 * 124.98369 * 7 6 5 9 9 C 1.35238 * 107.86346 * 180.02562 * 8 7 6 10 10 C 1.40410 * 107.86643 * 359.97438 * 9 8 7 11 11 N 1.40158 * 125.97643 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99807 * 0.02562 * 11 10 9 13 13 O 1.21294 * 119.99808 * 359.97438 * 12 11 10 14 14 C 1.50696 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.52999 * 109.47203 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47379 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47379 * 179.97438 * 16 15 14 18 18 C 1.50702 * 109.47508 * 180.02562 * 17 16 15 19 19 H 1.08006 * 119.99613 * 359.97438 * 18 17 16 20 20 C 1.37868 * 120.00474 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99931 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00465 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46925 * 60.00242 * 22 20 18 24 24 H 1.48495 * 109.47591 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47088 * 300.00668 * 22 20 18 26 26 N 1.31224 * 108.05286 * 359.97438 * 10 9 8 27 27 H 1.09004 * 109.47370 * 305.51433 * 1 2 3 28 28 H 1.08999 * 109.47530 * 65.51553 * 1 2 3 29 29 H 1.09001 * 109.47384 * 185.51614 * 1 2 3 30 30 H 1.09001 * 109.47133 * 59.99688 * 5 2 1 31 31 H 1.09005 * 109.47141 * 300.00255 * 5 2 1 32 32 H 1.09004 * 109.47173 * 60.00094 * 6 5 2 33 33 H 1.08995 * 109.46974 * 300.00083 * 6 5 2 34 34 H 1.07999 * 126.06888 * 0.05322 * 8 7 6 35 35 H 1.07998 * 126.07029 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00507 * 179.97438 * 11 10 9 37 37 H 1.08999 * 109.46828 * 299.99542 * 14 12 11 38 38 H 1.09000 * 109.47349 * 60.00108 * 14 12 11 39 39 H 1.09005 * 109.47003 * 300.00041 * 15 14 12 40 40 H 1.08999 * 109.47512 * 59.99276 * 15 14 12 41 41 H 1.09005 * 109.47106 * 300.00001 * 16 15 14 42 42 H 1.09005 * 109.47585 * 59.99882 * 16 15 14 43 43 H 1.08999 * 109.46938 * 299.99601 * 17 16 15 44 44 H 1.08993 * 109.47450 * 59.99758 * 17 16 15 45 45 H 0.97005 * 120.00028 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 7 4.0080 -1.4130 3.1028 8 6 4.7850 -2.4950 3.3198 9 6 4.8140 -2.7244 4.6522 10 6 4.0247 -1.7445 5.2753 11 7 3.7925 -1.6275 6.6526 12 6 4.3518 -2.5068 7.5073 13 8 5.0556 -3.3996 7.0845 14 6 4.1018 -2.3814 8.9881 15 6 4.8460 -3.4953 9.7271 16 6 4.5927 -3.3676 11.2305 17 6 5.3363 -4.4819 11.9695 18 6 5.0863 -4.3566 13.4504 19 1 4.4600 -3.5613 13.8268 20 6 5.6571 -5.2570 14.3246 21 7 6.4203 -6.2251 13.8663 22 14 5.3478 -5.1012 16.1602 23 1 3.8916 -5.2149 16.4282 24 1 6.0695 -6.1827 16.8774 25 1 5.8367 -3.7815 16.6343 26 7 3.5423 -0.9574 4.3428 27 1 -0.3634 0.5970 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 1.7610 -1.7369 1.6666 31 1 1.7610 -0.1170 2.4043 32 1 4.1327 0.1831 1.7474 33 1 4.1335 -1.4367 1.0096 34 1 5.2936 -3.0746 2.5636 35 1 5.3493 -3.5201 5.1489 36 1 3.2300 -0.9133 6.9907 37 1 4.4592 -1.4122 9.3360 38 1 3.0330 -2.4665 9.1846 39 1 4.4882 -4.4643 9.3790 40 1 5.9148 -3.4108 9.5306 41 1 4.9508 -2.3986 11.5783 42 1 3.5239 -3.4520 11.4275 43 1 4.9778 -5.4507 11.6217 44 1 6.4051 -4.3981 11.7728 45 1 6.8222 -6.8584 14.4814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000806917640.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:20:00 Heat of formation + Delta-G solvation = -66.184551 kcal Electronic energy + Delta-G solvation = -25935.484656 eV Core-core repulsion = 21888.001713 eV Total energy + Delta-G solvation = -4047.482944 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.43245 -40.73331 -38.06320 -37.14138 -36.79878 -36.29733 -34.86528 -34.55221 -31.74869 -31.14968 -30.56992 -29.97055 -27.59633 -25.27345 -24.23514 -22.85350 -21.91605 -21.46491 -20.99551 -19.85024 -18.62148 -18.38228 -18.00440 -17.61654 -17.23985 -17.13396 -17.00746 -16.70798 -16.48139 -16.16093 -15.61536 -15.24612 -15.06801 -14.51451 -14.41432 -14.11792 -13.98185 -13.93831 -13.88463 -13.60943 -13.57521 -13.27944 -13.18863 -13.08925 -12.81532 -12.75736 -12.36616 -12.14669 -12.12976 -12.11127 -11.96116 -11.79596 -11.62055 -11.32987 -11.31279 -11.12549 -10.81113 -10.51822 -9.93043 -9.30853 -8.16426 -6.28358 -1.04248 0.67462 1.13029 1.33891 1.42005 1.45621 1.53449 1.77084 2.09668 2.13957 2.43820 2.64526 3.06807 3.16417 3.33334 3.57474 3.62267 3.89986 3.99901 4.07527 4.10693 4.13902 4.18013 4.25702 4.48000 4.56466 4.70505 4.70805 4.76978 4.79106 4.85943 4.90376 4.99319 5.12658 5.22271 5.36337 5.41667 5.59813 5.71862 5.82062 5.91384 6.00110 6.10636 6.28125 6.76417 6.90224 7.08848 7.41240 8.95376 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.040631 B = 0.001334 C = 0.001312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.971554 B =20984.966206 C =21331.775359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.637 4.637 2 S 2.445 3.555 3 O -0.979 6.979 4 O -0.974 6.974 5 C -0.627 4.627 6 C 0.135 3.865 7 N -0.364 5.364 8 C 0.080 3.920 9 C -0.302 4.302 10 C 0.285 3.715 11 N -0.629 5.629 12 C 0.522 3.478 13 O -0.550 6.550 14 C -0.121 4.121 15 C -0.097 4.097 16 C -0.097 4.097 17 C 0.018 3.982 18 C -0.543 4.543 19 H 0.066 0.934 20 C -0.005 4.005 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.265 1.265 24 H -0.286 1.286 25 H -0.265 1.265 26 N -0.338 5.338 27 H 0.150 0.850 28 H 0.141 0.859 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.103 0.897 33 H 0.139 0.861 34 H 0.218 0.782 35 H 0.152 0.848 36 H 0.430 0.570 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.062 0.938 43 H -0.014 1.014 44 H -0.015 1.015 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.775 15.407 -31.303 37.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.790 4.790 2 S 2.629 3.371 3 O -0.976 6.976 4 O -0.971 6.971 5 C -0.755 4.755 6 C 0.013 3.987 7 N -0.149 5.149 8 C -0.066 4.066 9 C -0.332 4.332 10 C 0.029 3.971 11 N -0.280 5.280 12 C 0.311 3.689 13 O -0.425 6.425 14 C -0.160 4.160 15 C -0.135 4.135 16 C -0.134 4.134 17 C -0.019 4.019 18 C -0.581 4.581 19 H 0.084 0.916 20 C -0.202 4.202 21 N -0.577 5.577 22 Si 0.792 3.208 23 H -0.189 1.189 24 H -0.211 1.211 25 H -0.190 1.190 26 N -0.168 5.168 27 H 0.169 0.831 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.175 0.825 31 H 0.170 0.830 32 H 0.121 0.879 33 H 0.157 0.843 34 H 0.234 0.766 35 H 0.170 0.830 36 H 0.269 0.731 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.297 15.977 -32.517 38.949 hybrid contribution 0.051 -1.079 1.934 2.216 sum -14.246 14.898 -30.583 36.881 Atomic orbital electron populations 1.30094 1.21419 1.13981 1.13556 1.06960 0.80061 0.74011 0.76034 1.93579 1.81084 1.36263 1.86656 1.93577 1.81047 1.67606 1.54893 1.30726 1.03616 1.16624 1.24534 1.21688 0.93859 1.02278 0.80827 1.48231 1.38638 1.23175 1.04809 1.23180 0.95207 0.90278 0.97906 1.21932 1.11275 1.06290 0.93708 1.19501 0.96880 0.95070 0.85636 1.42778 1.50877 1.32886 1.01419 1.21491 0.77849 0.79824 0.89757 1.90650 1.38096 1.34468 1.79256 1.21683 1.04857 1.02522 0.86955 1.21269 0.99720 0.97806 0.94696 1.21450 1.00179 0.98816 0.92967 1.19061 0.94313 0.94000 0.94565 1.21750 1.29993 1.13039 0.93355 0.91581 1.26058 0.94836 0.94894 1.04455 1.70125 1.33718 1.17148 1.36732 0.85465 0.78708 0.77962 0.78684 1.18949 1.21142 1.19010 1.77190 1.27004 1.23722 0.88925 0.83134 0.84095 0.82918 0.82491 0.83001 0.87920 0.84285 0.76558 0.83016 0.73124 0.85634 0.85509 0.93403 0.93505 0.91995 0.91923 0.99586 0.99643 0.92919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 1.21 10.62 113.37 1.20 2.41 16 2 S 2.44 12.64 5.36 -56.49 -0.30 12.33 16 3 O -0.98 -13.85 18.10 -127.37 -2.31 -16.15 16 4 O -0.97 -12.33 18.10 -127.37 -2.30 -14.63 16 5 C -0.63 -2.63 5.99 71.98 0.43 -2.20 16 6 C 0.13 1.21 6.51 86.38 0.56 1.77 16 7 N -0.36 -6.01 3.68 -348.11 -1.28 -7.29 16 8 C 0.08 1.36 11.43 83.52 0.96 2.32 16 9 C -0.30 -7.54 9.61 22.11 0.21 -7.33 16 10 C 0.28 6.98 8.11 133.32 1.08 8.06 16 11 N -0.63 -13.31 5.45 -307.51 -1.68 -14.99 16 12 C 0.52 13.55 7.80 87.66 0.68 14.23 16 13 O -0.55 -18.98 13.11 -3.07 -0.04 -19.03 16 14 C -0.12 -2.69 5.70 29.85 0.17 -2.52 16 15 C -0.10 -3.27 4.50 30.59 0.14 -3.13 16 16 C -0.10 -3.78 5.15 30.59 0.16 -3.63 16 17 C 0.02 0.96 4.97 29.85 0.15 1.10 16 18 C -0.54 -31.17 9.11 25.60 0.23 -30.94 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 21 N -0.94 -58.52 13.29 21.44 0.28 -58.24 16 22 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 23 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 24 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 N -0.34 -7.33 12.43 -54.45 -0.68 -8.00 16 27 H 0.15 -0.75 8.14 -2.39 -0.02 -0.77 16 28 H 0.14 -0.34 8.14 -2.39 -0.02 -0.36 16 29 H 0.15 -0.86 8.14 -2.39 -0.02 -0.88 16 30 H 0.16 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.15 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.10 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.14 0.48 8.07 -2.39 -0.02 0.46 16 34 H 0.22 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.15 4.53 5.92 -2.91 -0.02 4.51 16 36 H 0.43 6.03 8.82 -92.71 -0.82 5.21 16 37 H 0.13 2.14 8.14 -2.39 -0.02 2.13 16 38 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 1.77 8.10 -2.38 -0.02 1.75 16 40 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -93.57 396.16 0.34 -93.23 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 0.18 Total: 5.98 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: 6.44 Total: -19.68 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -3.35 Total: -88.52 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -4.65 Total: -49.81 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 12.64 SS G_CDS: -0.30 Total: 12.33 kcal Total: -93.57 0.34 -93.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000806917640.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.042 kcal (2) G-P(sol) polarization free energy of solvation -93.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds