Wall clock time and date at job start Wed Apr 1 2020 02:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34233 * 116.99817 * 2 1 4 4 O 1.20825 * 120.00107 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99877 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47485 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.47767 * 179.97438 * 6 5 3 8 8 C 1.36940 * 120.00032 * 270.00748 * 7 6 5 9 9 H 1.07996 * 119.99969 * 21.51298 * 8 7 6 10 10 C 1.38821 * 119.99590 * 201.51977 * 8 7 6 11 11 N 1.31617 * 119.99999 * 20.18769 * 10 8 7 12 12 Si 1.86793 * 119.99754 * 200.18617 * 10 8 7 13 13 H 1.48506 * 109.47111 * 94.98798 * 12 10 8 14 14 H 1.48496 * 109.47181 * 214.98597 * 12 10 8 15 15 H 1.48498 * 109.47250 * 334.99358 * 12 10 8 16 16 C 1.46500 * 119.99980 * 89.99925 * 7 6 5 17 17 C 1.50698 * 109.47244 * 84.08045 * 16 7 6 18 18 C 1.38176 * 120.02541 * 352.62464 * 17 16 7 19 19 C 1.38242 * 120.05540 * 179.97438 * 18 17 16 20 20 C 1.38293 * 120.10885 * 359.97438 * 19 18 17 21 21 C 1.38120 * 120.05904 * 0.02562 * 20 19 18 22 22 C 1.38712 * 120.03065 * 172.60497 * 17 16 7 23 23 O 1.35893 * 120.05583 * 359.97438 * 22 17 16 24 24 C 1.42897 * 117.00286 * 174.57741 * 23 22 17 25 25 C 1.53004 * 109.47308 * 184.63095 * 24 23 22 26 26 F 1.39898 * 109.46966 * 304.66469 * 25 24 23 27 27 F 1.39897 * 109.46853 * 64.66470 * 25 24 23 28 28 H 1.09003 * 109.46565 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47144 * 299.99772 * 1 2 3 30 30 H 1.09001 * 109.47230 * 60.00415 * 1 2 3 31 31 H 1.09004 * 109.47493 * 59.99278 * 5 3 2 32 32 H 1.09001 * 109.47190 * 299.99778 * 5 3 2 33 33 H 1.09001 * 109.46833 * 59.99883 * 6 5 3 34 34 H 1.09001 * 109.47043 * 300.00257 * 6 5 3 35 35 H 0.96999 * 119.99945 * 185.00166 * 11 10 8 36 36 H 1.09007 * 109.47229 * 324.07776 * 16 7 6 37 37 H 1.09002 * 109.47024 * 204.08126 * 16 7 6 38 38 H 1.07995 * 119.97030 * 0.02562 * 18 17 16 39 39 H 1.07995 * 119.94557 * 180.02562 * 19 18 17 40 40 H 1.08001 * 119.96633 * 180.27936 * 20 19 18 41 41 H 1.08003 * 120.02672 * 180.02562 * 21 20 19 42 42 H 1.09002 * 109.47234 * 304.63156 * 24 23 22 43 43 H 1.09003 * 109.46956 * 64.63319 * 24 23 22 44 44 H 1.08998 * 109.46624 * 184.66615 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0002 2.7421 -0.0011 7 7 5.4631 2.8189 -0.0011 8 6 6.1468 2.8551 1.1849 9 1 5.6818 2.4874 2.0877 10 6 7.4375 3.3644 1.2266 11 7 7.8628 4.1587 0.2673 12 14 8.5705 2.9224 2.6444 13 1 9.4188 1.7663 2.2583 14 1 9.4358 4.0852 2.9676 15 1 7.7577 2.5642 3.8345 16 6 6.1946 2.8568 -1.2698 17 6 6.2447 4.2744 -1.7786 18 6 5.5220 5.2640 -1.1403 19 6 5.5679 6.5648 -1.6063 20 6 6.3373 6.8790 -2.7116 21 6 7.0616 5.8933 -3.3532 22 6 7.0167 4.5869 -2.8879 23 8 7.7291 3.6155 -3.5168 24 6 8.4058 3.9835 -4.7205 25 6 9.0521 2.7436 -5.3417 26 9 9.8901 2.1340 -4.4018 27 9 8.0546 1.8431 -5.7305 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.9557 0.7809 -0.8908 32 1 3.9564 0.7807 0.8892 33 1 3.6107 3.2365 0.8889 34 1 3.6101 3.2361 -0.8910 35 1 8.7860 4.4563 0.2575 36 1 5.6879 2.2261 -2.0004 37 1 7.2094 2.4902 -1.1151 38 1 4.9214 5.0214 -0.2762 39 1 5.0026 7.3370 -1.1058 40 1 6.3751 7.8967 -3.0710 41 1 7.6626 6.1393 -4.2161 42 1 7.6906 4.4111 -5.4232 43 1 9.1767 4.7198 -4.4933 44 1 9.6368 3.0369 -6.2135 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895455337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:52 Heat of formation + Delta-G solvation = -169.455527 kcal Electronic energy + Delta-G solvation = -30818.055439 eV Core-core repulsion = 26179.961192 eV Total energy + Delta-G solvation = -4638.094247 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.143 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.83072 -46.86445 -40.12803 -39.46942 -37.10048 -36.34984 -35.57390 -32.17882 -31.27443 -30.32615 -29.33099 -28.71854 -27.42639 -25.46524 -24.40497 -23.52118 -21.63074 -21.13114 -20.41960 -19.78239 -18.05139 -17.38515 -17.35337 -16.82363 -16.58797 -16.50860 -16.23498 -16.18790 -15.16413 -14.84858 -14.79992 -14.56159 -13.99966 -13.70272 -13.62220 -13.43177 -13.22709 -13.19527 -12.99430 -12.87621 -12.55748 -12.18850 -12.05726 -11.97424 -11.90653 -11.42410 -11.20052 -10.99630 -10.87037 -10.73757 -10.64717 -10.54462 -10.47117 -10.35842 -10.14497 -10.10301 -9.89641 -9.79033 -8.57103 -7.74961 -7.18833 -6.94736 -5.72056 -3.24172 2.36133 2.42256 2.55377 3.01380 3.34530 3.40635 3.48381 3.49452 3.88971 4.15462 4.47665 4.50026 4.78455 4.96187 5.11017 5.15925 5.18914 5.21826 5.33739 5.40614 5.45610 5.55526 5.57491 5.69481 5.72474 5.86468 5.98592 6.21118 6.28386 6.35825 6.56161 6.63822 6.68171 6.77388 6.87880 6.97514 7.11858 7.27943 7.44153 7.65399 7.78299 7.84344 8.06553 8.18516 8.32263 9.14301 9.78062 10.25037 11.24924 Molecular weight = 343.14amu Principal moments of inertia in cm(-1) A = 0.007676 B = 0.004054 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3646.741546 B = 6904.349806 C = 7997.703798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.463 3.537 4 O -0.513 6.513 5 C -0.135 4.135 6 C 0.159 3.841 7 N -0.588 5.588 8 C -0.270 4.270 9 H 0.072 0.928 10 C 0.013 3.987 11 N -0.876 5.876 12 Si 0.895 3.105 13 H -0.289 1.289 14 H -0.294 1.294 15 H -0.280 1.280 16 C 0.213 3.787 17 C -0.023 4.023 18 C -0.040 4.040 19 C -0.160 4.160 20 C -0.118 4.118 21 C -0.215 4.215 22 C 0.105 3.895 23 O -0.299 6.299 24 C 0.009 3.991 25 C 0.273 3.727 26 F -0.195 7.195 27 F -0.201 7.201 28 H 0.095 0.905 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.028 0.972 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.700 -1.814 -10.438 11.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.306 3.694 4 O -0.401 6.401 5 C -0.176 4.176 6 C 0.031 3.969 7 N -0.307 5.307 8 C -0.399 4.399 9 H 0.090 0.910 10 C -0.187 4.187 11 N -0.518 5.518 12 Si 0.724 3.276 13 H -0.216 1.216 14 H -0.220 1.220 15 H -0.206 1.206 16 C 0.087 3.913 17 C -0.026 4.026 18 C -0.058 4.058 19 C -0.178 4.178 20 C -0.136 4.136 21 C -0.234 4.234 22 C 0.061 3.939 23 O -0.214 6.214 24 C -0.068 4.068 25 C 0.219 3.781 26 F -0.177 7.177 27 F -0.182 7.182 28 H 0.113 0.887 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.105 0.895 38 H 0.147 0.853 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.743 -1.609 -10.321 11.096 hybrid contribution 0.770 0.114 0.670 1.027 sum -2.973 -1.496 -9.651 10.209 Atomic orbital electron populations 1.23166 0.77473 1.03061 1.02246 1.86573 1.22697 1.34626 1.84477 1.24432 0.92758 0.80790 0.71395 1.90627 1.67486 1.36337 1.45634 1.22409 0.84672 1.05041 1.05435 1.20616 0.85256 0.90115 1.00899 1.44005 0.99187 1.84693 1.02851 1.19140 0.97652 1.35682 0.87399 0.91049 1.24865 0.99322 0.96716 0.97792 1.70129 1.15703 1.31758 1.34248 0.86411 0.81256 0.77568 0.82330 1.21567 1.22025 1.20566 1.19447 0.97559 0.89546 0.84720 1.19883 0.92883 0.99530 0.90315 1.20755 0.97170 0.90887 0.96982 1.20922 1.02009 0.96912 0.97973 1.20498 0.98572 0.97471 0.97051 1.20805 1.06184 0.92903 1.03481 1.18707 0.94283 0.86564 0.94392 1.86128 1.63004 1.36178 1.36042 1.23774 0.98206 0.96068 0.88763 1.22017 0.81672 0.84462 0.89913 1.93037 1.71663 1.85047 1.67930 1.93007 1.63143 1.70682 1.91412 0.88660 0.92210 0.92219 0.88462 0.87769 0.92268 0.93339 0.93652 0.95382 0.89502 0.85320 0.87735 0.87774 0.87509 0.89810 0.89729 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.44 16 2 O -0.37 -5.35 10.57 -39.27 -0.41 -5.76 16 3 C 0.46 7.66 7.96 36.00 0.29 7.95 16 4 O -0.51 -9.64 15.73 -18.75 -0.29 -9.93 16 5 C -0.13 -2.27 6.13 -27.88 -0.17 -2.45 16 6 C 0.16 3.14 3.64 -4.04 -0.01 3.13 16 7 N -0.59 -13.39 1.48 -174.61 -0.26 -13.65 16 8 C -0.27 -6.81 9.62 -15.05 -0.14 -6.96 16 9 H 0.07 1.79 7.91 -52.49 -0.42 1.38 16 10 C 0.01 0.35 4.86 -17.43 -0.08 0.26 16 11 N -0.88 -23.55 9.05 55.49 0.50 -23.05 16 12 Si 0.89 21.15 29.60 -169.99 -5.03 16.12 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 15 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 16 C 0.21 4.89 4.76 -5.19 -0.02 4.86 16 17 C -0.02 -0.50 3.95 -104.47 -0.41 -0.92 16 18 C -0.04 -0.87 8.28 -39.60 -0.33 -1.20 16 19 C -0.16 -3.13 10.04 -39.56 -0.40 -3.53 16 20 C -0.12 -2.11 10.04 -39.60 -0.40 -2.51 16 21 C -0.21 -3.85 9.03 -39.43 -0.36 -4.21 16 22 C 0.10 2.13 6.65 -39.22 -0.26 1.87 16 23 O -0.30 -5.69 9.43 -19.41 -0.18 -5.87 16 24 C 0.01 0.12 4.98 37.16 0.18 0.30 16 25 C 0.27 3.19 5.64 37.16 0.21 3.40 16 26 F -0.20 -2.99 17.21 2.25 0.04 -2.95 16 27 F -0.20 -2.82 17.33 2.25 0.04 -2.78 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.06 1.22 8.00 -51.93 -0.42 0.81 16 34 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 35 H 0.25 6.89 8.32 -40.82 -0.34 6.55 16 36 H 0.03 0.61 8.12 -51.92 -0.42 0.18 16 37 H 0.09 2.26 6.69 -51.93 -0.35 1.92 16 38 H 0.13 3.00 5.97 -52.49 -0.31 2.69 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.55 6.33 -52.48 -0.33 1.22 16 42 H 0.08 0.91 7.64 -51.93 -0.40 0.52 16 43 H 0.08 0.98 7.70 -51.93 -0.40 0.58 16 44 H 0.12 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -30.93 377.20 -6.72 -37.65 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.96 Total: 3.09 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.84 Total: 1.46 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.24 Total: -36.70 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -0.89 Total: -21.56 kcal Atomic # 9 Polarization: -5.82 SS G_CDS: 0.08 Total: -5.74 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.93 -6.72 -37.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895455337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.804 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds