Wall clock time and date at job start Wed Apr 1 2020 02:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99975 * 2 1 4 4 S 1.65603 * 120.00055 * 180.02562 * 2 1 3 5 5 C 1.81396 * 108.33225 * 152.46678 * 4 2 1 6 6 O 1.42097 * 108.33403 * 27.52930 * 4 2 1 7 7 N 1.49360 * 108.72956 * 269.99670 * 4 2 1 8 8 C 1.32415 * 119.99870 * 180.02562 * 7 4 2 9 9 O 1.21539 * 119.99976 * 359.97438 * 8 7 4 10 10 C 1.50706 * 119.99881 * 180.02562 * 8 7 4 11 11 N 1.46896 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.46903 * 110.99877 * 190.00344 * 11 10 8 13 13 C 1.50696 * 109.47812 * 75.60149 * 12 11 10 14 14 H 1.08007 * 119.99602 * 5.05091 * 13 12 11 15 15 C 1.37874 * 120.00586 * 185.04966 * 13 12 11 16 16 N 1.31517 * 119.99337 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00382 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47044 * 59.99813 * 17 15 13 19 19 H 1.48493 * 109.47301 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46917 * 299.99960 * 17 15 13 21 21 C 1.46896 * 111.00414 * 66.04150 * 11 10 8 22 22 C 1.50701 * 109.47278 * 196.07675 * 21 11 10 23 23 C 1.34515 * 125.78259 * 89.71995 * 22 21 11 24 24 C 1.41389 * 106.83866 * 179.88770 * 23 22 21 25 25 C 1.34515 * 106.83787 * 0.37391 * 24 23 22 26 26 O 1.34300 * 125.79515 * 270.02721 * 22 21 11 27 27 H 1.08993 * 109.46930 * 269.99686 * 1 2 3 28 28 H 1.08996 * 109.47020 * 29.99480 * 1 2 3 29 29 H 1.09004 * 109.46608 * 149.99683 * 1 2 3 30 30 H 1.08998 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47471 * 300.00093 * 3 2 1 32 32 H 1.09002 * 109.46744 * 60.00427 * 3 2 1 33 33 H 1.09005 * 109.47098 * 178.88971 * 5 4 2 34 34 H 1.09002 * 109.47248 * 58.89332 * 5 4 2 35 35 H 1.08992 * 109.47399 * 298.88802 * 5 4 2 36 36 H 1.08997 * 109.46832 * 300.00067 * 10 8 7 37 37 H 1.08996 * 109.46930 * 59.99416 * 10 8 7 38 38 H 1.09003 * 109.46911 * 195.60934 * 12 11 10 39 39 H 1.09004 * 109.46337 * 315.60178 * 12 11 10 40 40 H 0.97005 * 119.99837 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.47411 * 316.08288 * 21 11 10 42 42 H 1.09003 * 109.46625 * 76.08235 * 21 11 10 43 43 H 1.07999 * 126.58216 * 0.02562 * 23 22 21 44 44 H 1.07998 * 126.58065 * 180.16035 * 24 23 22 45 45 H 1.08000 * 125.78882 * 179.75105 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4342 -0.0006 5 6 3.9006 -1.1644 -0.7965 6 8 1.4807 -2.4190 -0.6245 7 7 2.5329 -1.8501 1.4137 8 6 3.1827 -2.9746 1.6719 9 8 3.5835 -3.6684 0.7581 10 6 3.4242 -3.3945 3.0990 11 7 4.1598 -4.6659 3.1174 12 6 4.2077 -5.2268 4.4743 13 6 2.8678 -5.8241 4.8187 14 1 2.0867 -5.8638 4.0738 15 6 2.6388 -6.3199 6.0847 16 7 3.5897 -6.2711 6.9918 17 14 0.9780 -7.0609 6.5113 18 1 0.7078 -8.2168 5.6190 19 1 0.9883 -7.5185 7.9239 20 1 -0.0821 -6.0371 6.3299 21 6 5.5121 -4.4998 2.5683 22 6 6.0886 -5.8517 2.2351 23 6 5.9680 -6.4896 1.0570 24 6 6.6591 -7.7166 1.1828 25 6 7.1537 -7.7587 2.4331 26 8 6.8051 -6.6266 3.0658 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2691 1.0696 -0.0005 31 1 1.9342 1.8403 -0.8900 32 1 1.9342 1.8402 0.8901 33 1 4.4701 -2.0939 -0.7893 34 1 4.4512 -0.3969 -0.2525 35 1 3.7468 -0.8407 -1.8258 36 1 4.0094 -2.6292 3.6088 37 1 2.4684 -3.5199 3.6075 38 1 4.9735 -6.0012 4.5205 39 1 4.4469 -4.4364 5.1858 40 1 3.4288 -6.6203 7.8824 41 1 5.4653 -3.8920 1.6647 42 1 6.1455 -4.0065 3.3056 43 1 5.4455 -6.1320 0.1820 44 1 6.7661 -8.4759 0.4224 45 1 7.7326 -8.5662 2.8563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:39 Heat of formation + Delta-G solvation = 17.170286 kcal Electronic energy + Delta-G solvation = -28735.569837 eV Core-core repulsion = 24691.701431 eV Total energy + Delta-G solvation = -4043.868407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.83123 -39.51773 -36.76040 -36.57898 -36.10981 -33.10292 -32.53045 -32.21260 -30.36724 -30.07576 -28.26062 -27.83902 -26.38571 -25.28980 -23.87126 -21.79325 -20.97936 -20.31718 -19.47974 -18.52033 -17.47971 -16.87165 -16.77937 -16.59215 -16.20558 -15.54943 -15.28172 -15.22094 -14.85380 -14.53155 -14.31558 -14.04294 -13.91412 -13.61750 -13.55827 -13.26967 -13.03927 -12.86871 -12.49757 -12.39007 -12.20456 -12.08244 -12.04177 -11.67354 -11.63938 -11.47187 -11.12635 -10.92906 -10.63116 -10.51201 -10.06533 -9.83511 -9.66706 -9.55157 -9.34153 -9.23980 -9.07048 -8.29996 -7.78567 -7.18734 -5.89985 -3.90595 -0.70298 2.08626 2.42268 2.85588 3.06831 3.29416 3.43806 3.46251 3.51731 3.72049 3.84462 4.02968 4.40803 4.46818 4.54687 4.70068 4.78248 5.06769 5.10528 5.14661 5.33419 5.34785 5.39791 5.40212 5.44895 5.55497 5.63947 5.68137 5.78932 5.94323 6.10571 6.19814 6.44811 6.48025 6.62945 6.71023 6.79305 7.17971 7.30316 7.39982 7.86754 7.94616 8.11689 8.24337 8.46196 8.63104 9.17528 9.72815 11.20266 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.003910 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.480769 B = 7159.904157 C = 9321.283466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.963 5.963 3 C 0.080 3.920 4 S 2.542 3.458 5 C -0.646 4.646 6 O -0.945 6.945 7 N -1.132 6.132 8 C 0.555 3.445 9 O -0.562 6.562 10 C 0.077 3.923 11 N -0.521 5.521 12 C 0.191 3.809 13 C -0.503 4.503 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.130 3.870 22 C 0.023 3.977 23 C -0.201 4.201 24 C -0.220 4.220 25 C -0.052 4.052 26 O -0.171 6.171 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.131 0.869 35 H 0.125 0.875 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.038 0.962 39 H 0.000 1.000 40 H 0.260 0.740 41 H 0.098 0.902 42 H 0.036 0.964 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.610 17.835 -16.460 24.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.798 5.798 3 C -0.065 4.065 4 S 2.643 3.357 5 C -0.802 4.802 6 O -0.922 6.922 7 N -1.043 6.043 8 C 0.341 3.659 9 O -0.442 6.442 10 C -0.057 4.057 11 N -0.246 5.246 12 C 0.067 3.933 13 C -0.542 4.542 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.202 1.202 21 C 0.002 3.998 22 C -0.028 4.028 23 C -0.221 4.221 24 C -0.239 4.239 25 C -0.120 4.120 26 O -0.067 6.067 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.171 0.829 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.076 0.924 37 H 0.137 0.863 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.054 0.946 43 H 0.162 0.838 44 H 0.157 0.843 45 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 0.910 16.919 -16.659 23.762 hybrid contribution 0.033 -0.057 0.346 0.352 sum 0.942 16.862 -16.314 23.481 Atomic orbital electron populations 1.21738 0.75988 1.04274 1.03457 1.55747 1.14876 1.18091 1.91104 1.21842 0.95647 0.85142 1.03874 1.08496 0.79084 0.72704 0.75388 1.30407 1.22585 1.13666 1.13534 1.93480 1.66850 1.51991 1.79916 1.70776 1.58743 1.39517 1.35299 1.20148 0.73838 0.78271 0.93623 1.90784 1.51746 1.54927 1.46728 1.21574 1.02082 0.91123 0.90918 1.61807 1.12070 1.23441 1.27319 1.19874 0.98438 0.94409 0.80622 1.21144 0.98310 1.38415 0.96346 0.91826 1.24958 0.96984 0.96258 0.96280 1.69962 1.32641 1.47031 1.04278 0.86584 0.84241 0.79726 0.77015 1.20233 1.21461 1.20242 1.20573 0.90214 0.88585 1.00383 1.22293 0.96699 0.95082 0.88706 1.21455 1.05299 0.95709 0.99638 1.21721 1.04512 0.99762 0.97928 1.23825 1.05118 0.90063 0.92999 1.84068 1.55775 1.26111 1.40724 0.91368 0.89822 0.89700 0.90613 0.90909 0.90415 0.82939 0.85089 0.85649 0.92375 0.86274 0.94436 0.98191 0.93019 0.88379 0.94592 0.83823 0.84304 0.78968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.74 59.85 0.64 1.26 16 2 N -0.96 -7.24 3.64 -129.21 -0.47 -7.71 16 3 C 0.08 0.28 10.61 59.85 0.63 0.91 16 4 S 2.54 30.35 4.26 -107.50 -0.46 29.89 16 5 C -0.65 -5.00 9.63 101.05 0.97 -4.03 16 6 O -0.94 -16.11 16.53 -46.08 -0.76 -16.88 16 7 N -1.13 -17.79 10.31 30.51 0.31 -17.47 16 8 C 0.56 10.75 6.97 -12.02 -0.08 10.67 16 9 O -0.56 -11.70 12.59 -5.52 -0.07 -11.77 16 10 C 0.08 1.62 5.35 -4.98 -0.03 1.59 16 11 N -0.52 -12.39 4.11 -238.97 -0.98 -13.37 16 12 C 0.19 5.25 4.59 -4.98 -0.02 5.23 16 13 C -0.50 -14.94 8.55 -34.44 -0.29 -15.24 16 14 H 0.06 1.92 7.81 -52.48 -0.41 1.51 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 17 Si 0.90 22.73 29.54 -169.99 -5.02 17.70 16 18 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.13 2.70 5.06 -4.98 -0.03 2.68 16 22 C 0.02 0.49 6.13 -35.62 -0.22 0.27 16 23 C -0.20 -4.00 10.81 -39.70 -0.43 -4.43 16 24 C -0.22 -3.87 10.91 -39.70 -0.43 -4.31 16 25 C -0.05 -0.92 12.09 29.42 0.36 -0.57 16 26 O -0.17 -3.68 9.79 5.72 0.06 -3.63 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 0.30 8.07 -51.93 -0.42 -0.12 16 29 H 0.08 0.71 7.18 -51.93 -0.37 0.33 16 30 H 0.08 0.14 5.82 -51.93 -0.30 -0.16 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.15 1.54 6.99 -51.92 -0.36 1.17 16 34 H 0.13 0.61 6.87 -51.92 -0.36 0.26 16 35 H 0.12 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 1.10 8.12 -51.93 -0.42 0.67 16 37 H 0.12 2.70 7.43 -51.93 -0.39 2.31 16 38 H 0.04 1.12 6.47 -51.93 -0.34 0.78 16 39 H 0.00 0.01 8.00 -51.93 -0.42 -0.41 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.10 1.85 5.81 -51.93 -0.30 1.54 16 42 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 43 H 0.14 2.75 8.06 -52.49 -0.42 2.33 16 44 H 0.14 2.01 8.06 -52.49 -0.42 1.58 16 45 H 0.19 2.59 8.06 -52.49 -0.42 2.16 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -40.81 383.92 -6.49 -47.30 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -6.60 Total: 1.32 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 0.98 Total: -4.39 kcal Atomic # 7 Polarization: -64.93 SS G_CDS: -0.40 Total: -65.33 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -0.78 Total: -32.27 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: 30.35 SS G_CDS: -0.46 Total: 29.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -40.81 -6.49 -47.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.466 kcal (2) G-P(sol) polarization free energy of solvation -40.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds