Wall clock time and date at job start Wed Apr 1 2020 02:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46498 * 119.99975 * 2 1 4 4 S 1.65603 * 120.00055 * 180.02562 * 2 1 3 5 5 C 1.81396 * 108.33225 * 152.46678 * 4 2 1 6 6 O 1.42097 * 108.33403 * 27.52930 * 4 2 1 7 7 N 1.49360 * 108.72956 * 269.99670 * 4 2 1 8 8 C 1.32415 * 119.99870 * 180.02562 * 7 4 2 9 9 O 1.21539 * 119.99976 * 359.97438 * 8 7 4 10 10 C 1.50706 * 119.99881 * 180.02562 * 8 7 4 11 11 N 1.46896 * 109.46972 * 180.02562 * 10 8 7 12 12 C 1.46903 * 110.99877 * 190.00344 * 11 10 8 13 13 C 1.50696 * 109.47812 * 75.60149 * 12 11 10 14 14 H 1.08007 * 119.99602 * 5.05091 * 13 12 11 15 15 C 1.37874 * 120.00586 * 185.04966 * 13 12 11 16 16 N 1.31517 * 119.99337 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 120.00382 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47044 * 59.99813 * 17 15 13 19 19 H 1.48493 * 109.47301 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.46917 * 299.99960 * 17 15 13 21 21 C 1.46896 * 111.00414 * 66.04150 * 11 10 8 22 22 C 1.50701 * 109.47278 * 196.07675 * 21 11 10 23 23 C 1.34515 * 125.78259 * 89.71995 * 22 21 11 24 24 C 1.41389 * 106.83866 * 179.88770 * 23 22 21 25 25 C 1.34515 * 106.83787 * 0.37391 * 24 23 22 26 26 O 1.34300 * 125.79515 * 270.02721 * 22 21 11 27 27 H 1.08993 * 109.46930 * 269.99686 * 1 2 3 28 28 H 1.08996 * 109.47020 * 29.99480 * 1 2 3 29 29 H 1.09004 * 109.46608 * 149.99683 * 1 2 3 30 30 H 1.08998 * 109.47252 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47471 * 300.00093 * 3 2 1 32 32 H 1.09002 * 109.46744 * 60.00427 * 3 2 1 33 33 H 1.09005 * 109.47098 * 178.88971 * 5 4 2 34 34 H 1.09002 * 109.47248 * 58.89332 * 5 4 2 35 35 H 1.08992 * 109.47399 * 298.88802 * 5 4 2 36 36 H 1.08997 * 109.46832 * 300.00067 * 10 8 7 37 37 H 1.08996 * 109.46930 * 59.99416 * 10 8 7 38 38 H 1.09003 * 109.46911 * 195.60934 * 12 11 10 39 39 H 1.09004 * 109.46337 * 315.60178 * 12 11 10 40 40 H 0.97005 * 119.99837 * 180.02562 * 16 15 13 41 41 H 1.08993 * 109.47411 * 316.08288 * 21 11 10 42 42 H 1.09003 * 109.46625 * 76.08235 * 21 11 10 43 43 H 1.07999 * 126.58216 * 0.02562 * 23 22 21 44 44 H 1.07998 * 126.58065 * 180.16035 * 24 23 22 45 45 H 1.08000 * 125.78882 * 179.75105 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4342 -0.0006 5 6 3.9006 -1.1644 -0.7965 6 8 1.4807 -2.4190 -0.6245 7 7 2.5329 -1.8501 1.4137 8 6 3.1827 -2.9746 1.6719 9 8 3.5835 -3.6684 0.7581 10 6 3.4242 -3.3945 3.0990 11 7 4.1598 -4.6659 3.1174 12 6 4.2077 -5.2268 4.4743 13 6 2.8678 -5.8241 4.8187 14 1 2.0867 -5.8638 4.0738 15 6 2.6388 -6.3199 6.0847 16 7 3.5897 -6.2711 6.9918 17 14 0.9780 -7.0609 6.5113 18 1 0.7078 -8.2168 5.6190 19 1 0.9883 -7.5185 7.9239 20 1 -0.0821 -6.0371 6.3299 21 6 5.5121 -4.4998 2.5683 22 6 6.0886 -5.8517 2.2351 23 6 5.9680 -6.4896 1.0570 24 6 6.6591 -7.7166 1.1828 25 6 7.1537 -7.7587 2.4331 26 8 6.8051 -6.6266 3.0658 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5137 29 1 -0.3633 -0.8900 -0.5139 30 1 3.2691 1.0696 -0.0005 31 1 1.9342 1.8403 -0.8900 32 1 1.9342 1.8402 0.8901 33 1 4.4701 -2.0939 -0.7893 34 1 4.4512 -0.3969 -0.2525 35 1 3.7468 -0.8407 -1.8258 36 1 4.0094 -2.6292 3.6088 37 1 2.4684 -3.5199 3.6075 38 1 4.9735 -6.0012 4.5205 39 1 4.4469 -4.4364 5.1858 40 1 3.4288 -6.6203 7.8824 41 1 5.4653 -3.8920 1.6647 42 1 6.1455 -4.0065 3.3056 43 1 5.4455 -6.1320 0.1820 44 1 6.7661 -8.4759 0.4224 45 1 7.7326 -8.5662 2.8563 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159010.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:07:38 Heat of formation + Delta-G solvation = -16.514815 kcal Electronic energy + Delta-G solvation = -28737.030533 eV Core-core repulsion = 24691.701431 eV Total energy + Delta-G solvation = -4045.329102 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 343.140 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.35267 -40.94952 -38.02758 -37.62225 -37.24567 -34.75391 -34.34412 -33.79281 -31.71030 -30.98351 -29.83689 -28.71794 -28.08019 -25.92487 -25.70922 -23.51745 -22.47188 -21.79707 -21.07643 -19.47284 -18.60714 -18.38340 -18.24545 -18.02927 -17.43677 -17.14349 -16.69216 -16.34762 -16.25112 -15.81931 -15.67628 -15.39124 -15.20241 -14.75019 -14.60443 -14.32062 -14.20797 -13.87453 -13.69665 -13.57484 -13.40768 -13.38261 -13.26096 -13.18677 -13.07573 -12.93400 -12.74795 -12.58076 -12.46661 -12.36464 -12.01448 -11.41572 -11.14061 -10.87097 -10.76511 -10.71307 -10.58234 -10.21066 -9.31488 -9.04581 -8.18035 -6.28161 -1.55260 0.90329 1.21444 1.38239 1.42309 1.50376 1.58260 1.80994 2.02256 2.27656 2.41107 2.95926 3.12867 3.38245 3.54366 3.82834 3.85500 3.90716 4.06750 4.18624 4.25172 4.32516 4.38818 4.49775 4.53593 4.56707 4.67674 4.70602 4.71875 4.85062 4.87298 4.99120 5.00924 5.11732 5.16710 5.21199 5.29680 5.30106 5.41636 5.65140 5.75006 6.06147 6.21343 6.38797 6.52083 6.85229 7.02807 7.40238 8.91761 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.009478 B = 0.003910 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2953.480769 B = 7159.904157 C = 9321.283466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.949 5.949 3 C 0.064 3.936 4 S 2.530 3.470 5 C -0.611 4.611 6 O -1.007 7.007 7 N -1.161 6.161 8 C 0.558 3.442 9 O -0.590 6.590 10 C 0.072 3.928 11 N -0.535 5.535 12 C 0.211 3.789 13 C -0.525 4.525 14 H 0.050 0.950 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.964 3.036 18 H -0.275 1.275 19 H -0.275 1.275 20 H -0.267 1.267 21 C 0.134 3.866 22 C -0.013 4.013 23 C -0.205 4.205 24 C -0.222 4.222 25 C -0.053 4.053 26 O -0.199 6.199 27 H 0.061 0.939 28 H 0.126 0.874 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.172 0.828 35 H 0.169 0.831 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.010 0.990 39 H -0.021 1.021 40 H 0.265 0.735 41 H 0.116 0.884 42 H 0.039 0.961 43 H 0.146 0.854 44 H 0.174 0.826 45 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.873 19.605 -18.400 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.786 5.786 3 C -0.079 4.079 4 S 2.637 3.363 5 C -0.772 4.772 6 O -0.985 6.985 7 N -1.069 6.069 8 C 0.344 3.656 9 O -0.472 6.472 10 C -0.061 4.061 11 N -0.260 5.260 12 C 0.086 3.914 13 C -0.563 4.563 14 H 0.068 0.932 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.200 1.200 20 H -0.192 1.192 21 C 0.007 3.993 22 C -0.063 4.063 23 C -0.225 4.225 24 C -0.241 4.241 25 C -0.120 4.120 26 O -0.096 6.096 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.190 0.810 35 H 0.187 0.813 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.028 0.972 39 H -0.004 1.004 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.164 0.836 44 H 0.191 0.809 45 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 1.129 18.726 -18.576 26.401 hybrid contribution -0.002 -0.426 0.813 0.918 sum 1.128 18.301 -17.763 25.528 Atomic orbital electron populations 1.21925 0.75651 1.05247 1.03456 1.55627 1.14972 1.17417 1.90555 1.22329 0.96548 0.83142 1.05883 1.08162 0.80263 0.73789 0.74101 1.30101 1.16886 1.14484 1.15686 1.93433 1.68980 1.55891 1.80189 1.70311 1.58494 1.38135 1.39943 1.19613 0.74431 0.79379 0.92201 1.90748 1.53433 1.55936 1.47037 1.21534 1.00694 0.90533 0.93370 1.61693 1.14294 1.25263 1.24797 1.19440 0.96588 0.92991 0.82426 1.21353 0.98945 1.39353 0.96667 0.93162 1.25804 1.00927 0.96321 0.95923 1.70072 1.34630 1.47465 1.04696 0.85528 0.79546 0.78882 0.77211 1.20077 1.20004 1.19218 1.20606 0.88558 0.89270 1.00879 1.22456 0.98437 0.95884 0.89512 1.21699 1.05016 0.96624 0.99168 1.22109 1.03656 0.99524 0.98774 1.24749 1.04475 0.89588 0.93167 1.84047 1.56329 1.27457 1.41784 0.92045 0.85596 0.91817 0.88550 0.87626 0.89775 0.84530 0.80975 0.81265 0.90837 0.88947 0.97199 1.00371 0.92583 0.86602 0.94282 0.83604 0.80872 0.74971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.74 127.77 1.37 2.39 16 2 N -0.95 -12.11 3.64 -562.69 -2.05 -14.16 16 3 C 0.06 0.17 10.61 127.77 1.36 1.53 16 4 S 2.53 58.25 4.26 -56.49 -0.24 58.01 16 5 C -0.61 -7.18 9.63 113.37 1.09 -6.09 16 6 O -1.01 -35.41 16.53 -138.61 -2.29 -37.70 16 7 N -1.16 -37.24 10.31 -176.98 -1.83 -39.07 16 8 C 0.56 22.51 6.97 88.02 0.61 23.12 16 9 O -0.59 -25.37 12.59 6.54 0.08 -25.29 16 10 C 0.07 3.21 5.35 85.56 0.46 3.67 16 11 N -0.54 -26.93 4.11 -909.96 -3.74 -30.67 16 12 C 0.21 12.33 4.59 85.56 0.39 12.72 16 13 C -0.52 -32.61 8.55 25.60 0.22 -32.39 16 14 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 15 C 0.01 0.52 5.46 84.65 0.46 0.99 16 16 N -0.93 -58.22 13.29 21.45 0.28 -57.93 16 17 Si 0.96 47.48 29.54 68.60 2.03 49.51 16 18 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 C 0.13 5.81 5.06 85.56 0.43 6.24 16 22 C -0.01 -0.56 6.13 24.83 0.15 -0.41 16 23 C -0.21 -8.22 10.81 22.19 0.24 -7.98 16 24 C -0.22 -7.54 10.91 22.19 0.24 -7.30 16 25 C -0.05 -1.83 12.09 66.97 0.81 -1.02 16 26 O -0.20 -8.79 9.79 -2.44 -0.02 -8.82 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.13 0.51 8.07 -2.39 -0.02 0.49 16 29 H 0.06 1.09 7.18 -2.38 -0.02 1.07 16 30 H 0.10 -0.14 5.82 -2.39 -0.01 -0.16 16 31 H 0.11 -0.30 8.14 -2.39 -0.02 -0.32 16 32 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.14 2.42 6.99 -2.39 -0.02 2.40 16 34 H 0.17 0.67 6.87 -2.39 -0.02 0.66 16 35 H 0.17 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 2.94 8.12 -2.39 -0.02 2.92 16 37 H 0.09 4.55 7.43 -2.39 -0.02 4.53 16 38 H 0.01 0.63 6.47 -2.39 -0.02 0.61 16 39 H -0.02 -1.30 8.00 -2.39 -0.02 -1.32 16 40 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 41 H 0.12 4.51 5.81 -2.39 -0.01 4.50 16 42 H 0.04 1.62 8.05 -2.39 -0.02 1.60 16 43 H 0.15 5.66 8.06 -2.91 -0.02 5.64 16 44 H 0.17 4.54 8.06 -2.91 -0.02 4.51 16 45 H 0.23 5.72 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -96.16 383.92 1.06 -95.10 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.99 Total: 15.54 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: 7.84 Total: -4.53 kcal Atomic # 7 Polarization: -134.49 SS G_CDS: -7.33 Total: -141.82 kcal Atomic # 8 Polarization: -69.58 SS G_CDS: -2.23 Total: -71.81 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 16 Polarization: 58.25 SS G_CDS: -0.24 Total: 58.01 kcal Total: -96.16 1.06 -95.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159010.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.584 kcal (2) G-P(sol) polarization free energy of solvation -96.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds